Wall clock time and date at job start Tue Mar 31 2020 07:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46767 * 2 1 4 4 H 1.08991 * 109.47069 * 304.99724 * 3 2 1 5 5 O 1.42897 * 109.47252 * 64.99853 * 3 2 1 6 6 C 1.35896 * 117.00223 * 266.68763 * 5 3 2 7 7 C 1.38737 * 120.05452 * 356.15226 * 6 5 3 8 8 C 1.38144 * 119.94633 * 179.97438 * 7 6 5 9 9 C 1.38266 * 120.05481 * 0.27153 * 8 7 6 10 10 C 1.50704 * 119.94494 * 179.72275 * 9 8 7 11 11 C 1.38266 * 120.10919 * 359.45088 * 9 8 7 12 12 C 1.38143 * 120.05644 * 0.55400 * 11 9 8 13 13 C 1.50696 * 109.46558 * 184.99594 * 3 2 1 14 14 O 1.21287 * 120.00110 * 244.99768 * 13 3 2 15 15 N 1.34783 * 120.00201 * 65.00363 * 13 3 2 16 16 C 1.39236 * 120.00085 * 185.24457 * 15 13 3 17 17 C 1.39476 * 119.83389 * 212.41550 * 16 15 13 18 18 C 1.36373 * 120.16983 * 179.71855 * 17 16 15 19 19 C 1.40874 * 119.82942 * 0.57910 * 18 17 16 20 20 C 1.41145 * 120.17036 * 179.67451 * 19 18 17 21 21 H 1.07998 * 120.00482 * 207.45128 * 20 19 18 22 22 C 1.39912 * 119.99548 * 27.44591 * 20 19 18 23 23 N 1.30869 * 120.00258 * 12.24477 * 22 20 19 24 24 Si 1.86797 * 119.99853 * 192.24575 * 22 20 19 25 25 H 1.48505 * 109.47306 * 59.99702 * 24 22 20 26 26 H 1.48502 * 109.47396 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47167 * 300.00261 * 24 22 20 28 28 C 1.40878 * 119.66763 * 359.69879 * 19 18 17 29 29 C 1.36377 * 119.82654 * 0.02562 * 28 19 18 30 30 H 1.08996 * 109.47327 * 300.00068 * 1 2 3 31 31 H 1.09002 * 109.47008 * 60.00571 * 1 2 3 32 32 H 1.09009 * 109.46872 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47066 * 239.99449 * 2 1 3 34 34 H 1.09007 * 109.46678 * 119.99783 * 2 1 3 35 35 H 1.08001 * 120.02567 * 0.02562 * 7 6 5 36 36 H 1.07996 * 119.97108 * 180.02562 * 8 7 6 37 37 H 1.09001 * 109.46553 * 90.00058 * 10 9 8 38 38 H 1.08994 * 109.46889 * 210.00304 * 10 9 8 39 39 H 1.08999 * 109.46614 * 330.00502 * 10 9 8 40 40 H 1.08003 * 119.97168 * 180.24978 * 11 9 8 41 41 H 1.08004 * 120.02703 * 179.74873 * 12 11 9 42 42 H 0.97003 * 119.99586 * 5.24320 * 15 13 3 43 43 H 1.08006 * 119.91526 * 0.02562 * 17 16 15 44 44 H 1.07994 * 120.08966 * 180.25679 * 18 17 16 45 45 H 0.97001 * 120.00102 * 179.97438 * 23 22 20 46 46 H 1.07996 * 120.08413 * 179.97438 * 28 19 18 47 47 H 1.07998 * 119.90747 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6619 2.0814 1.2210 6 6 0.4970 2.7813 1.2162 7 6 -0.2262 2.9187 0.0402 8 6 -1.4103 3.6302 0.0380 9 6 -1.8721 4.2099 1.2052 10 6 -3.1610 4.9908 1.1986 11 6 -1.1561 4.0696 2.3797 12 6 0.0286 3.3592 2.3872 13 6 3.5418 1.4443 -0.1237 14 8 4.2249 1.8611 0.7877 15 7 4.1260 0.9827 -1.2473 16 6 5.5129 0.8822 -1.3200 17 6 6.1595 1.0756 -2.5406 18 6 7.5179 0.9844 -2.6185 19 6 8.2673 0.6818 -1.4646 20 6 9.6730 0.5789 -1.5385 21 1 10.2056 -0.0522 -0.8425 22 6 10.3765 1.2944 -2.5135 23 7 9.7748 2.2346 -3.1967 24 14 12.1745 0.9076 -2.8403 25 1 12.3064 -0.5081 -3.2691 26 1 12.6857 1.7988 -3.9126 27 1 12.9609 1.1240 -1.5993 28 6 7.6065 0.4820 -0.2366 29 6 6.2479 0.5821 -0.1732 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0278 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 0.1359 2.4690 -0.8726 36 1 -1.9738 3.7370 -0.8771 37 1 -3.9927 4.3209 1.4171 38 1 -3.1157 5.7730 1.9562 39 1 -3.3067 5.4430 0.2176 40 1 -1.5209 4.5199 3.2911 41 1 0.5896 3.2533 3.3040 42 1 3.5803 0.7207 -2.0052 43 1 5.5833 1.3032 -3.4253 44 1 8.0176 1.1385 -3.5634 45 1 10.2627 2.7309 -3.8724 46 1 8.1743 0.2493 0.6521 47 1 5.7400 0.4296 0.7676 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008500117.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:12 Heat of formation + Delta-G solvation = -45.791637 kcal Electronic energy + Delta-G solvation = -28153.619371 eV Core-core repulsion = 24265.573174 eV Total energy + Delta-G solvation = -3888.046197 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 6.97 seconds Orbital eigenvalues (eV) -41.96703 -40.84632 -39.27715 -38.46641 -36.25968 -35.16793 -34.39840 -32.83317 -31.89020 -31.51945 -30.97968 -29.02961 -27.15578 -26.38897 -24.26673 -23.69151 -23.06639 -22.67761 -21.95639 -20.95472 -19.56011 -19.30818 -18.78065 -17.78159 -17.03493 -16.94492 -16.76141 -16.24674 -16.08065 -15.68624 -15.56025 -15.20729 -14.88569 -14.72006 -14.49948 -14.41511 -14.37186 -14.02280 -13.84945 -13.69236 -13.34342 -13.27566 -13.06971 -12.91337 -12.83087 -12.78011 -12.71229 -12.48400 -12.42766 -12.08609 -11.84918 -11.74293 -11.45167 -11.40281 -11.22238 -10.85401 -10.61740 -9.93641 -9.50493 -8.96080 -8.85574 -8.59697 -6.31381 0.39425 0.45750 0.72906 1.10606 1.38525 1.41614 1.51043 1.61650 1.70944 2.21692 2.59591 2.74823 2.80276 3.48121 3.57536 3.66545 3.73878 3.89506 3.99827 4.12592 4.19205 4.34829 4.37679 4.42016 4.46761 4.47561 4.63805 4.72015 4.84927 4.89351 4.92137 4.98751 5.05597 5.07748 5.11036 5.12189 5.20614 5.27743 5.30082 5.38755 5.39858 5.40741 5.63438 5.70608 5.83046 5.87954 5.99009 6.06981 6.34071 6.39467 6.62072 6.65090 6.91450 6.95497 7.27761 8.34147 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.026051 B = 0.002006 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.552488 B =13956.226636 C =14144.417568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.134 4.134 3 C 0.078 3.922 4 H 0.129 0.871 5 O -0.313 6.313 6 C 0.104 3.896 7 C -0.209 4.209 8 C -0.081 4.081 9 C -0.132 4.132 10 C -0.107 4.107 11 C -0.084 4.084 12 C -0.170 4.170 13 C 0.496 3.504 14 O -0.563 6.563 15 N -0.631 5.631 16 C 0.011 3.989 17 C -0.110 4.110 18 C -0.166 4.166 19 C 0.073 3.927 20 C -0.494 4.494 21 H 0.074 0.926 22 C 0.032 3.968 23 N -0.828 5.828 24 Si 0.987 3.013 25 H -0.258 1.258 26 H -0.266 1.266 27 H -0.264 1.264 28 C -0.231 4.231 29 C -0.092 4.092 30 H 0.045 0.955 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.062 0.938 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.147 0.853 41 H 0.122 0.878 42 H 0.420 0.580 43 H 0.129 0.871 44 H 0.115 0.885 45 H 0.289 0.711 46 H 0.093 0.907 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.407 0.762 0.361 25.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.172 4.172 3 C 0.018 3.982 4 H 0.146 0.854 5 O -0.226 6.226 6 C 0.060 3.940 7 C -0.227 4.227 8 C -0.099 4.099 9 C -0.132 4.132 10 C -0.163 4.163 11 C -0.102 4.102 12 C -0.189 4.189 13 C 0.283 3.717 14 O -0.441 6.441 15 N -0.278 5.278 16 C -0.083 4.083 17 C -0.130 4.130 18 C -0.186 4.186 19 C 0.071 3.929 20 C -0.524 4.524 21 H 0.092 0.908 22 C -0.182 4.182 23 N -0.455 5.455 24 Si 0.807 3.193 25 H -0.182 1.182 26 H -0.190 1.190 27 H -0.189 1.189 28 C -0.251 4.251 29 C -0.112 4.112 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.125 0.875 34 H 0.080 0.920 35 H 0.165 0.835 36 H 0.168 0.832 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.164 0.836 41 H 0.140 0.860 42 H 0.259 0.741 43 H 0.147 0.853 44 H 0.133 0.867 45 H 0.100 0.900 46 H 0.111 0.889 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -24.799 1.204 1.003 24.848 hybrid contribution 1.152 -0.159 -0.132 1.171 sum -23.647 1.045 0.870 23.686 Atomic orbital electron populations 1.21905 0.92699 1.03392 1.02557 1.22028 0.98602 0.92081 1.04501 1.22377 0.89948 0.97052 0.88827 0.85375 1.86187 1.37627 1.64108 1.34720 1.19323 0.85782 0.93307 0.95608 1.21489 0.98209 1.05730 0.97258 1.21154 0.94754 0.95126 0.98894 1.20219 0.98934 1.00857 0.93203 1.20759 0.92958 0.99097 1.03522 1.21097 0.92919 0.97059 0.99113 1.20620 0.98839 1.02715 0.96743 1.21014 0.90686 0.77300 0.82699 1.90720 1.66040 1.46608 1.40759 1.42705 1.05017 1.63254 1.16825 1.17186 0.82468 1.13726 0.94895 1.20498 0.94539 1.01899 0.96035 1.20985 0.92624 1.06392 0.98618 1.18018 0.94219 0.89603 0.91085 1.19768 0.92390 1.25383 1.14848 0.90776 1.26772 1.05515 0.92479 0.93473 1.69850 1.40482 1.16103 1.19023 0.85183 0.75721 0.79521 0.78841 1.18178 1.19010 1.18858 1.20805 0.94110 1.13323 0.96911 1.20371 0.93921 0.99899 0.96970 0.93580 0.90304 0.90584 0.87504 0.91962 0.83537 0.83183 0.90424 0.91052 0.90687 0.83571 0.86039 0.74143 0.85286 0.86688 0.90041 0.88905 0.88338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 8.45 71.98 0.61 -1.56 16 2 C -0.13 -2.57 5.61 30.60 0.17 -2.40 16 3 C 0.08 1.94 2.58 29.85 0.08 2.02 16 4 H 0.13 2.38 5.36 -2.39 -0.01 2.36 16 5 O -0.31 -9.55 9.21 -73.39 -0.68 -10.23 16 6 C 0.10 2.61 5.26 22.51 0.12 2.72 16 7 C -0.21 -3.89 7.14 22.37 0.16 -3.73 16 8 C -0.08 -1.24 9.69 22.25 0.22 -1.02 16 9 C -0.13 -2.03 5.88 -19.85 -0.12 -2.15 16 10 C -0.11 -1.00 10.01 71.24 0.71 -0.28 16 11 C -0.08 -1.50 9.69 22.25 0.22 -1.29 16 12 C -0.17 -4.01 9.99 22.36 0.22 -3.78 16 13 C 0.50 17.55 6.91 87.65 0.61 18.15 16 14 O -0.56 -26.63 14.12 15.94 0.23 -26.40 16 15 N -0.63 -20.79 5.20 -303.11 -1.57 -22.37 16 16 C 0.01 0.46 6.30 38.56 0.24 0.70 16 17 C -0.11 -4.86 9.89 22.13 0.22 -4.64 16 18 C -0.17 -8.63 8.61 22.48 0.19 -8.44 16 19 C 0.07 4.09 5.56 -21.27 -0.12 3.97 16 20 C -0.49 -27.25 9.05 23.39 0.21 -27.04 16 21 H 0.07 3.96 7.87 -2.91 -0.02 3.93 16 22 C 0.03 1.61 5.23 85.24 0.45 2.06 16 23 N -0.83 -43.39 10.82 21.82 0.24 -43.15 16 24 Si 0.99 38.51 29.58 68.60 2.03 40.54 16 25 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 26 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 27 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 28 C -0.23 -12.40 9.74 22.48 0.22 -12.18 16 29 C -0.09 -4.57 8.58 22.13 0.19 -4.38 16 30 H 0.05 0.84 6.23 -2.39 -0.01 0.82 16 31 H 0.08 0.84 6.84 -2.39 -0.02 0.82 16 32 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.11 1.57 7.93 -2.39 -0.02 1.56 16 34 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.15 2.11 4.62 -2.91 -0.01 2.10 16 36 H 0.15 1.43 8.06 -2.91 -0.02 1.40 16 37 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.07 0.58 8.09 -2.39 -0.02 0.56 16 39 H 0.07 0.56 8.08 -2.39 -0.02 0.54 16 40 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 41 H 0.12 2.92 8.06 -2.91 -0.02 2.90 16 42 H 0.42 9.53 8.69 -92.71 -0.81 8.73 16 43 H 0.13 4.66 8.06 -2.91 -0.02 4.63 16 44 H 0.12 6.13 6.16 -2.91 -0.02 6.11 16 45 H 0.29 13.65 8.30 -92.71 -0.77 12.88 16 46 H 0.09 4.83 8.06 -2.91 -0.02 4.80 16 47 H 0.10 4.95 6.34 -2.91 -0.02 4.93 16 Total: -1.00 -73.54 383.67 5.03 -68.51 By element: Atomic # 1 Polarization: 36.17 SS G_CDS: 0.20 Total: 36.37 kcal Atomic # 6 Polarization: -47.87 SS G_CDS: 4.60 Total: -43.27 kcal Atomic # 7 Polarization: -64.18 SS G_CDS: -1.34 Total: -65.52 kcal Atomic # 8 Polarization: -36.18 SS G_CDS: -0.45 Total: -36.63 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.03 Total: 40.54 kcal Total: -73.54 5.03 -68.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008500117.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.718 kcal (2) G-P(sol) polarization free energy of solvation -73.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.97 seconds