Wall clock time and date at job start Tue Mar 31 2020 06:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42897 * 109.47728 * 2 1 4 4 C 1.35943 * 117.00284 * 180.02562 * 3 2 1 5 5 C 1.38566 * 120.08422 * 359.72342 * 4 3 2 6 6 C 1.38244 * 120.00843 * 179.74616 * 5 4 3 7 7 C 1.50707 * 119.90504 * 180.25402 * 6 5 4 8 8 H 1.08997 * 110.99278 * 26.03990 * 7 6 5 9 9 N 1.48965 * 111.13211 * 150.25143 * 7 6 5 10 10 C 1.46595 * 110.93521 * 160.38231 * 9 7 6 11 11 H 1.08992 * 108.81862 * 89.03452 * 10 9 7 12 12 C 1.50701 * 108.81265 * 207.25392 * 10 9 7 13 13 O 1.20822 * 120.00632 * 18.54709 * 12 10 9 14 14 O 1.34232 * 119.99699 * 198.54810 * 12 10 9 15 15 C 1.54065 * 112.85798 * 328.14189 * 10 9 7 16 16 S 1.83699 * 103.49526 * 3.87243 * 15 10 9 17 17 C 1.38319 * 120.18764 * 0.50536 * 6 5 4 18 18 C 1.38156 * 120.16689 * 359.76934 * 17 6 5 19 19 C 1.38754 * 119.98881 * 359.97438 * 18 17 6 20 20 O 1.35804 * 120.09396 * 180.02562 * 19 18 17 21 21 C 1.34808 * 116.99993 * 354.40301 * 20 19 18 22 22 H 1.08002 * 119.99999 * 5.05844 * 21 20 19 23 23 C 1.38638 * 120.00158 * 185.06267 * 21 20 19 24 24 N 1.31563 * 120.00082 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 119.99916 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.46977 * 89.99804 * 25 23 21 27 27 H 1.48492 * 109.47050 * 209.99698 * 25 23 21 28 28 H 1.48500 * 109.46941 * 330.00149 * 25 23 21 29 29 H 1.09000 * 109.46882 * 59.99809 * 1 2 3 30 30 H 1.08991 * 109.47562 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46859 * 300.00178 * 1 2 3 32 32 H 1.08999 * 109.47009 * 239.99535 * 2 1 3 33 33 H 1.09003 * 109.47385 * 120.00120 * 2 1 3 34 34 H 1.07999 * 119.99942 * 359.97438 * 5 4 3 35 35 H 1.00900 * 111.00493 * 284.29232 * 9 7 6 36 36 H 0.96702 * 116.99771 * 180.02562 * 14 12 10 37 37 H 1.09000 * 110.61859 * 122.37885 * 15 10 9 38 38 H 1.09001 * 110.61907 * 245.21453 * 15 10 9 39 39 H 1.07996 * 119.91459 * 179.74525 * 17 6 5 40 40 H 1.08006 * 120.00843 * 179.97438 * 18 17 6 41 41 H 0.97007 * 120.00167 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3542 1.5252 -0.0005 5 6 4.1998 0.4276 0.0047 6 6 5.5701 0.6104 -0.0011 7 6 6.4876 -0.5852 -0.0012 8 1 5.9983 -1.4529 -0.4435 9 7 7.7689 -0.2788 -0.6965 10 6 8.8150 -1.2304 -0.3104 11 1 8.7798 -2.0848 -0.9861 12 6 10.1575 -0.5602 -0.4508 13 8 10.2291 0.6449 -0.4997 14 8 11.2739 -1.3022 -0.5215 15 6 8.6605 -1.7349 1.1371 16 16 7.0934 -0.9570 1.6972 17 6 6.1014 1.8875 -0.0017 18 6 5.2652 2.9873 -0.0013 19 6 3.8888 2.8120 -0.0007 20 8 3.0649 3.8916 -0.0008 21 6 3.6439 5.1034 0.1158 22 1 4.7205 5.1891 0.1215 23 6 2.8574 6.2395 0.2284 24 7 3.4225 7.4221 0.3427 25 14 0.9953 6.0912 0.2179 26 1 0.5049 5.9158 1.6086 27 1 0.4040 7.3229 -0.3638 28 1 0.5969 4.9170 -0.5992 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 3.7884 -0.5710 0.0097 35 1 7.6432 -0.2662 -1.6976 36 1 12.1116 -0.8275 -0.6107 37 1 8.5785 -2.8216 1.1581 38 1 9.4976 -1.4024 1.7509 39 1 7.1725 2.0252 -0.0021 40 1 5.6828 3.9833 -0.0013 41 1 2.8722 8.2171 0.4211 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006656599.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:06 Heat of formation + Delta-G solvation = -131.153898 kcal Electronic energy + Delta-G solvation = -26791.700351 eV Core-core repulsion = 22763.730331 eV Total energy + Delta-G solvation = -4027.970020 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 7.13 seconds Orbital eigenvalues (eV) -41.48190 -41.29351 -39.45348 -38.70733 -37.35395 -36.83763 -34.49957 -33.03272 -32.38404 -30.95665 -29.88045 -27.76057 -26.71989 -25.09620 -24.78060 -22.71830 -22.21741 -21.58654 -19.85501 -19.59994 -19.20850 -18.54161 -17.83318 -17.65365 -17.21332 -17.00915 -16.94326 -16.20286 -15.94146 -15.64998 -15.59391 -15.44943 -14.97908 -14.74193 -14.66394 -14.29924 -14.10132 -13.78825 -13.73332 -13.57606 -13.43837 -13.29903 -12.89849 -12.76060 -12.69111 -12.51498 -12.31503 -12.05421 -11.93447 -11.70080 -11.49678 -11.43517 -11.19839 -10.89090 -9.80503 -9.55431 -8.86033 -8.68220 -8.50593 -6.19752 0.08451 0.52073 0.91582 1.10056 1.28939 1.29870 1.35163 1.52678 1.77560 2.28633 2.40899 2.71228 2.88110 2.96965 3.12505 3.26472 3.64477 3.79547 3.91822 4.10755 4.12425 4.21636 4.22315 4.32503 4.41393 4.42020 4.47524 4.55020 4.56597 4.83340 4.94645 4.97912 5.15326 5.25805 5.31610 5.46993 5.60514 5.62701 5.74337 5.83287 5.97416 6.04070 6.61669 6.83839 7.02144 7.59446 8.60985 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013012 B = 0.003273 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.303410 B = 8552.220798 C =10255.252541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.043 3.957 3 O -0.338 6.338 4 C 0.058 3.942 5 C -0.134 4.134 6 C -0.112 4.112 7 C 0.215 3.785 8 H 0.121 0.879 9 N -0.685 5.685 10 C 0.095 3.905 11 H 0.131 0.869 12 C 0.483 3.517 13 O -0.529 6.529 14 O -0.508 6.508 15 C -0.056 4.056 16 S -0.300 6.300 17 C -0.055 4.055 18 C -0.211 4.211 19 C 0.103 3.897 20 O -0.234 6.234 21 C -0.398 4.398 22 H 0.082 0.918 23 C 0.013 3.987 24 N -0.921 5.921 25 Si 0.967 3.033 26 H -0.268 1.268 27 H -0.264 1.264 28 H -0.266 1.266 29 H 0.055 0.945 30 H 0.110 0.890 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.165 0.835 35 H 0.371 0.629 36 H 0.429 0.571 37 H 0.147 0.853 38 H 0.107 0.893 39 H 0.130 0.870 40 H 0.113 0.887 41 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.166 -27.701 -2.821 29.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 O -0.254 6.254 4 C 0.012 3.988 5 C -0.155 4.155 6 C -0.115 4.115 7 C -0.003 4.003 8 H 0.139 0.861 9 N -0.323 5.323 10 C -0.018 4.018 11 H 0.149 0.851 12 C 0.324 3.676 13 O -0.417 6.417 14 O -0.322 6.322 15 C -0.204 4.204 16 S -0.072 6.072 17 C -0.075 4.075 18 C -0.230 4.230 19 C 0.053 3.947 20 O -0.141 6.141 21 C -0.474 4.474 22 H 0.099 0.901 23 C -0.185 4.185 24 N -0.561 5.561 25 Si 0.790 3.210 26 H -0.193 1.193 27 H -0.188 1.188 28 H -0.190 1.190 29 H 0.074 0.926 30 H 0.129 0.871 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.182 0.818 35 H 0.194 0.806 36 H 0.291 0.709 37 H 0.165 0.835 38 H 0.125 0.875 39 H 0.148 0.852 40 H 0.131 0.869 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.188 -26.584 -1.225 27.566 hybrid contribution 0.606 0.506 -1.457 1.657 sum 7.795 -26.078 -2.681 27.350 Atomic orbital electron populations 1.21812 0.92052 1.04209 1.02574 1.23083 0.96690 0.80980 1.02385 1.86161 1.18283 1.31202 1.89726 1.18169 0.83476 0.90744 1.06381 1.20836 0.92299 0.97454 1.04878 1.18731 0.91975 0.92991 1.07777 1.23003 0.89588 0.97206 0.90461 0.86116 1.60692 1.04367 1.52804 1.14461 1.21339 0.86791 0.94474 0.99158 0.85145 1.23389 0.87043 0.85453 0.71749 1.90788 1.87597 1.17800 1.45483 1.84446 1.18392 1.44731 1.84665 1.24267 0.96947 1.05206 0.93987 1.88756 1.24846 1.78792 1.14793 1.20666 0.99439 0.90824 0.96602 1.21068 0.91826 1.00306 1.09829 1.19049 0.90060 0.86167 0.99416 1.83596 1.34679 1.13024 1.82803 1.20749 0.93800 0.81197 1.51643 0.90080 1.25207 1.04676 0.93158 0.95483 1.69734 1.38384 0.98467 1.49555 0.85265 0.78181 0.78219 0.79367 1.19284 1.18840 1.18998 0.92578 0.87130 0.92791 0.90448 0.90984 0.81756 0.80576 0.70881 0.83477 0.87468 0.85242 0.86882 0.90542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 10.28 71.98 0.74 -2.42 16 2 C 0.04 1.07 5.46 71.98 0.39 1.47 16 3 O -0.34 -13.28 9.92 -79.11 -0.79 -14.07 16 4 C 0.06 2.35 6.70 22.61 0.15 2.50 16 5 C -0.13 -4.11 8.70 22.35 0.19 -3.91 16 6 C -0.11 -3.39 5.20 -19.84 -0.10 -3.50 16 7 C 0.21 4.49 3.90 85.16 0.33 4.82 16 8 H 0.12 1.68 8.10 -2.39 -0.02 1.66 16 9 N -0.68 -13.31 4.86 -479.16 -2.33 -15.64 16 10 C 0.09 1.27 3.50 44.59 0.16 1.43 16 11 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 12 C 0.48 8.42 7.26 71.24 0.52 8.94 16 13 O -0.53 -14.80 17.26 21.98 0.38 -14.42 16 14 O -0.51 -5.17 13.42 -51.44 -0.69 -5.86 16 15 C -0.06 -0.73 7.09 72.34 0.51 -0.21 16 16 S -0.30 -6.85 22.92 -56.49 -1.29 -8.15 16 17 C -0.06 -2.09 9.35 22.27 0.21 -1.89 16 18 C -0.21 -9.90 9.16 22.37 0.21 -9.69 16 19 C 0.10 5.15 6.66 22.66 0.15 5.30 16 20 O -0.23 -13.55 8.37 -9.31 -0.08 -13.63 16 21 C -0.40 -24.60 9.95 67.92 0.68 -23.92 16 22 H 0.08 5.24 5.44 -2.91 -0.02 5.22 16 23 C 0.01 0.81 5.49 84.83 0.47 1.27 16 24 N -0.92 -56.92 13.96 21.61 0.30 -56.62 16 25 Si 0.97 48.09 28.62 68.60 1.96 50.06 16 26 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 27 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 28 H -0.27 -13.46 7.11 99.48 0.71 -12.75 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.08 1.56 7.67 -2.39 -0.02 1.54 16 33 H 0.07 1.54 7.65 -2.39 -0.02 1.52 16 34 H 0.17 3.57 6.30 -2.91 -0.02 3.55 16 35 H 0.37 5.99 8.91 -89.69 -0.80 5.19 16 36 H 0.43 1.47 9.10 -74.06 -0.67 0.79 16 37 H 0.15 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.11 1.47 7.66 -2.39 -0.02 1.45 16 39 H 0.13 4.91 7.47 -2.91 -0.02 4.89 16 40 H 0.11 5.86 5.64 -2.91 -0.02 5.84 16 41 H 0.28 16.12 8.31 -92.70 -0.77 15.35 16 Total: -1.00 -83.61 362.35 1.70 -81.91 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -0.37 Total: 16.23 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: 4.60 Total: -19.81 kcal Atomic # 7 Polarization: -70.23 SS G_CDS: -2.03 Total: -72.26 kcal Atomic # 8 Polarization: -46.81 SS G_CDS: -1.17 Total: -47.98 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 1.96 Total: 50.06 kcal Atomic # 16 Polarization: -6.85 SS G_CDS: -1.29 Total: -8.15 kcal Total: -83.61 1.70 -81.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006656599.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.246 kcal (2) G-P(sol) polarization free energy of solvation -83.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.14 seconds