Wall clock time and date at job start Tue Mar 31 2020 07:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46767 * 2 1 4 4 H 1.08991 * 109.47069 * 304.99724 * 3 2 1 5 5 O 1.42897 * 109.47252 * 64.99853 * 3 2 1 6 6 C 1.35896 * 117.00223 * 266.68763 * 5 3 2 7 7 C 1.38737 * 120.05452 * 356.15226 * 6 5 3 8 8 C 1.38144 * 119.94633 * 179.97438 * 7 6 5 9 9 C 1.38266 * 120.05481 * 0.27153 * 8 7 6 10 10 C 1.50704 * 119.94494 * 179.72275 * 9 8 7 11 11 C 1.38266 * 120.10919 * 359.45088 * 9 8 7 12 12 C 1.38143 * 120.05644 * 0.55400 * 11 9 8 13 13 C 1.50696 * 109.46558 * 184.99594 * 3 2 1 14 14 O 1.21287 * 120.00110 * 244.99768 * 13 3 2 15 15 N 1.34783 * 120.00201 * 65.00363 * 13 3 2 16 16 C 1.39236 * 120.00085 * 185.24457 * 15 13 3 17 17 C 1.39476 * 119.83389 * 212.41550 * 16 15 13 18 18 C 1.36373 * 120.16983 * 179.71855 * 17 16 15 19 19 C 1.40874 * 119.82942 * 0.57910 * 18 17 16 20 20 C 1.41145 * 120.17036 * 179.67451 * 19 18 17 21 21 H 1.07998 * 120.00482 * 207.45128 * 20 19 18 22 22 C 1.39912 * 119.99548 * 27.44591 * 20 19 18 23 23 N 1.30869 * 120.00258 * 12.24477 * 22 20 19 24 24 Si 1.86797 * 119.99853 * 192.24575 * 22 20 19 25 25 H 1.48505 * 109.47306 * 59.99702 * 24 22 20 26 26 H 1.48502 * 109.47396 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47167 * 300.00261 * 24 22 20 28 28 C 1.40878 * 119.66763 * 359.69879 * 19 18 17 29 29 C 1.36377 * 119.82654 * 0.02562 * 28 19 18 30 30 H 1.08996 * 109.47327 * 300.00068 * 1 2 3 31 31 H 1.09002 * 109.47008 * 60.00571 * 1 2 3 32 32 H 1.09009 * 109.46872 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47066 * 239.99449 * 2 1 3 34 34 H 1.09007 * 109.46678 * 119.99783 * 2 1 3 35 35 H 1.08001 * 120.02567 * 0.02562 * 7 6 5 36 36 H 1.07996 * 119.97108 * 180.02562 * 8 7 6 37 37 H 1.09001 * 109.46553 * 90.00058 * 10 9 8 38 38 H 1.08994 * 109.46889 * 210.00304 * 10 9 8 39 39 H 1.08999 * 109.46614 * 330.00502 * 10 9 8 40 40 H 1.08003 * 119.97168 * 180.24978 * 11 9 8 41 41 H 1.08004 * 120.02703 * 179.74873 * 12 11 9 42 42 H 0.97003 * 119.99586 * 5.24320 * 15 13 3 43 43 H 1.08006 * 119.91526 * 0.02562 * 17 16 15 44 44 H 1.07994 * 120.08966 * 180.25679 * 18 17 16 45 45 H 0.97001 * 120.00102 * 179.97438 * 23 22 20 46 46 H 1.07996 * 120.08413 * 179.97438 * 28 19 18 47 47 H 1.07998 * 119.90747 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6619 2.0814 1.2210 6 6 0.4970 2.7813 1.2162 7 6 -0.2262 2.9187 0.0402 8 6 -1.4103 3.6302 0.0380 9 6 -1.8721 4.2099 1.2052 10 6 -3.1610 4.9908 1.1986 11 6 -1.1561 4.0696 2.3797 12 6 0.0286 3.3592 2.3872 13 6 3.5418 1.4443 -0.1237 14 8 4.2249 1.8611 0.7877 15 7 4.1260 0.9827 -1.2473 16 6 5.5129 0.8822 -1.3200 17 6 6.1595 1.0756 -2.5406 18 6 7.5179 0.9844 -2.6185 19 6 8.2673 0.6818 -1.4646 20 6 9.6730 0.5789 -1.5385 21 1 10.2056 -0.0522 -0.8425 22 6 10.3765 1.2944 -2.5135 23 7 9.7748 2.2346 -3.1967 24 14 12.1745 0.9076 -2.8403 25 1 12.3064 -0.5081 -3.2691 26 1 12.6857 1.7988 -3.9126 27 1 12.9609 1.1240 -1.5993 28 6 7.6065 0.4820 -0.2366 29 6 6.2479 0.5821 -0.1732 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0278 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 0.1359 2.4690 -0.8726 36 1 -1.9738 3.7370 -0.8771 37 1 -3.9927 4.3209 1.4171 38 1 -3.1157 5.7730 1.9562 39 1 -3.3067 5.4430 0.2176 40 1 -1.5209 4.5199 3.2911 41 1 0.5896 3.2533 3.3040 42 1 3.5803 0.7207 -2.0052 43 1 5.5833 1.3032 -3.4253 44 1 8.0176 1.1385 -3.5634 45 1 10.2627 2.7309 -3.8724 46 1 8.1743 0.2493 0.6521 47 1 5.7400 0.4296 0.7676 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008500117.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:19 Heat of formation + Delta-G solvation = -29.575215 kcal Electronic energy + Delta-G solvation = -28152.916174 eV Core-core repulsion = 24265.573174 eV Total energy + Delta-G solvation = -3887.343000 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 13.94 seconds Orbital eigenvalues (eV) -40.87272 -39.52559 -37.99506 -37.02080 -34.55865 -33.97285 -32.86120 -32.12258 -31.13255 -29.64297 -29.23186 -27.88960 -26.26274 -24.78098 -23.48427 -22.30814 -21.83415 -21.22480 -20.60491 -19.55784 -18.61606 -17.52625 -17.26297 -16.18830 -15.97850 -15.79331 -15.44154 -15.20785 -14.70440 -14.58424 -14.05966 -13.96863 -13.95670 -13.75250 -13.66139 -13.10905 -13.02490 -12.74060 -12.52306 -12.25350 -12.17027 -12.12036 -11.95141 -11.82355 -11.75046 -11.39739 -11.34774 -11.13600 -11.06466 -10.99359 -10.75586 -10.58795 -10.00366 -9.59599 -9.41872 -9.18020 -9.14560 -8.93433 -8.14259 -7.57595 -6.97892 -6.73166 -4.33566 1.14886 1.24183 2.45651 2.75568 2.96495 3.05430 3.07455 3.09155 3.32066 3.54841 3.81241 3.92527 4.43032 4.57261 4.57772 4.64867 4.66874 4.78756 4.84438 4.97630 5.04859 5.14759 5.22521 5.33037 5.36516 5.43428 5.53397 5.64683 5.67074 5.69380 5.81388 5.86420 5.98879 6.12216 6.15758 6.18497 6.39565 6.41013 6.58890 6.71388 6.86987 7.02008 7.15057 7.23520 7.29503 7.57164 7.67902 7.84622 8.00857 8.21684 8.25984 8.56469 8.67754 8.86765 8.96082 10.18961 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.026051 B = 0.002006 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.552488 B =13956.226636 C =14144.417568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.139 4.139 3 C 0.067 3.933 4 H 0.098 0.902 5 O -0.280 6.280 6 C 0.133 3.867 7 C -0.209 4.209 8 C -0.079 4.079 9 C -0.132 4.132 10 C -0.108 4.108 11 C -0.080 4.080 12 C -0.149 4.149 13 C 0.498 3.502 14 O -0.507 6.507 15 N -0.644 5.644 16 C -0.005 4.005 17 C -0.114 4.114 18 C -0.149 4.149 19 C 0.105 3.895 20 C -0.456 4.456 21 H 0.078 0.922 22 C 0.072 3.928 23 N -0.798 5.798 24 Si 0.912 3.088 25 H -0.264 1.264 26 H -0.279 1.279 27 H -0.265 1.265 28 C -0.212 4.212 29 C -0.078 4.078 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.132 0.868 36 H 0.123 0.877 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.127 0.873 41 H 0.131 0.869 42 H 0.395 0.605 43 H 0.091 0.909 44 H 0.125 0.875 45 H 0.281 0.719 46 H 0.096 0.904 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.681 0.438 2.333 22.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.177 4.177 3 C 0.007 3.993 4 H 0.116 0.884 5 O -0.192 6.192 6 C 0.087 3.913 7 C -0.227 4.227 8 C -0.097 4.097 9 C -0.132 4.132 10 C -0.164 4.164 11 C -0.098 4.098 12 C -0.167 4.167 13 C 0.282 3.718 14 O -0.381 6.381 15 N -0.289 5.289 16 C -0.097 4.097 17 C -0.134 4.134 18 C -0.169 4.169 19 C 0.102 3.898 20 C -0.486 4.486 21 H 0.096 0.904 22 C -0.145 4.145 23 N -0.424 5.424 24 Si 0.737 3.263 25 H -0.189 1.189 26 H -0.204 1.204 27 H -0.190 1.190 28 C -0.232 4.232 29 C -0.098 4.098 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.149 0.851 36 H 0.141 0.859 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.145 0.855 41 H 0.149 0.851 42 H 0.228 0.772 43 H 0.109 0.891 44 H 0.142 0.858 45 H 0.092 0.908 46 H 0.114 0.886 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -22.007 0.891 2.999 22.228 hybrid contribution 0.527 -0.127 -0.830 0.991 sum -21.481 0.764 2.169 21.603 Atomic orbital electron populations 1.21950 0.94585 1.02390 1.02341 1.22006 0.97095 0.94166 1.04437 1.22370 0.93941 0.94972 0.88012 0.88421 1.86238 1.36034 1.63133 1.33787 1.19084 0.85801 0.92126 0.94266 1.21316 0.98021 1.05709 0.97689 1.20780 0.95175 0.96060 0.97720 1.19807 0.98248 1.01563 0.93605 1.20700 0.94226 0.98998 1.02521 1.20827 0.93683 0.97569 0.97728 1.20449 0.97728 1.01605 0.96952 1.20062 0.88537 0.79221 0.83958 1.90741 1.64194 1.44282 1.38888 1.42849 1.06751 1.63568 1.15701 1.17138 0.80187 1.16513 0.95886 1.20215 0.95267 1.03367 0.94582 1.20957 0.91296 1.05255 0.99382 1.17690 0.93425 0.88400 0.90291 1.19536 0.91952 1.23900 1.13210 0.90418 1.25929 1.00955 0.93284 0.94356 1.69805 1.38502 1.15526 1.18550 0.86300 0.81741 0.79416 0.78851 1.18862 1.20355 1.19001 1.20692 0.93265 1.12270 0.97005 1.20274 0.94159 0.99254 0.96141 0.92050 0.92319 0.91979 0.89610 0.89970 0.85094 0.85933 0.91581 0.91754 0.91809 0.85506 0.85057 0.77170 0.89104 0.85766 0.90833 0.88599 0.87920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 8.45 37.16 0.31 -1.03 16 2 C -0.14 -1.46 5.61 -26.73 -0.15 -1.61 16 3 C 0.07 0.89 2.58 -27.88 -0.07 0.81 16 4 H 0.10 1.05 5.36 -51.93 -0.28 0.77 16 5 O -0.28 -4.23 9.21 -39.27 -0.36 -4.59 16 6 C 0.13 1.69 5.26 -39.22 -0.21 1.48 16 7 C -0.21 -2.19 7.14 -39.43 -0.28 -2.48 16 8 C -0.08 -0.73 9.69 -39.61 -0.38 -1.11 16 9 C -0.13 -1.19 5.88 -104.60 -0.62 -1.80 16 10 C -0.11 -0.68 10.01 36.01 0.36 -0.32 16 11 C -0.08 -0.77 9.69 -39.61 -0.38 -1.15 16 12 C -0.15 -1.73 9.99 -39.43 -0.39 -2.12 16 13 C 0.50 8.91 6.91 -10.98 -0.08 8.83 16 14 O -0.51 -11.62 14.12 -14.31 -0.20 -11.83 16 15 N -0.64 -11.11 5.20 -9.74 -0.05 -11.17 16 16 C -0.01 -0.12 6.30 -83.57 -0.53 -0.64 16 17 C -0.11 -2.58 9.89 -39.79 -0.39 -2.97 16 18 C -0.15 -3.80 8.61 -39.26 -0.34 -4.14 16 19 C 0.10 2.80 5.56 -106.80 -0.59 2.21 16 20 C -0.46 -12.09 9.05 -37.85 -0.34 -12.43 16 21 H 0.08 1.97 7.87 -52.49 -0.41 1.56 16 22 C 0.07 1.80 5.23 -17.34 -0.09 1.71 16 23 N -0.80 -20.57 10.82 55.55 0.60 -19.97 16 24 Si 0.91 18.64 29.58 -169.99 -5.03 13.61 16 25 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 26 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 27 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 28 C -0.21 -5.42 9.74 -39.25 -0.38 -5.80 16 29 C -0.08 -1.89 8.58 -39.79 -0.34 -2.24 16 30 H 0.06 0.61 6.23 -51.93 -0.32 0.28 16 31 H 0.06 0.43 6.84 -51.93 -0.36 0.08 16 32 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 33 H 0.09 0.77 7.93 -51.93 -0.41 0.36 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.13 1.18 4.62 -52.49 -0.24 0.94 16 36 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 39 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 40 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 41 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 42 H 0.39 5.12 8.69 -40.82 -0.35 4.76 16 43 H 0.09 1.77 8.06 -52.48 -0.42 1.34 16 44 H 0.12 3.24 6.16 -52.49 -0.32 2.92 16 45 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 46 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 47 H 0.10 2.46 6.34 -52.49 -0.33 2.13 16 LS Contribution 383.67 15.07 5.78 5.78 Total: -1.00 -31.76 383.67 -10.55 -42.31 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -6.39 Total: 10.65 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: -4.90 Total: -24.80 kcal Atomic # 7 Polarization: -31.69 SS G_CDS: 0.55 Total: -31.14 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.56 Total: -16.41 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.76 -10.55 -42.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008500117.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.734 kcal (2) G-P(sol) polarization free energy of solvation -31.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.95 seconds