Wall clock time and date at job start Tue Mar 31 2020 05:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36336 * 126.57122 * 2 1 4 4 S 1.76202 * 125.66946 * 359.92516 * 3 2 1 5 5 C 1.76201 * 99.99988 * 180.02562 * 4 3 2 6 6 H 1.08004 * 119.99675 * 0.02562 * 5 4 3 7 7 C 1.38586 * 119.99860 * 179.72711 * 5 4 3 8 8 N 1.31672 * 120.00378 * 0.26967 * 7 5 4 9 9 Si 1.86804 * 119.99862 * 180.27674 * 7 5 4 10 10 H 1.48503 * 109.47288 * 89.99437 * 9 7 5 11 11 H 1.48497 * 109.47081 * 210.00069 * 9 7 5 12 12 H 1.48499 * 109.47081 * 329.99781 * 9 7 5 13 13 N 1.31555 * 108.65631 * 180.19414 * 3 2 1 14 14 C 1.33546 * 109.61487 * 359.62320 * 13 3 2 15 15 C 1.36258 * 108.23678 * 0.37592 * 14 13 3 16 16 C 1.47720 * 126.68777 * 179.80211 * 15 14 13 17 17 C 1.39656 * 120.14066 * 19.86886 * 16 15 14 18 18 C 1.37923 * 119.85754 * 179.76765 * 17 16 15 19 19 C 1.38469 * 120.13612 * 0.51852 * 18 17 16 20 20 Br 1.89106 * 119.85432 * 179.76209 * 19 18 17 21 21 C 1.38467 * 120.28745 * 359.73425 * 19 18 17 22 22 C 1.37912 * 120.14343 * 0.02562 * 21 19 18 23 23 H 1.08994 * 109.47117 * 95.98293 * 1 2 3 24 24 H 1.08995 * 109.46664 * 215.98852 * 1 2 3 25 25 H 1.09001 * 109.46903 * 335.98558 * 1 2 3 26 26 H 0.97000 * 120.00261 * 179.97438 * 8 7 5 27 27 H 1.08004 * 125.88542 * 180.15874 * 14 13 3 28 28 H 1.08004 * 120.07133 * 0.02562 * 17 16 15 29 29 H 1.07989 * 119.93191 * 180.27517 * 18 17 16 30 30 H 1.08001 * 119.92490 * 179.97438 * 21 19 18 31 31 H 1.07997 * 120.07140 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.0949 0.0000 4 16 1.7399 2.7730 -0.0019 5 6 3.2991 3.5937 -0.0016 6 1 4.2126 3.0174 -0.0010 7 6 3.3533 4.9784 -0.0086 8 7 2.2396 5.6809 -0.0100 9 14 5.0063 5.8484 -0.0162 10 1 5.4417 6.0720 -1.4183 11 1 4.8810 7.1554 0.6777 12 1 6.0105 5.0095 0.6861 13 7 3.5291 0.6903 -0.0042 14 6 3.5687 -0.6446 0.0012 15 6 2.2878 -1.1092 0.0008 16 6 1.8621 -2.5238 0.0017 17 6 2.7474 -3.5223 0.4135 18 6 2.3422 -4.8406 0.4165 19 6 1.0643 -5.1761 0.0022 20 35 0.5193 -6.9870 0.0032 21 6 0.1835 -4.1914 -0.4123 22 6 0.5747 -2.8689 -0.4153 23 1 -0.3633 -0.1071 -1.0220 24 1 -0.3632 -0.8315 0.6039 25 1 -0.3633 0.9387 0.4182 26 1 2.2775 6.6502 -0.0145 27 1 4.4622 -1.2514 0.0020 28 1 3.7458 -3.2622 0.7329 29 1 3.0244 -5.6132 0.7390 30 1 -0.8118 -4.4597 -0.7346 31 1 -0.1133 -2.1018 -0.7385 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006973014.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:12 Heat of formation + Delta-G solvation = 79.939973 kcal Electronic energy + Delta-G solvation = -17596.756030 eV Core-core repulsion = 14630.273679 eV Total energy + Delta-G solvation = -2966.482351 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 337.978 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.27326 -39.01091 -33.79782 -32.86054 -32.62076 -31.17632 -30.30335 -27.54594 -26.65992 -25.63347 -23.10465 -22.69130 -20.72425 -20.07554 -17.98459 -17.16969 -16.13355 -15.53454 -15.36250 -15.20819 -14.92316 -14.26845 -13.74351 -13.57127 -13.42857 -13.17191 -12.95179 -12.66447 -12.47534 -11.51484 -11.30082 -11.20098 -11.17377 -11.09607 -11.01963 -10.46251 -10.18192 -9.65156 -9.34577 -9.21965 -9.19714 -8.99535 -8.90491 -8.05779 -6.56444 -6.45955 -4.17943 0.71308 1.16990 1.47107 2.46622 2.57977 3.18759 3.22976 3.30915 3.42361 3.51771 3.85668 4.01754 4.60430 4.67929 4.71691 4.95449 4.97895 5.06847 5.14901 5.21368 5.32615 5.45784 5.54310 5.68378 5.75343 5.93532 6.04572 6.05524 6.30560 6.63224 6.81634 7.18982 7.45126 7.59164 8.39147 8.62233 9.06676 10.62704 Molecular weight = 337.98amu Principal moments of inertia in cm(-1) A = 0.047309 B = 0.002288 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.714736 B =12233.407929 C =12783.277073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.457 5.457 3 C 0.220 3.780 4 S 0.119 5.881 5 C -0.525 4.525 6 H 0.106 0.894 7 C 0.072 3.928 8 N -0.880 5.880 9 Si 0.932 3.068 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.267 1.267 13 N -0.496 5.496 14 C 0.029 3.971 15 C -0.050 4.050 16 C 0.043 3.957 17 C -0.112 4.112 18 C -0.079 4.079 19 C -0.110 4.110 20 Br -0.063 7.063 21 C -0.079 4.079 22 C -0.136 4.136 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.093 0.907 26 H 0.273 0.727 27 H 0.164 0.836 28 H 0.136 0.864 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.826 -22.426 0.154 23.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.145 5.145 3 C -0.147 4.147 4 S 0.354 5.646 5 C -0.674 4.674 6 H 0.124 0.876 7 C -0.136 4.136 8 N -0.516 5.516 9 Si 0.758 3.242 10 H -0.200 1.200 11 H -0.207 1.207 12 H -0.191 1.191 13 N -0.216 5.216 14 C -0.126 4.126 15 C -0.165 4.165 16 C 0.041 3.959 17 C -0.132 4.132 18 C -0.099 4.099 19 C -0.190 4.190 20 Br 0.022 6.978 21 C -0.099 4.099 22 C -0.156 4.156 23 H 0.092 0.908 24 H 0.100 0.900 25 H 0.112 0.888 26 H 0.083 0.917 27 H 0.181 0.819 28 H 0.154 0.846 29 H 0.150 0.850 30 H 0.148 0.852 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.702 -21.789 0.149 22.797 hybrid contribution 1.491 -0.165 -0.051 1.501 sum -5.211 -21.953 0.098 22.564 Atomic orbital electron populations 1.22110 0.77363 1.04708 1.02900 1.45248 1.06411 1.04915 1.57880 1.26977 0.87599 0.97040 1.03051 1.83375 1.13031 0.81465 1.86715 1.23181 0.92822 0.93314 1.58051 0.87626 1.25069 0.98630 0.96191 0.93729 1.69968 1.26866 1.07486 1.47271 0.85930 0.81484 0.78199 0.78635 1.20014 1.20746 1.19109 1.70728 1.17857 1.10291 1.22756 1.22397 0.94642 0.91899 1.03684 1.19299 0.91164 0.86016 1.20021 1.18066 0.93243 0.89705 0.94930 1.21112 1.00114 0.91230 1.00717 1.20968 0.94173 0.96665 0.98049 1.21716 0.97445 0.90351 1.09465 1.96675 1.91257 1.11793 1.98057 1.20946 0.99023 0.91819 0.98078 1.21454 0.96337 0.96010 1.01796 0.90795 0.89993 0.88844 0.91733 0.81864 0.84638 0.84953 0.85157 0.84964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.96 9.25 59.85 0.55 1.52 16 2 N -0.46 -8.28 3.22 -120.06 -0.39 -8.67 16 3 C 0.22 4.91 7.95 -88.30 -0.70 4.21 16 4 S 0.12 2.92 21.09 -107.50 -2.27 0.65 16 5 C -0.53 -14.53 9.36 30.86 0.29 -14.24 16 6 H 0.11 3.01 6.88 -52.48 -0.36 2.64 16 7 C 0.07 1.96 5.49 -17.49 -0.10 1.86 16 8 N -0.88 -24.48 13.22 55.48 0.73 -23.75 16 9 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 13 N -0.50 -11.45 9.96 -13.08 -0.13 -11.58 16 14 C 0.03 0.54 11.26 -17.52 -0.20 0.35 16 15 C -0.05 -0.85 6.75 -81.88 -0.55 -1.40 16 16 C 0.04 0.58 5.86 -104.96 -0.62 -0.03 16 17 C -0.11 -1.31 9.58 -39.17 -0.38 -1.68 16 18 C -0.08 -0.82 9.77 -39.61 -0.39 -1.21 16 19 C -0.11 -1.18 6.23 -39.41 -0.25 -1.42 16 20 Br -0.06 -0.60 33.69 -68.01 -2.29 -2.89 16 21 C -0.08 -0.83 9.77 -39.62 -0.39 -1.22 16 22 C -0.14 -1.62 8.70 -39.17 -0.34 -1.96 16 23 H 0.07 0.85 7.72 -51.93 -0.40 0.45 16 24 H 0.08 0.90 6.62 -51.93 -0.34 0.56 16 25 H 0.09 1.26 7.56 -51.93 -0.39 0.87 16 26 H 0.27 7.08 8.31 -40.82 -0.34 6.75 16 27 H 0.16 2.48 7.66 -52.48 -0.40 2.08 16 28 H 0.14 1.39 7.40 -52.48 -0.39 1.00 16 29 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 31 H 0.13 1.42 5.08 -52.49 -0.27 1.15 16 LS Contribution 305.35 15.07 4.60 4.60 Total: -1.00 -30.65 305.35 -10.36 -41.01 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -2.54 Total: -0.23 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -3.06 Total: -15.23 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 0.22 Total: -44.00 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -2.27 Total: 0.65 kcal Atomic # 35 Polarization: -0.60 SS G_CDS: -2.29 Total: -2.89 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.65 -10.36 -41.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006973014.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.946 kcal (2) G-P(sol) polarization free energy of solvation -30.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds