Wall clock time and date at job start Tue Mar 31 2020 05:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47592 * 2 1 4 4 C 1.53006 * 109.46626 * 120.00035 * 2 1 3 5 5 N 1.46496 * 109.47070 * 64.99833 * 4 2 1 6 6 C 1.36669 * 119.78855 * 269.72630 * 5 4 2 7 7 S 1.76204 * 118.45961 * 359.97438 * 6 5 4 8 8 C 1.76209 * 100.00000 * 180.02562 * 7 6 5 9 9 H 1.08005 * 119.99699 * 359.97438 * 8 7 6 10 10 C 1.38791 * 120.00042 * 180.02562 * 8 7 6 11 11 N 1.31533 * 119.99865 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00011 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46862 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47095 * 120.00277 * 12 10 8 15 15 H 1.48499 * 109.47092 * 240.00285 * 12 10 8 16 16 N 1.30952 * 123.07970 * 179.68764 * 6 5 4 17 17 C 1.34792 * 121.64733 * 0.59529 * 16 6 5 18 18 C 1.39838 * 121.52822 * 179.71221 * 17 16 6 19 19 C 1.36592 * 119.81872 * 180.02562 * 18 17 16 20 20 C 1.39025 * 120.96943 * 0.02562 * 19 18 17 21 21 Cl 1.73597 * 119.72116 * 179.97438 * 20 19 18 22 22 C 1.37889 * 120.55337 * 359.96661 * 20 19 18 23 23 C 1.39386 * 119.40391 * 0.03244 * 22 20 19 24 24 C 1.35346 * 119.78779 * 89.99946 * 5 4 2 25 25 O 1.21728 * 121.25998 * 359.97438 * 24 5 4 26 26 H 1.09002 * 109.46719 * 60.00054 * 1 2 3 27 27 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47160 * 300.00333 * 1 2 3 29 29 H 1.09000 * 109.47160 * 239.99666 * 2 1 3 30 30 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46777 * 300.00227 * 3 2 1 32 32 H 1.09000 * 109.47140 * 59.99654 * 3 2 1 33 33 H 1.09004 * 109.46579 * 184.99387 * 4 2 1 34 34 H 1.08992 * 109.47046 * 304.99570 * 4 2 1 35 35 H 0.97003 * 119.99496 * 179.97438 * 11 10 8 36 36 H 1.07996 * 120.09374 * 0.02562 * 18 17 16 37 37 H 1.08004 * 119.51721 * 180.02562 * 19 18 17 38 38 H 1.08001 * 120.29873 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6522 -2.1328 1.1906 6 6 0.4616 -2.5329 1.7293 7 16 -0.5698 -1.3186 2.4819 8 6 -1.9176 -2.3339 2.9895 9 1 -1.9009 -3.3946 2.7865 10 6 -3.0009 -1.7705 3.6491 11 7 -3.0218 -0.4785 3.8950 12 14 -4.4300 -2.8467 4.1866 13 1 -4.1649 -4.2540 3.7937 14 1 -4.5835 -2.7655 5.6614 15 1 -5.6774 -2.3763 3.5324 16 7 0.0489 -3.7755 1.7075 17 6 0.7888 -4.7569 1.1541 18 6 0.3483 -6.0840 1.1375 19 6 1.1267 -7.0510 0.5676 20 6 2.3569 -6.7372 0.0010 21 17 3.3202 -7.9920 -0.7140 22 6 2.8181 -5.4378 0.0019 23 6 2.0393 -4.4356 0.5782 24 6 2.4780 -3.0332 0.6082 25 8 3.5439 -2.6944 0.1277 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 3.1262 -0.6445 1.2952 34 1 1.6053 -0.2618 2.1370 35 1 -3.7791 -0.0847 4.3557 36 1 -0.6048 -6.3437 1.5740 37 1 0.7815 -8.0743 0.5572 38 1 3.7741 -5.1986 -0.4399 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009091547.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:36 Heat of formation + Delta-G solvation = -10.556950 kcal Electronic energy + Delta-G solvation = -24589.509667 eV Core-core repulsion = 20969.363855 eV Total energy + Delta-G solvation = -3620.145812 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 338.060 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.12135 -38.51694 -37.12199 -36.47620 -35.47194 -33.06974 -32.81047 -31.15618 -29.41539 -27.03125 -26.79128 -25.93654 -24.46163 -23.45521 -21.70120 -20.19679 -19.18745 -18.57998 -17.68336 -16.85702 -15.83452 -15.71270 -15.26776 -15.15828 -14.87398 -14.57925 -14.29654 -13.86916 -13.68309 -13.27495 -13.20243 -12.74055 -12.59425 -12.34408 -12.15247 -12.03151 -11.79324 -11.48810 -11.42009 -11.34521 -11.27009 -11.02370 -10.86834 -10.67996 -10.62701 -10.44713 -9.81284 -9.53473 -9.45025 -9.17504 -9.05603 -9.00430 -8.01614 -6.96671 -6.75942 -4.48344 0.77925 1.06242 2.14595 2.32807 2.54500 2.94333 3.00125 3.04232 3.08928 3.17252 3.76693 4.28237 4.53313 4.62763 4.72477 4.87858 4.94448 4.97913 5.05370 5.16274 5.26951 5.48111 5.54766 5.63906 5.68227 5.79191 5.92515 6.02929 6.07602 6.11211 6.14755 6.22936 6.27590 6.40634 6.48633 6.56073 6.71613 6.89684 7.01616 7.32986 8.05582 8.19910 8.45081 8.78507 10.30459 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.010157 B = 0.004702 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.957294 B = 5953.798025 C = 8447.645889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.108 4.108 3 C -0.142 4.142 4 C 0.096 3.904 5 N -0.530 5.530 6 C 0.325 3.675 7 S 0.202 5.798 8 C -0.546 4.546 9 H 0.120 0.880 10 C 0.079 3.921 11 N -0.868 5.868 12 Si 0.933 3.067 13 H -0.262 1.262 14 H -0.276 1.276 15 H -0.276 1.276 16 N -0.542 5.542 17 C 0.212 3.788 18 C -0.124 4.124 19 C -0.057 4.057 20 C -0.095 4.095 21 Cl -0.084 7.084 22 C -0.014 4.014 23 C -0.231 4.231 24 C 0.559 3.441 25 O -0.530 6.530 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.278 0.722 36 H 0.142 0.858 37 H 0.133 0.867 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.220 -2.802 -4.948 8.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.127 4.127 3 C -0.200 4.200 4 C -0.027 4.027 5 N -0.254 5.254 6 C -0.039 4.039 7 S 0.448 5.552 8 C -0.694 4.694 9 H 0.137 0.863 10 C -0.132 4.132 11 N -0.501 5.501 12 Si 0.758 3.242 13 H -0.186 1.186 14 H -0.202 1.202 15 H -0.202 1.202 16 N -0.271 5.271 17 C 0.090 3.910 18 C -0.146 4.146 19 C -0.078 4.078 20 C -0.124 4.124 21 Cl -0.056 7.056 22 C -0.034 4.034 23 C -0.242 4.242 24 C 0.352 3.648 25 O -0.407 6.407 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.088 0.912 36 H 0.160 0.840 37 H 0.151 0.849 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.161 -1.426 -4.655 7.852 hybrid contribution -0.192 -1.879 -0.222 1.902 sum 5.968 -3.305 -4.877 8.386 Atomic orbital electron populations 1.22274 0.93601 1.02939 1.02439 1.21462 0.97311 0.96435 0.97512 1.21747 1.00773 0.95027 1.02408 1.22090 1.02144 0.78246 1.00218 1.46395 1.17646 1.10258 1.51135 1.26306 0.86948 0.97758 0.92862 1.83758 1.12603 1.03463 1.55390 1.23840 1.03198 0.99579 1.42786 0.86257 1.25199 0.98533 0.95668 0.93795 1.69895 1.31827 1.10590 1.37779 0.85856 0.79566 0.80432 0.78390 1.18615 1.20201 1.20176 1.69130 1.32027 0.97059 1.28891 1.18962 0.88537 0.93946 0.89593 1.20471 1.01214 0.90011 1.02871 1.20712 0.91903 1.00009 0.95160 1.20472 0.95269 0.89192 1.07494 1.98326 1.71615 1.52737 1.82877 1.20674 0.98666 0.89700 0.94385 1.20311 0.98947 0.93259 1.11638 1.18220 0.83532 0.85480 0.77603 1.90785 1.21986 1.81160 1.46761 0.92929 0.92210 0.90513 0.91033 0.92642 0.92218 0.91990 0.88621 0.88280 0.91172 0.84047 0.84899 0.84529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 7.52 37.16 0.28 -2.11 16 2 C -0.11 -1.53 3.13 -90.62 -0.28 -1.81 16 3 C -0.14 -1.59 9.19 37.16 0.34 -1.25 16 4 C 0.10 1.48 4.68 -4.04 -0.02 1.46 16 5 N -0.53 -9.80 2.50 -117.38 -0.29 -10.10 16 6 C 0.32 6.60 6.48 -88.49 -0.57 6.03 16 7 S 0.20 4.26 15.58 -107.50 -1.67 2.59 16 8 C -0.55 -13.29 9.23 30.94 0.29 -13.00 16 9 H 0.12 2.98 6.48 -52.48 -0.34 2.64 16 10 C 0.08 1.90 5.49 -17.48 -0.10 1.81 16 11 N -0.87 -21.51 13.22 55.49 0.73 -20.78 16 12 Si 0.93 19.05 29.55 -169.99 -5.02 14.02 16 13 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 14 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 15 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 16 N -0.54 -11.48 8.28 -10.89 -0.09 -11.57 16 17 C 0.21 4.06 6.61 -84.77 -0.56 3.50 16 18 C -0.12 -2.00 9.98 -39.58 -0.40 -2.40 16 19 C -0.06 -0.80 9.73 -39.88 -0.39 -1.19 16 20 C -0.10 -1.40 6.32 -39.42 -0.25 -1.65 16 21 Cl -0.08 -1.08 28.94 -51.86 -1.50 -2.58 16 22 C -0.01 -0.23 9.45 -39.28 -0.37 -0.60 16 23 C -0.23 -4.31 5.90 -104.74 -0.62 -4.93 16 24 C 0.56 10.82 7.66 -12.47 -0.10 10.72 16 25 O -0.53 -10.69 16.32 5.16 0.08 -10.61 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 1.07 5.83 -51.93 -0.30 0.76 16 28 H 0.08 1.23 6.62 -51.93 -0.34 0.88 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.10 1.41 7.47 -51.93 -0.39 1.02 16 34 H 0.10 1.48 6.47 -51.93 -0.34 1.14 16 35 H 0.28 6.45 8.31 -40.82 -0.34 6.11 16 36 H 0.14 2.13 8.06 -52.49 -0.42 1.70 16 37 H 0.13 1.48 8.06 -52.48 -0.42 1.05 16 38 H 0.14 2.15 7.82 -52.49 -0.41 1.74 16 LS Contribution 342.88 15.07 5.17 5.17 Total: -1.00 -26.41 342.88 -9.55 -35.96 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -4.22 Total: 3.32 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -2.74 Total: -5.42 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 0.35 Total: -42.45 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.08 Total: -10.61 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.02 kcal Atomic # 16 Polarization: 4.26 SS G_CDS: -1.67 Total: 2.59 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -1.50 Total: -2.58 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -26.41 -9.55 -35.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009091547.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.404 kcal (2) G-P(sol) polarization free energy of solvation -26.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds