Wall clock time and date at job start Tue Mar 31 2020 07:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38265 * 119.94421 * 2 1 4 4 C 1.38151 * 120.05200 * 179.97438 * 3 2 1 5 5 C 1.38729 * 119.94479 * 359.97438 * 4 3 2 6 6 O 1.35905 * 120.05554 * 179.97438 * 5 4 3 7 7 C 1.42898 * 117.00109 * 180.02562 * 6 5 4 8 8 C 1.52994 * 109.47354 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.47458 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.47096 * 180.02562 * 9 8 7 11 11 O 1.21278 * 120.00122 * 359.97438 * 10 9 8 12 12 N 1.34782 * 119.99587 * 180.02562 * 10 9 8 13 13 C 1.39239 * 119.99688 * 176.70100 * 12 10 9 14 14 C 1.39486 * 119.82945 * 217.48495 * 13 12 10 15 15 C 1.36378 * 120.16575 * 179.75967 * 14 13 12 16 16 C 1.40870 * 119.82714 * 0.50851 * 15 14 13 17 17 C 1.41151 * 120.16123 * 179.72271 * 16 15 14 18 18 H 1.08005 * 119.99682 * 157.97398 * 17 16 15 19 19 C 1.39904 * 120.00334 * 337.97002 * 17 16 15 20 20 N 1.30874 * 119.99607 * 327.61849 * 19 17 16 21 21 Si 1.86797 * 120.00455 * 147.61314 * 19 17 16 22 22 H 1.48498 * 109.47066 * 94.98487 * 21 19 17 23 23 H 1.48497 * 109.47404 * 214.98916 * 21 19 17 24 24 H 1.48505 * 109.46599 * 334.99223 * 21 19 17 25 25 C 1.40874 * 119.67242 * 359.74523 * 16 15 14 26 26 C 1.36369 * 119.82830 * 359.97438 * 25 16 15 27 27 C 1.38731 * 119.89120 * 0.26017 * 5 4 3 28 28 C 1.38152 * 119.94107 * 359.48765 * 27 5 4 29 29 H 1.09001 * 109.47222 * 89.99468 * 1 2 3 30 30 H 1.09002 * 109.47649 * 210.00072 * 1 2 3 31 31 H 1.09002 * 109.46836 * 329.99867 * 1 2 3 32 32 H 1.08002 * 119.97449 * 359.96128 * 3 2 1 33 33 H 1.07993 * 120.02422 * 179.97438 * 4 3 2 34 34 H 1.09004 * 109.46520 * 300.00067 * 7 6 5 35 35 H 1.08997 * 109.47588 * 59.99711 * 7 6 5 36 36 H 1.08998 * 109.47308 * 299.99909 * 8 7 6 37 37 H 1.09006 * 109.46932 * 59.99358 * 8 7 6 38 38 H 1.09002 * 109.46969 * 299.99615 * 9 8 7 39 39 H 1.08997 * 109.47311 * 59.99658 * 9 8 7 40 40 H 0.96991 * 120.00099 * 356.69337 * 12 10 9 41 41 H 1.07991 * 119.91518 * 0.02562 * 14 13 12 42 42 H 1.07998 * 120.08425 * 180.25114 * 15 14 13 43 43 H 0.97003 * 120.00275 * 179.97438 * 20 19 17 44 44 H 1.07997 * 120.08480 * 179.97438 * 25 16 15 45 45 H 1.08003 * 119.91402 * 179.97438 * 26 25 16 46 46 H 1.08000 * 120.02991 * 179.72168 * 27 5 4 47 47 H 1.08000 * 119.97199 * 180.24907 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5786 1.2007 0.0005 5 6 4.2734 -0.0001 0.0016 6 8 5.6324 -0.0002 0.0016 7 6 6.2811 -1.2734 0.0022 8 6 7.7979 -1.0731 0.0027 9 6 8.4925 -2.4363 0.0040 10 6 9.9865 -2.2389 0.0052 11 8 10.4501 -1.1182 0.0046 12 7 10.8075 -3.3078 0.0059 13 6 12.1863 -3.1266 -0.0624 14 6 12.9668 -4.0136 -0.8039 15 6 14.3173 -3.8398 -0.8795 16 6 14.9250 -2.7674 -0.1975 17 6 16.3229 -2.5843 -0.2661 18 1 16.7507 -1.6131 -0.0656 19 6 17.1542 -3.6608 -0.5938 20 7 16.8243 -4.8752 -0.2346 21 14 18.7349 -3.3648 -1.5441 22 1 19.8680 -3.2379 -0.5927 23 1 18.9831 -4.5069 -2.4601 24 1 18.6102 -2.1140 -2.3348 25 6 14.1307 -1.8789 0.5536 26 6 12.7808 -2.0622 0.6151 27 6 3.5786 -1.2009 -0.0033 28 6 2.1970 -1.1981 0.0014 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6558 2.1326 -0.0006 33 1 4.1172 2.1367 0.0001 34 1 5.9881 -1.8300 0.8925 35 1 5.9883 -1.8309 -0.8875 36 1 8.0912 -0.5163 -0.8872 37 1 8.0904 -0.5158 0.8927 38 1 8.1992 -2.9927 0.8943 39 1 8.2000 -2.9940 -0.8857 40 1 10.4378 -4.2032 0.0541 41 1 12.4999 -4.8376 -1.3229 42 1 14.9198 -4.5250 -1.4572 43 1 17.4004 -5.6217 -0.4621 44 1 14.5896 -1.0547 1.0794 45 1 12.1705 -1.3821 1.1909 46 1 4.1172 -2.1370 -0.0070 47 1 1.6556 -2.1326 0.0017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008125901.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:04 Heat of formation + Delta-G solvation = -62.695392 kcal Electronic energy + Delta-G solvation = -26522.366137 eV Core-core repulsion = 22633.586938 eV Total energy + Delta-G solvation = -3888.779199 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.25663 -41.00398 -39.15104 -38.67288 -36.23426 -34.94508 -34.73035 -32.73264 -31.95091 -31.48688 -30.99435 -28.75896 -27.08159 -26.40009 -24.35654 -23.44763 -22.82801 -22.25387 -21.88669 -21.04492 -19.33893 -19.18429 -18.24181 -17.83436 -17.41125 -17.03509 -16.78578 -16.34968 -16.22835 -15.79786 -15.37017 -15.24047 -15.08522 -14.64795 -14.54014 -14.39541 -14.23000 -14.18049 -13.97256 -13.80122 -13.39881 -13.14692 -12.92612 -12.91132 -12.81738 -12.68596 -12.40895 -12.37501 -12.33038 -12.10604 -11.91383 -11.63544 -11.59102 -11.47247 -11.14046 -10.74140 -10.45095 -9.94662 -9.49084 -9.01672 -8.97872 -8.73443 -6.24512 0.40062 0.47083 0.82348 1.12301 1.36764 1.42503 1.54421 1.83616 2.07426 2.19349 2.57004 2.65471 2.80743 3.66685 3.73022 3.87906 3.92188 3.96167 4.04613 4.11448 4.25420 4.36663 4.39384 4.45161 4.45528 4.47554 4.49913 4.65858 4.72141 4.85583 4.89855 4.90365 5.04767 5.09947 5.11848 5.15171 5.17733 5.25381 5.28662 5.39597 5.42575 5.45475 5.63185 5.70692 5.87436 5.91059 6.02007 6.09430 6.35058 6.49942 6.60575 6.78340 6.87964 6.98601 7.47858 8.19558 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.047044 B = 0.001395 C = 0.001372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.040804 B =20071.260284 C =20407.032277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.135 4.135 3 C -0.088 4.088 4 C -0.170 4.170 5 C 0.103 3.897 6 O -0.339 6.339 7 C 0.064 3.936 8 C -0.100 4.100 9 C -0.118 4.118 10 C 0.493 3.507 11 O -0.583 6.583 12 N -0.644 5.644 13 C -0.009 4.009 14 C -0.100 4.100 15 C -0.189 4.189 16 C 0.082 3.918 17 C -0.507 4.507 18 H 0.073 0.927 19 C 0.054 3.946 20 N -0.798 5.798 21 Si 0.971 3.029 22 H -0.259 1.259 23 H -0.259 1.259 24 H -0.263 1.263 25 C -0.248 4.248 26 C -0.078 4.078 27 C -0.211 4.211 28 C -0.088 4.088 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.146 0.854 33 H 0.127 0.873 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.418 0.582 41 H 0.126 0.874 42 H 0.099 0.901 43 H 0.295 0.705 44 H 0.089 0.911 45 H 0.100 0.900 46 H 0.146 0.854 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.240 -0.003 -0.903 29.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.135 4.135 3 C -0.106 4.106 4 C -0.189 4.189 5 C 0.058 3.942 6 O -0.254 6.254 7 C -0.011 4.011 8 C -0.138 4.138 9 C -0.157 4.157 10 C 0.282 3.718 11 O -0.463 6.463 12 N -0.289 5.289 13 C -0.103 4.103 14 C -0.120 4.120 15 C -0.209 4.209 16 C 0.080 3.920 17 C -0.535 4.535 18 H 0.091 0.909 19 C -0.166 4.166 20 N -0.421 5.421 21 Si 0.791 3.209 22 H -0.184 1.184 23 H -0.183 1.183 24 H -0.187 1.187 25 C -0.268 4.268 26 C -0.098 4.098 27 C -0.229 4.229 28 C -0.106 4.106 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.164 0.836 33 H 0.145 0.855 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.255 0.745 41 H 0.144 0.856 42 H 0.117 0.883 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.118 0.882 46 H 0.163 0.837 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -28.754 0.668 -0.879 28.775 hybrid contribution 1.170 -0.183 -0.125 1.191 sum -27.584 0.485 -1.004 27.607 Atomic orbital electron populations 1.20763 0.89268 1.03543 1.02868 1.20215 0.97678 0.92886 1.02741 1.21131 0.92471 0.99056 0.97902 1.20680 0.94725 0.96495 1.06998 1.19302 0.82222 0.95159 0.97511 1.86041 1.16946 1.33596 1.88815 1.22889 0.91501 0.83429 1.03244 1.21129 0.92257 0.97135 1.03314 1.21483 0.87541 0.98904 1.07786 1.21549 0.90770 0.84028 0.75429 1.90697 1.78772 1.25891 1.50978 1.42905 1.03669 1.10132 1.72192 1.17151 0.83224 1.01966 1.07910 1.20467 0.93688 0.99294 0.98531 1.20652 0.93803 1.01570 1.04857 1.17915 0.93840 0.91252 0.89011 1.19707 0.92025 0.97109 1.44610 0.90874 1.26701 1.03097 0.93621 0.93179 1.69936 1.38989 1.01582 1.31601 0.85382 0.76846 0.79644 0.79039 1.18382 1.18316 1.18680 1.20727 0.94014 1.04558 1.07463 1.20413 0.93961 0.97326 0.98101 1.21517 0.95964 0.97216 1.08214 1.21187 0.93166 0.98804 0.97437 0.90705 0.90739 0.90908 0.83623 0.85459 0.89883 0.89918 0.92294 0.92190 0.85229 0.85282 0.74466 0.85634 0.88327 0.89426 0.89260 0.88219 0.83659 0.83629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.01 71.23 0.71 -0.13 16 2 C -0.13 -1.82 5.88 -19.85 -0.12 -1.94 16 3 C -0.09 -1.33 9.69 22.26 0.22 -1.11 16 4 C -0.17 -3.29 9.99 22.37 0.22 -3.07 16 5 C 0.10 2.12 6.69 22.51 0.15 2.27 16 6 O -0.34 -7.80 10.14 -92.48 -0.94 -8.74 16 7 C 0.06 1.04 4.74 71.98 0.34 1.39 16 8 C -0.10 -2.14 4.87 30.59 0.15 -1.99 16 9 C -0.12 -2.07 5.70 29.85 0.17 -1.90 16 10 C 0.49 15.51 7.64 87.66 0.67 16.18 16 11 O -0.58 -24.88 13.60 -3.02 -0.04 -24.92 16 12 N -0.64 -20.59 5.30 -303.10 -1.61 -22.19 16 13 C -0.01 -0.40 6.25 38.57 0.24 -0.16 16 14 C -0.10 -4.46 9.90 22.14 0.22 -4.24 16 15 C -0.19 -9.82 8.74 22.48 0.20 -9.62 16 16 C 0.08 4.61 5.57 -21.27 -0.12 4.49 16 17 C -0.51 -28.04 8.94 23.39 0.21 -27.83 16 18 H 0.07 3.99 8.02 -2.91 -0.02 3.97 16 19 C 0.05 2.69 4.77 85.24 0.41 3.09 16 20 N -0.80 -40.57 11.78 21.82 0.26 -40.31 16 21 Si 0.97 37.59 29.66 68.60 2.03 39.62 16 22 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 23 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 24 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 25 C -0.25 -13.37 9.74 22.48 0.22 -13.15 16 26 C -0.08 -3.89 8.59 22.13 0.19 -3.70 16 27 C -0.21 -3.36 9.04 22.37 0.20 -3.15 16 28 C -0.09 -1.19 9.69 22.26 0.22 -0.98 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.44 8.08 -2.39 -0.02 0.42 16 31 H 0.07 0.46 8.08 -2.39 -0.02 0.44 16 32 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 33 H 0.13 2.37 8.06 -2.91 -0.02 2.34 16 34 H 0.08 1.01 7.67 -2.38 -0.02 1.00 16 35 H 0.08 1.02 7.65 -2.39 -0.02 1.00 16 36 H 0.06 1.53 8.10 -2.39 -0.02 1.51 16 37 H 0.06 1.54 8.10 -2.38 -0.02 1.52 16 38 H 0.13 1.43 8.14 -2.39 -0.02 1.42 16 39 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.42 9.43 8.82 -92.72 -0.82 8.61 16 41 H 0.13 4.60 8.06 -2.92 -0.02 4.57 16 42 H 0.10 5.19 6.52 -2.91 -0.02 5.17 16 43 H 0.29 13.25 8.30 -92.71 -0.77 12.48 16 44 H 0.09 4.70 8.06 -2.91 -0.02 4.68 16 45 H 0.10 4.94 6.45 -2.91 -0.02 4.92 16 46 H 0.15 1.66 6.30 -2.91 -0.02 1.65 16 47 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 Total: -1.00 -73.26 395.05 4.37 -68.89 By element: Atomic # 1 Polarization: 33.05 SS G_CDS: 0.16 Total: 33.21 kcal Atomic # 6 Polarization: -50.06 SS G_CDS: 4.50 Total: -45.56 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: -1.35 Total: -62.50 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -0.98 Total: -33.66 kcal Atomic # 14 Polarization: 37.59 SS G_CDS: 2.03 Total: 39.62 kcal Total: -73.26 4.37 -68.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008125901.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.197 kcal (2) G-P(sol) polarization free energy of solvation -73.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds