Wall clock time and date at job start Tue Mar 31 2020 07:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33704 * 122.07200 * 2 1 4 4 S 1.76238 * 108.25587 * 179.97438 * 3 2 1 5 5 C 1.76174 * 89.85102 * 359.97438 * 4 3 2 6 6 C 1.47461 * 125.47998 * 180.25954 * 5 4 3 7 7 C 1.43197 * 120.00119 * 179.69317 * 6 5 4 8 8 N 5.00168 * 114.82527 * 179.76715 * 2 1 3 9 9 C 1.36482 * 120.00244 * 359.69648 * 6 5 4 10 10 C 1.46592 * 120.00371 * 173.20161 * 9 6 5 11 11 C 1.40170 * 120.10702 * 329.93494 * 10 9 6 12 12 C 1.37081 * 119.88714 * 179.78865 * 11 10 9 13 13 C 1.39252 * 120.10822 * 0.48694 * 12 11 10 14 14 N 1.39184 * 119.88945 * 179.76878 * 13 12 11 15 15 C 1.46501 * 120.00309 * 179.97438 * 14 13 12 16 16 C 1.46505 * 119.99761 * 359.97430 * 14 13 12 17 17 C 1.50694 * 109.47120 * 90.00461 * 16 14 13 18 18 H 1.08001 * 119.99875 * 0.02562 * 17 16 14 19 19 C 1.37879 * 120.00322 * 179.97438 * 17 16 14 20 20 N 1.31512 * 119.99674 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00198 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47161 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47139 * 119.99969 * 21 19 17 24 24 H 1.48501 * 109.46992 * 239.99806 * 21 19 17 25 25 C 1.39249 * 120.22301 * 359.74305 * 13 12 11 26 26 C 1.37087 * 120.10682 * 0.02562 * 25 13 12 27 27 N 1.30407 * 109.04210 * 0.02562 * 5 4 3 28 28 H 1.08997 * 109.47843 * 270.00490 * 1 2 3 29 29 H 1.09001 * 109.46895 * 30.00394 * 1 2 3 30 30 H 1.09000 * 109.47051 * 150.00119 * 1 2 3 31 31 H 1.08004 * 125.87210 * 359.97438 * 3 2 1 32 32 H 1.07999 * 119.99665 * 353.20596 * 9 6 5 33 33 H 1.08001 * 120.05608 * 0.02562 * 11 10 9 34 34 H 1.08001 * 119.94690 * 180.25208 * 12 11 10 35 35 H 1.08999 * 109.47460 * 89.99394 * 15 14 13 36 36 H 1.09002 * 109.47258 * 210.00064 * 15 14 13 37 37 H 1.09005 * 109.46826 * 329.99751 * 15 14 13 38 38 H 1.09003 * 109.46896 * 210.00151 * 16 14 13 39 39 H 1.08995 * 109.47310 * 329.99944 * 16 14 13 40 40 H 0.96995 * 119.99809 * 180.02562 * 20 19 17 41 41 H 1.07990 * 119.94573 * 180.02562 * 25 13 12 42 42 H 1.08000 * 120.05131 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2170 1.1330 0.0000 4 16 3.9283 0.7121 0.0007 5 6 3.5032 -0.9975 0.0018 6 6 4.4619 -2.1179 0.0082 7 6 3.9852 -3.4682 0.0150 8 7 3.6070 -4.5395 0.0184 9 6 5.8037 -1.8680 0.0078 10 6 6.7551 -2.9722 0.1644 11 6 6.3998 -4.1064 0.9075 12 6 7.2913 -5.1382 1.0475 13 6 8.5519 -5.0565 0.4614 14 7 9.4553 -6.1047 0.6104 15 6 10.7819 -6.0216 -0.0056 16 6 9.0796 -7.2912 1.3834 17 6 8.4413 -8.3049 0.4692 18 1 8.3273 -8.0873 -0.5825 19 6 8.0038 -9.5106 0.9751 20 7 8.1431 -9.7757 2.2557 21 14 7.2132 -10.7674 -0.1583 22 1 7.1740 -10.2305 -1.5423 23 1 8.0068 -12.0224 -0.1360 24 1 5.8297 -11.0484 0.3025 25 6 8.9114 -3.9298 -0.2738 26 6 8.0251 -2.8948 -0.4235 27 7 2.2042 -1.1129 0.0010 28 1 -0.3635 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.8114 2.1340 -0.0004 32 1 6.1645 -0.8566 -0.1079 33 1 5.4238 -4.1689 1.3659 34 1 7.0171 -6.0142 1.6164 35 1 11.4795 -5.5620 0.6945 36 1 11.1284 -7.0237 -0.2587 37 1 10.7248 -5.4174 -0.9110 38 1 9.9696 -7.7238 1.8406 39 1 8.3720 -7.0081 2.1626 40 1 7.8356 -10.6240 2.6115 41 1 9.8899 -3.8714 -0.7267 42 1 8.3050 -2.0212 -0.9935 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008207364.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:28 Heat of formation + Delta-G solvation = 126.854913 kcal Electronic energy + Delta-G solvation = -24833.864236 eV Core-core repulsion = 21292.517083 eV Total energy + Delta-G solvation = -3541.347153 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.110 amu Computer time = 3.37 seconds Orbital eigenvalues (eV) -39.93243 -39.36953 -37.28536 -35.69806 -34.09846 -32.80943 -31.70948 -30.84683 -29.13825 -27.98984 -27.81119 -25.88235 -24.33947 -23.19650 -22.60258 -21.48759 -20.34023 -19.38904 -18.24297 -17.28708 -16.65217 -16.38667 -15.76607 -15.15932 -15.10568 -14.74783 -14.41140 -14.18004 -13.98715 -13.90088 -13.59336 -13.43214 -13.23646 -12.91611 -12.72753 -12.62514 -12.49958 -12.26317 -12.19449 -12.16029 -11.62158 -11.51056 -11.37516 -11.23462 -11.04054 -10.79725 -10.55994 -10.29018 -10.04199 -9.89815 -9.89347 -9.54517 -9.12460 -8.64653 -8.57840 -8.27186 -6.61558 -6.13621 -4.27048 -0.03707 1.00619 1.08944 1.46693 1.90821 2.22555 2.67068 3.03940 3.23049 3.32143 3.36162 3.70212 3.76379 3.88160 4.14895 4.29154 4.35786 4.68703 4.89461 4.98277 5.03718 5.13662 5.19367 5.21716 5.34183 5.40954 5.49964 5.59196 5.65853 5.76525 5.81718 5.86191 6.02593 6.05471 6.14999 6.20310 6.32941 6.68792 6.75288 6.87423 7.00353 7.17609 7.27211 7.55251 7.70310 7.84178 7.96159 8.03612 8.17651 8.80444 9.40804 10.87080 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.015109 B = 0.002559 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.748114 B =10940.620076 C =12408.046202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.076 3.924 3 C -0.263 4.263 4 S 0.087 5.913 5 C 0.146 3.854 6 C -0.054 4.054 7 C 0.270 3.730 8 N -0.411 5.411 9 C 0.061 3.939 10 C -0.201 4.201 11 C -0.035 4.035 12 C -0.191 4.191 13 C 0.270 3.730 14 N -0.596 5.596 15 C 0.090 3.910 16 C 0.242 3.758 17 C -0.536 4.536 18 H 0.061 0.939 19 C 0.064 3.936 20 N -0.892 5.892 21 Si 0.897 3.103 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.281 1.281 25 C -0.230 4.230 26 C -0.025 4.025 27 N -0.471 5.471 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.177 0.823 32 H 0.140 0.860 33 H 0.118 0.882 34 H 0.139 0.861 35 H 0.044 0.956 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.035 0.965 39 H 0.040 0.960 40 H 0.265 0.735 41 H 0.123 0.877 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.134 23.926 -4.107 24.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.057 4.057 3 C -0.402 4.402 4 S 0.344 5.656 5 C -0.129 4.129 6 C -0.063 4.063 7 C -0.046 4.046 8 N -0.087 5.087 9 C 0.034 3.966 10 C -0.204 4.204 11 C -0.055 4.055 12 C -0.214 4.214 13 C 0.158 3.842 14 N -0.296 5.296 15 C -0.054 4.054 16 C 0.123 3.877 17 C -0.575 4.575 18 H 0.079 0.921 19 C -0.139 4.139 20 N -0.531 5.531 21 Si 0.724 3.276 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.207 1.207 25 C -0.253 4.253 26 C -0.044 4.044 27 N -0.185 5.185 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.195 0.805 32 H 0.157 0.843 33 H 0.136 0.864 34 H 0.156 0.844 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.140 0.860 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.917 22.020 -3.923 22.707 hybrid contribution -1.219 -0.312 -0.552 1.374 sum -5.136 21.708 -4.475 22.752 Atomic orbital electron populations 1.20415 0.87262 1.03381 1.03057 1.20185 0.98400 0.86329 1.00803 1.26674 0.94735 1.03627 1.15166 1.84784 1.07426 1.02972 1.70379 1.25375 0.91805 0.94179 1.01559 1.15412 0.90402 0.83596 1.16858 1.24870 0.93406 0.92058 0.94228 1.81302 1.07563 1.11233 1.08597 1.22520 0.90020 0.98713 0.85329 1.18322 0.95525 0.96385 1.10175 1.21169 0.98047 0.91287 0.95033 1.20741 0.93209 1.00976 1.06450 1.18275 0.89336 0.86920 0.89697 1.47328 1.12306 1.17331 1.52667 1.21632 0.84176 1.02578 0.96984 1.19464 0.96667 0.80514 0.91067 1.21519 1.40037 1.00394 0.95513 0.92096 1.24948 0.95542 0.98190 0.95204 1.69924 1.46676 1.24300 1.12169 0.86443 0.79211 0.80917 0.80983 1.19645 1.20845 1.20657 1.20445 1.01560 0.95400 1.07912 1.20746 0.91183 0.97224 0.95256 1.66553 1.04139 1.30713 1.17131 0.90561 0.90727 0.90498 0.80530 0.84292 0.86387 0.84376 0.93805 0.90876 0.92157 0.94658 0.94237 0.92521 0.85954 0.86067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.28 36.01 0.37 -0.27 16 2 C 0.08 0.81 6.69 -84.40 -0.56 0.25 16 3 C -0.26 -2.26 11.08 29.14 0.32 -1.94 16 4 S 0.09 0.76 22.34 -107.50 -2.40 -1.64 16 5 C 0.15 1.80 7.34 -14.40 -0.11 1.70 16 6 C -0.05 -0.72 5.81 -104.85 -0.61 -1.33 16 7 C 0.27 4.54 11.43 -22.47 -0.26 4.28 16 8 N -0.41 -8.02 17.91 41.84 0.75 -7.27 16 9 C 0.06 0.68 9.42 -36.85 -0.35 0.34 16 10 C -0.20 -2.82 5.57 -105.08 -0.59 -3.40 16 11 C -0.04 -0.61 8.26 -39.28 -0.32 -0.93 16 12 C -0.19 -3.76 9.16 -39.62 -0.36 -4.12 16 13 C 0.27 5.03 6.56 -83.77 -0.55 4.48 16 14 N -0.60 -11.82 2.98 -180.94 -0.54 -12.36 16 15 C 0.09 1.41 10.18 59.85 0.61 2.02 16 16 C 0.24 5.81 4.90 -5.19 -0.03 5.79 16 17 C -0.54 -14.34 9.39 -34.44 -0.32 -14.66 16 18 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -25.34 13.29 55.43 0.74 -24.60 16 21 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 25 C -0.23 -3.45 9.16 -39.62 -0.36 -3.81 16 26 C -0.02 -0.32 9.77 -39.28 -0.38 -0.70 16 27 N -0.47 -6.45 10.30 -7.63 -0.08 -6.53 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.41 8.11 -51.93 -0.42 -0.02 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.18 0.98 8.06 -52.48 -0.42 0.56 16 32 H 0.14 1.03 7.23 -52.49 -0.38 0.66 16 33 H 0.12 2.06 5.39 -52.49 -0.28 1.78 16 34 H 0.14 3.07 6.11 -52.49 -0.32 2.75 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 37 H 0.06 0.81 6.17 -51.93 -0.32 0.49 16 38 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 39 H 0.04 1.01 6.17 -51.93 -0.32 0.69 16 40 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.12 1.57 6.11 -52.49 -0.32 1.25 16 42 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 376.19 15.07 5.67 5.67 Total: -1.00 -31.60 376.19 -9.34 -40.94 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -4.86 Total: -0.07 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -3.60 Total: -10.66 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: 0.87 Total: -50.76 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.40 Total: -1.64 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.60 -9.34 -40.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008207364.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.799 kcal (2) G-P(sol) polarization free energy of solvation -31.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.37 seconds