Wall clock time and date at job start Tue Mar 31 2020 07:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38265 * 119.94421 * 2 1 4 4 C 1.38151 * 120.05200 * 179.97438 * 3 2 1 5 5 C 1.38729 * 119.94479 * 359.97438 * 4 3 2 6 6 O 1.35905 * 120.05554 * 179.97438 * 5 4 3 7 7 C 1.42898 * 117.00109 * 180.02562 * 6 5 4 8 8 C 1.52994 * 109.47354 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.47458 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.47096 * 180.02562 * 9 8 7 11 11 O 1.21278 * 120.00122 * 359.97438 * 10 9 8 12 12 N 1.34782 * 119.99587 * 180.02562 * 10 9 8 13 13 C 1.39239 * 119.99688 * 176.70100 * 12 10 9 14 14 C 1.39486 * 119.82945 * 217.48495 * 13 12 10 15 15 C 1.36378 * 120.16575 * 179.75967 * 14 13 12 16 16 C 1.40870 * 119.82714 * 0.50851 * 15 14 13 17 17 C 1.41151 * 120.16123 * 179.72271 * 16 15 14 18 18 H 1.08005 * 119.99682 * 157.97398 * 17 16 15 19 19 C 1.39904 * 120.00334 * 337.97002 * 17 16 15 20 20 N 1.30874 * 119.99607 * 327.61849 * 19 17 16 21 21 Si 1.86797 * 120.00455 * 147.61314 * 19 17 16 22 22 H 1.48498 * 109.47066 * 94.98487 * 21 19 17 23 23 H 1.48497 * 109.47404 * 214.98916 * 21 19 17 24 24 H 1.48505 * 109.46599 * 334.99223 * 21 19 17 25 25 C 1.40874 * 119.67242 * 359.74523 * 16 15 14 26 26 C 1.36369 * 119.82830 * 359.97438 * 25 16 15 27 27 C 1.38731 * 119.89120 * 0.26017 * 5 4 3 28 28 C 1.38152 * 119.94107 * 359.48765 * 27 5 4 29 29 H 1.09001 * 109.47222 * 89.99468 * 1 2 3 30 30 H 1.09002 * 109.47649 * 210.00072 * 1 2 3 31 31 H 1.09002 * 109.46836 * 329.99867 * 1 2 3 32 32 H 1.08002 * 119.97449 * 359.96128 * 3 2 1 33 33 H 1.07993 * 120.02422 * 179.97438 * 4 3 2 34 34 H 1.09004 * 109.46520 * 300.00067 * 7 6 5 35 35 H 1.08997 * 109.47588 * 59.99711 * 7 6 5 36 36 H 1.08998 * 109.47308 * 299.99909 * 8 7 6 37 37 H 1.09006 * 109.46932 * 59.99358 * 8 7 6 38 38 H 1.09002 * 109.46969 * 299.99615 * 9 8 7 39 39 H 1.08997 * 109.47311 * 59.99658 * 9 8 7 40 40 H 0.96991 * 120.00099 * 356.69337 * 12 10 9 41 41 H 1.07991 * 119.91518 * 0.02562 * 14 13 12 42 42 H 1.07998 * 120.08425 * 180.25114 * 15 14 13 43 43 H 0.97003 * 120.00275 * 179.97438 * 20 19 17 44 44 H 1.07997 * 120.08480 * 179.97438 * 25 16 15 45 45 H 1.08003 * 119.91402 * 179.97438 * 26 25 16 46 46 H 1.08000 * 120.02991 * 179.72168 * 27 5 4 47 47 H 1.08000 * 119.97199 * 180.24907 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5786 1.2007 0.0005 5 6 4.2734 -0.0001 0.0016 6 8 5.6324 -0.0002 0.0016 7 6 6.2811 -1.2734 0.0022 8 6 7.7979 -1.0731 0.0027 9 6 8.4925 -2.4363 0.0040 10 6 9.9865 -2.2389 0.0052 11 8 10.4501 -1.1182 0.0046 12 7 10.8075 -3.3078 0.0059 13 6 12.1863 -3.1266 -0.0624 14 6 12.9668 -4.0136 -0.8039 15 6 14.3173 -3.8398 -0.8795 16 6 14.9250 -2.7674 -0.1975 17 6 16.3229 -2.5843 -0.2661 18 1 16.7507 -1.6131 -0.0656 19 6 17.1542 -3.6608 -0.5938 20 7 16.8243 -4.8752 -0.2346 21 14 18.7349 -3.3648 -1.5441 22 1 19.8680 -3.2379 -0.5927 23 1 18.9831 -4.5069 -2.4601 24 1 18.6102 -2.1140 -2.3348 25 6 14.1307 -1.8789 0.5536 26 6 12.7808 -2.0622 0.6151 27 6 3.5786 -1.2009 -0.0033 28 6 2.1970 -1.1981 0.0014 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6558 2.1326 -0.0006 33 1 4.1172 2.1367 0.0001 34 1 5.9881 -1.8300 0.8925 35 1 5.9883 -1.8309 -0.8875 36 1 8.0912 -0.5163 -0.8872 37 1 8.0904 -0.5158 0.8927 38 1 8.1992 -2.9927 0.8943 39 1 8.2000 -2.9940 -0.8857 40 1 10.4378 -4.2032 0.0541 41 1 12.4999 -4.8376 -1.3229 42 1 14.9198 -4.5250 -1.4572 43 1 17.4004 -5.6217 -0.4621 44 1 14.5896 -1.0547 1.0794 45 1 12.1705 -1.3821 1.1909 46 1 4.1172 -2.1370 -0.0070 47 1 1.6556 -2.1326 0.0017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008125901.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:05 Heat of formation + Delta-G solvation = -46.109542 kcal Electronic energy + Delta-G solvation = -26521.646920 eV Core-core repulsion = 22633.586938 eV Total energy + Delta-G solvation = -3888.059982 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.44557 -39.66187 -38.08082 -37.29367 -34.57030 -33.93225 -33.03001 -32.12052 -31.34072 -29.61014 -29.23659 -27.75354 -26.33155 -24.86505 -23.47068 -22.16161 -21.49037 -21.20555 -20.60671 -19.62244 -18.44723 -17.42527 -16.90745 -16.60756 -16.37329 -15.94949 -15.62709 -15.24646 -15.18819 -14.68317 -14.12051 -14.07355 -13.96893 -13.81086 -13.62303 -13.37150 -13.02428 -12.69651 -12.47034 -12.37031 -12.27085 -12.09661 -11.96528 -11.81634 -11.63941 -11.48417 -11.29069 -11.15393 -10.99393 -10.95975 -10.74365 -10.54509 -10.17439 -9.74721 -9.44316 -9.32691 -9.06854 -8.70152 -8.33196 -7.56152 -7.16280 -6.89846 -4.28514 1.01855 1.10958 2.56891 2.85731 2.95527 3.04313 3.08825 3.11769 3.35001 3.43098 3.80846 3.88334 4.43541 4.48651 4.52617 4.62909 4.68521 4.70795 4.82567 4.93389 5.01189 5.06424 5.16671 5.23306 5.25154 5.32214 5.38816 5.49706 5.57533 5.67718 5.72371 5.92063 5.97090 6.04861 6.14340 6.17606 6.28269 6.41603 6.49014 6.76395 6.94598 6.99012 7.13520 7.17725 7.27857 7.55508 7.68450 7.88334 8.00987 8.24258 8.28300 8.53882 8.76659 8.82818 8.99157 10.00679 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.047044 B = 0.001395 C = 0.001372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.040804 B =20071.260284 C =20407.032277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.131 4.131 3 C -0.081 4.081 4 C -0.150 4.150 5 C 0.129 3.871 6 O -0.312 6.312 7 C 0.061 3.939 8 C -0.103 4.103 9 C -0.135 4.135 10 C 0.497 3.503 11 O -0.532 6.532 12 N -0.650 5.650 13 C -0.024 4.024 14 C -0.102 4.102 15 C -0.171 4.171 16 C 0.113 3.887 17 C -0.465 4.465 18 H 0.082 0.918 19 C 0.089 3.911 20 N -0.769 5.769 21 Si 0.896 3.104 22 H -0.269 1.269 23 H -0.274 1.274 24 H -0.257 1.257 25 C -0.224 4.224 26 C -0.065 4.065 27 C -0.206 4.206 28 C -0.081 4.081 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.127 0.873 33 H 0.131 0.869 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.394 0.606 41 H 0.089 0.911 42 H 0.107 0.893 43 H 0.283 0.717 44 H 0.094 0.906 45 H 0.102 0.898 46 H 0.128 0.872 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.662 2.099 -0.168 26.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.131 4.131 3 C -0.099 4.099 4 C -0.169 4.169 5 C 0.083 3.917 6 O -0.226 6.226 7 C -0.014 4.014 8 C -0.141 4.141 9 C -0.175 4.175 10 C 0.283 3.717 11 O -0.409 6.409 12 N -0.293 5.293 13 C -0.116 4.116 14 C -0.122 4.122 15 C -0.191 4.191 16 C 0.110 3.890 17 C -0.493 4.493 18 H 0.100 0.900 19 C -0.133 4.133 20 N -0.392 5.392 21 Si 0.719 3.281 22 H -0.194 1.194 23 H -0.199 1.199 24 H -0.181 1.181 25 C -0.244 4.244 26 C -0.085 4.085 27 C -0.225 4.225 28 C -0.099 4.099 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.145 0.855 33 H 0.149 0.851 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.227 0.773 41 H 0.107 0.893 42 H 0.125 0.875 43 H 0.094 0.906 44 H 0.113 0.887 45 H 0.120 0.880 46 H 0.146 0.854 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -26.129 2.807 -0.157 26.279 hybrid contribution 0.567 -0.877 -0.405 1.120 sum -25.561 1.930 -0.562 25.640 Atomic orbital electron populations 1.20713 0.91140 1.02588 1.02110 1.19828 0.96201 0.93087 1.03968 1.20854 0.92980 0.97784 0.98332 1.20475 0.93784 0.96501 1.06105 1.19058 0.82563 0.94148 0.95898 1.86092 1.16044 1.32193 1.88242 1.22873 0.93451 0.83792 1.01325 1.21219 0.90297 0.97032 1.05563 1.21493 0.93031 0.98729 1.04285 1.20419 0.88345 0.85254 0.77641 1.90703 1.77373 1.23755 1.49115 1.42954 1.05794 1.08344 1.72197 1.17063 0.80604 1.03697 1.10230 1.20168 0.94566 0.98468 0.99008 1.20614 0.92499 1.01663 1.04317 1.17600 0.93142 0.90214 0.88069 1.19517 0.91394 0.96593 1.41804 0.89992 1.25938 0.99888 0.94336 0.93155 1.69947 1.37302 1.00713 1.31267 0.86511 0.81227 0.79816 0.80545 1.19437 1.19878 1.18071 1.20604 0.93061 1.04140 1.06621 1.20298 0.94466 0.96325 0.97415 1.21281 0.95369 0.97199 1.08658 1.20833 0.93298 0.97688 0.98090 0.91475 0.91766 0.91706 0.85459 0.85102 0.91933 0.91925 0.89851 0.89882 0.88999 0.88932 0.77285 0.89308 0.87503 0.90597 0.88739 0.87992 0.85380 0.85897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.57 10.01 36.00 0.36 -0.21 16 2 C -0.13 -1.01 5.88 -104.60 -0.62 -1.63 16 3 C -0.08 -0.66 9.69 -39.60 -0.38 -1.04 16 4 C -0.15 -1.44 9.99 -39.43 -0.39 -1.84 16 5 C 0.13 1.36 6.69 -39.22 -0.26 1.10 16 6 O -0.31 -3.63 10.14 -19.44 -0.20 -3.83 16 7 C 0.06 0.56 4.74 37.15 0.18 0.74 16 8 C -0.10 -1.16 4.87 -26.74 -0.13 -1.29 16 9 C -0.13 -1.42 5.70 -27.88 -0.16 -1.58 16 10 C 0.50 8.23 7.64 -10.98 -0.08 8.15 16 11 O -0.53 -11.24 13.60 5.56 0.08 -11.16 16 12 N -0.65 -11.15 5.30 -9.74 -0.05 -11.21 16 13 C -0.02 -0.53 6.25 -83.57 -0.52 -1.06 16 14 C -0.10 -2.32 9.90 -39.79 -0.39 -2.72 16 15 C -0.17 -4.37 8.74 -39.26 -0.34 -4.71 16 16 C 0.11 3.02 5.57 -106.80 -0.60 2.42 16 17 C -0.47 -12.32 8.94 -37.85 -0.34 -12.66 16 18 H 0.08 2.11 8.02 -52.48 -0.42 1.69 16 19 C 0.09 2.18 4.77 -17.34 -0.08 2.10 16 20 N -0.77 -19.35 11.78 55.55 0.65 -18.69 16 21 Si 0.90 18.17 29.66 -169.99 -5.04 13.13 16 22 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 23 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 24 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 25 C -0.22 -5.76 9.74 -39.26 -0.38 -6.14 16 26 C -0.07 -1.58 8.59 -39.79 -0.34 -1.92 16 27 C -0.21 -1.85 9.04 -39.43 -0.36 -2.21 16 28 C -0.08 -0.65 9.69 -39.60 -0.38 -1.03 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.29 8.08 -51.93 -0.42 -0.13 16 31 H 0.06 0.29 8.08 -51.93 -0.42 -0.13 16 32 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 33 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.06 0.48 7.67 -51.93 -0.40 0.09 16 35 H 0.06 0.49 7.65 -51.93 -0.40 0.09 16 36 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 37 H 0.08 1.06 8.10 -51.93 -0.42 0.63 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.39 5.21 8.82 -40.82 -0.36 4.84 16 41 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 42 H 0.11 2.76 6.52 -52.49 -0.34 2.42 16 43 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 44 H 0.09 2.31 8.06 -52.49 -0.42 1.89 16 45 H 0.10 2.44 6.45 -52.48 -0.34 2.10 16 46 H 0.13 0.93 6.30 -52.49 -0.33 0.60 16 47 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 395.05 15.07 5.95 5.95 Total: -1.00 -31.51 395.05 -10.63 -42.14 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -6.79 Total: 9.20 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: -5.23 Total: -25.53 kcal Atomic # 7 Polarization: -30.50 SS G_CDS: 0.60 Total: -29.90 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.12 Total: -14.99 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.04 Total: 13.13 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.51 -10.63 -42.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008125901.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.974 kcal (2) G-P(sol) polarization free energy of solvation -31.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds