Wall clock time and date at job start Tue Mar 31 2020 06:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47575 * 2 1 4 4 C 1.53000 * 109.47575 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47325 * 179.97438 * 4 3 2 6 6 C 1.37643 * 119.81125 * 270.02222 * 5 4 3 7 7 N 1.37616 * 120.32048 * 359.97438 * 6 5 4 8 8 C 1.36850 * 119.35986 * 179.97438 * 6 5 4 9 9 N 1.41415 * 120.49728 * 179.97438 * 8 6 5 10 10 C 1.46901 * 111.00389 * 243.95491 * 9 8 6 11 11 C 1.50700 * 109.47093 * 163.82330 * 10 9 8 12 12 H 1.08001 * 120.00284 * 3.79171 * 11 10 9 13 13 C 1.37883 * 119.99916 * 183.79178 * 11 10 9 14 14 N 1.31518 * 119.99673 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00001 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46997 * 60.00000 * 15 13 11 17 17 H 1.48490 * 109.47174 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46862 * 300.00267 * 15 13 11 19 19 C 1.46899 * 110.99816 * 119.99809 * 9 8 6 20 20 C 1.52999 * 109.47702 * 287.43464 * 19 9 8 21 21 C 1.52993 * 109.47269 * 173.46590 * 20 19 9 22 22 C 1.53004 * 109.46801 * 293.46721 * 20 19 9 23 23 C 1.40648 * 119.00693 * 359.76378 * 8 6 5 24 24 O 1.21967 * 120.20493 * 180.24634 * 23 8 6 25 25 N 1.34756 * 119.59009 * 0.50028 * 23 8 6 26 26 H 0.96999 * 119.68390 * 179.73910 * 25 23 8 27 27 C 1.34519 * 120.62108 * 359.47220 * 25 23 8 28 28 O 1.21611 * 119.48197 * 180.27369 * 27 25 23 29 29 H 1.09004 * 109.47414 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47070 * 300.00178 * 1 2 3 31 31 H 1.09005 * 109.46648 * 60.00183 * 1 2 3 32 32 H 1.09006 * 109.47282 * 239.99613 * 2 1 3 33 33 H 1.09006 * 109.47091 * 120.00450 * 2 1 3 34 34 H 1.08997 * 109.46975 * 59.99322 * 3 2 1 35 35 H 1.09005 * 109.46983 * 299.99612 * 3 2 1 36 36 H 1.09002 * 109.46830 * 59.99778 * 4 3 2 37 37 H 1.09001 * 109.46655 * 300.00316 * 4 3 2 38 38 H 0.96996 * 120.00629 * 0.02562 * 7 6 5 39 39 H 0.97006 * 119.99962 * 180.02562 * 7 6 5 40 40 H 1.09001 * 109.47170 * 283.82665 * 10 9 8 41 41 H 1.09003 * 109.46779 * 43.82791 * 10 9 8 42 42 H 0.97001 * 119.99342 * 179.97438 * 14 13 11 43 43 H 1.09005 * 109.46697 * 47.43694 * 19 9 8 44 44 H 1.09005 * 109.47014 * 167.42885 * 19 9 8 45 45 H 1.09004 * 109.46693 * 53.46120 * 20 19 9 46 46 H 1.08994 * 109.47588 * 60.00180 * 21 20 19 47 47 H 1.09002 * 109.46910 * 179.97438 * 21 20 19 48 48 H 1.09001 * 109.47208 * 299.99404 * 21 20 19 49 49 H 1.08999 * 109.47030 * 174.86578 * 22 20 19 50 50 H 1.09000 * 109.46623 * 294.86069 * 22 20 19 51 51 H 1.08995 * 109.47406 * 54.85767 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0585 2.8235 0.0000 6 6 4.2866 3.4681 -1.1945 7 7 4.0587 2.8213 -2.3876 8 6 4.7423 4.7585 -1.1843 9 7 4.9854 5.4434 -2.3975 10 6 6.4094 5.7753 -2.5386 11 6 6.7021 6.1327 -3.9731 12 1 5.8989 6.1748 -4.6938 13 6 7.9954 6.4061 -4.3653 14 7 8.9735 6.3544 -3.4877 15 14 8.3581 6.8499 -6.1432 16 1 7.6050 8.0757 -6.5109 17 1 9.8136 7.0954 -6.3050 18 1 7.9441 5.7307 -7.0270 19 6 4.1515 6.6486 -2.4977 20 6 2.6994 6.2439 -2.7598 21 6 1.8059 7.4845 -2.7024 22 6 2.5912 5.6010 -4.1440 23 6 4.9611 5.3948 0.0507 24 8 5.3627 6.5459 0.0853 25 7 4.7292 4.7230 1.1957 26 1 4.8832 5.1593 2.0482 27 6 4.2810 3.4550 1.1673 28 8 4.0738 2.8699 2.2131 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6767 1.9562 0.8899 35 1 1.6768 1.9562 -0.8901 36 1 3.9338 0.9284 -0.8891 37 1 3.9330 0.9286 0.8909 38 1 3.7354 1.9068 -2.3896 39 1 4.2215 3.2799 -3.2268 40 1 6.6504 6.6225 -1.8966 41 1 7.0133 4.9156 -2.2479 42 1 9.8834 6.5464 -3.7637 43 1 4.2097 7.2092 -1.5647 44 1 4.5091 7.2707 -3.3183 45 1 2.3788 5.5297 -2.0014 46 1 2.1265 8.1987 -3.4608 47 1 0.7715 7.1962 -2.8896 48 1 1.8830 7.9425 -1.7162 49 1 1.5771 5.2307 -4.2942 50 1 2.8241 6.3425 -4.9082 51 1 3.2951 4.7720 -4.2156 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006949232.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:38 Heat of formation + Delta-G solvation = -48.824558 kcal Electronic energy + Delta-G solvation = -31944.630606 eV Core-core repulsion = 27879.155386 eV Total energy + Delta-G solvation = -4065.475221 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 6.22 seconds Orbital eigenvalues (eV) -42.09044 -39.07947 -38.11473 -36.62392 -35.74443 -34.36808 -33.85049 -33.33933 -32.23911 -30.02467 -28.33973 -26.76278 -26.62629 -24.61366 -24.52710 -23.48066 -22.50491 -21.56062 -20.92076 -19.85620 -19.25152 -17.97515 -17.33344 -16.66615 -16.33394 -16.16189 -15.81866 -15.59077 -15.23631 -14.95869 -14.66506 -14.45885 -14.17512 -13.69959 -13.60842 -13.43348 -13.40612 -13.13331 -12.91278 -12.63795 -12.23419 -11.97819 -11.82055 -11.71803 -11.64833 -11.49389 -11.33780 -11.09084 -10.96380 -10.95895 -10.81175 -10.70350 -10.50306 -10.24663 -9.98674 -9.96410 -9.85951 -9.72684 -9.61300 -9.17632 -8.35123 -7.34270 -7.20291 -5.92998 -3.94288 1.67372 1.98752 2.23765 3.36250 3.37605 3.41224 3.42773 3.70020 3.90893 4.36467 4.45274 4.48741 4.65781 4.71929 4.90416 5.08770 5.17279 5.23304 5.31515 5.40094 5.42312 5.45434 5.48751 5.57065 5.57344 5.71368 5.78420 5.83989 5.96311 5.97088 6.03461 6.12620 6.16769 6.24583 6.30095 6.45740 6.52845 6.59283 6.75693 6.87132 7.00934 7.11660 7.36274 7.42872 7.66572 7.76172 7.84713 7.90530 8.21847 8.30216 8.40957 8.75482 9.13214 9.68162 11.17403 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011844 B = 0.003764 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.505216 B = 7436.731062 C = 7765.100473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.139 4.139 4 C 0.109 3.891 5 N -0.542 5.542 6 C 0.473 3.527 7 N -0.827 5.827 8 C -0.176 4.176 9 N -0.450 5.450 10 C 0.197 3.803 11 C -0.504 4.504 12 H 0.062 0.938 13 C 0.056 3.944 14 N -0.896 5.896 15 Si 0.895 3.105 16 H -0.278 1.278 17 H -0.290 1.290 18 H -0.278 1.278 19 C 0.062 3.938 20 C -0.088 4.088 21 C -0.144 4.144 22 C -0.132 4.132 23 C 0.537 3.463 24 O -0.517 6.517 25 N -0.665 5.665 26 H 0.422 0.578 27 C 0.712 3.288 28 O -0.557 6.557 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.394 0.606 39 H 0.435 0.565 40 H 0.009 0.991 41 H 0.024 0.976 42 H 0.260 0.740 43 H 0.044 0.956 44 H 0.081 0.919 45 H 0.055 0.945 46 H 0.054 0.946 47 H 0.046 0.954 48 H 0.048 0.952 49 H 0.035 0.965 50 H 0.050 0.950 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.704 -12.431 4.475 21.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.178 4.178 4 C -0.013 4.013 5 N -0.270 5.270 6 C 0.260 3.740 7 N -0.372 5.372 8 C -0.286 4.286 9 N -0.172 5.172 10 C 0.073 3.927 11 C -0.543 4.543 12 H 0.080 0.920 13 C -0.146 4.146 14 N -0.536 5.536 15 Si 0.723 3.277 16 H -0.204 1.204 17 H -0.216 1.216 18 H -0.204 1.204 19 C -0.066 4.066 20 C -0.107 4.107 21 C -0.202 4.202 22 C -0.189 4.189 23 C 0.334 3.666 24 O -0.393 6.393 25 N -0.334 5.334 26 H 0.262 0.738 27 C 0.414 3.586 28 O -0.432 6.432 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.123 0.877 38 H 0.224 0.776 39 H 0.272 0.728 40 H 0.027 0.973 41 H 0.042 0.958 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.100 0.900 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.065 0.935 48 H 0.067 0.933 49 H 0.054 0.946 50 H 0.069 0.931 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.521 -12.492 4.574 21.212 hybrid contribution 0.662 0.748 -0.241 1.027 sum -15.859 -11.745 4.334 20.205 Atomic orbital electron populations 1.21752 0.95423 1.01731 1.02059 1.21432 0.96342 0.95595 1.02453 1.22042 0.93906 0.98178 1.03644 1.21842 0.95148 0.79277 1.05057 1.44619 1.63392 1.15387 1.03638 1.17335 0.88507 0.88721 0.79452 1.42264 1.72294 1.16832 1.05858 1.18219 1.25335 0.94075 0.90942 1.60059 1.09972 1.23483 1.23657 1.19772 0.80145 0.96101 0.96685 1.21118 0.92822 1.45955 0.94398 0.91988 1.24967 0.96336 0.95977 0.97285 1.69975 1.00082 1.49685 1.33814 0.86624 0.76965 0.78871 0.85245 1.20359 1.21556 1.20373 1.22157 0.90748 0.92111 1.01581 1.21067 0.95860 0.96389 0.97417 1.21795 0.98670 0.98289 1.01437 1.21700 0.99577 1.01195 0.96449 1.17939 0.77728 0.87176 0.83788 1.90941 1.45234 1.16744 1.86339 1.44821 1.62567 1.12905 1.13067 0.73755 1.15559 0.78256 0.81644 0.83163 1.91014 1.57312 1.65428 1.29470 0.92588 0.92635 0.92621 0.91635 0.91483 0.90739 0.91131 0.89237 0.87683 0.77619 0.72781 0.97268 0.95791 0.93036 0.93759 0.90049 0.92614 0.92709 0.93516 0.93286 0.94624 0.93107 0.91770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.12 -0.69 5.93 -26.73 -0.16 -0.85 16 3 C -0.14 -1.04 5.54 -26.73 -0.15 -1.19 16 4 C 0.11 0.93 4.92 -4.04 -0.02 0.91 16 5 N -0.54 -6.73 2.63 -120.60 -0.32 -7.04 16 6 C 0.47 6.61 7.50 -152.49 -1.14 5.46 16 7 N -0.83 -8.93 8.85 31.37 0.28 -8.65 16 8 C -0.18 -3.19 3.77 -83.02 -0.31 -3.51 16 9 N -0.45 -9.10 2.97 -171.97 -0.51 -9.61 16 10 C 0.20 5.14 4.23 -4.98 -0.02 5.12 16 11 C -0.50 -13.75 8.44 -34.44 -0.29 -14.04 16 12 H 0.06 1.63 7.55 -52.49 -0.40 1.23 16 13 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 15 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 C 0.06 1.21 3.97 -3.82 -0.02 1.19 16 20 C -0.09 -1.35 2.94 -90.62 -0.27 -1.62 16 21 C -0.14 -1.98 9.19 37.15 0.34 -1.63 16 22 C -0.13 -1.84 9.15 37.16 0.34 -1.50 16 23 C 0.54 10.36 7.25 -15.36 -0.11 10.25 16 24 O -0.52 -11.91 14.23 4.95 0.07 -11.84 16 25 N -0.67 -10.53 5.21 -18.74 -0.10 -10.63 16 26 H 0.42 5.98 8.87 -40.82 -0.36 5.62 16 27 C 0.71 10.54 8.38 -87.34 -0.73 9.80 16 28 O -0.56 -8.85 16.67 5.27 0.09 -8.76 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.55 6.43 -51.93 -0.33 0.22 16 37 H 0.10 0.94 7.38 -51.93 -0.38 0.56 16 38 H 0.39 2.82 6.74 -40.82 -0.28 2.54 16 39 H 0.43 5.38 6.59 -40.82 -0.27 5.11 16 40 H 0.01 0.28 6.90 -51.93 -0.36 -0.08 16 41 H 0.02 0.68 7.98 -51.93 -0.41 0.27 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.04 0.96 5.86 -51.93 -0.30 0.66 16 44 H 0.08 1.76 7.00 -51.93 -0.36 1.40 16 45 H 0.06 0.86 7.45 -51.93 -0.39 0.47 16 46 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 51 H 0.06 0.91 6.22 -51.93 -0.32 0.59 16 LS Contribution 402.28 15.07 6.06 6.06 Total: -1.00 -33.77 402.28 -9.36 -43.13 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -8.38 Total: 7.80 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: -2.27 Total: 9.34 kcal Atomic # 7 Polarization: -62.27 SS G_CDS: 0.09 Total: -62.18 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: 0.16 Total: -20.60 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.77 -9.36 -43.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006949232.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.692 kcal (2) G-P(sol) polarization free energy of solvation -33.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.23 seconds