Wall clock time and date at job start Tue Mar 31 2020 05:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47592 * 2 1 4 4 C 1.53006 * 109.46626 * 120.00035 * 2 1 3 5 5 N 1.46496 * 109.47070 * 64.99833 * 4 2 1 6 6 C 1.36669 * 119.78855 * 269.72630 * 5 4 2 7 7 S 1.76204 * 118.45961 * 359.97438 * 6 5 4 8 8 C 1.76209 * 100.00000 * 180.02562 * 7 6 5 9 9 H 1.08005 * 119.99699 * 359.97438 * 8 7 6 10 10 C 1.38791 * 120.00042 * 180.02562 * 8 7 6 11 11 N 1.31533 * 119.99865 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00011 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46862 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47095 * 120.00277 * 12 10 8 15 15 H 1.48499 * 109.47092 * 240.00285 * 12 10 8 16 16 N 1.30952 * 123.07970 * 179.68764 * 6 5 4 17 17 C 1.34792 * 121.64733 * 0.59529 * 16 6 5 18 18 C 1.39838 * 121.52822 * 179.71221 * 17 16 6 19 19 C 1.36592 * 119.81872 * 180.02562 * 18 17 16 20 20 C 1.39025 * 120.96943 * 0.02562 * 19 18 17 21 21 Cl 1.73597 * 119.72116 * 179.97438 * 20 19 18 22 22 C 1.37889 * 120.55337 * 359.96661 * 20 19 18 23 23 C 1.39386 * 119.40391 * 0.03244 * 22 20 19 24 24 C 1.35346 * 119.78779 * 89.99946 * 5 4 2 25 25 O 1.21728 * 121.25998 * 359.97438 * 24 5 4 26 26 H 1.09002 * 109.46719 * 60.00054 * 1 2 3 27 27 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47160 * 300.00333 * 1 2 3 29 29 H 1.09000 * 109.47160 * 239.99666 * 2 1 3 30 30 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46777 * 300.00227 * 3 2 1 32 32 H 1.09000 * 109.47140 * 59.99654 * 3 2 1 33 33 H 1.09004 * 109.46579 * 184.99387 * 4 2 1 34 34 H 1.08992 * 109.47046 * 304.99570 * 4 2 1 35 35 H 0.97003 * 119.99496 * 179.97438 * 11 10 8 36 36 H 1.07996 * 120.09374 * 0.02562 * 18 17 16 37 37 H 1.08004 * 119.51721 * 180.02562 * 19 18 17 38 38 H 1.08001 * 120.29873 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6522 -2.1328 1.1906 6 6 0.4616 -2.5329 1.7293 7 16 -0.5698 -1.3186 2.4819 8 6 -1.9176 -2.3339 2.9895 9 1 -1.9009 -3.3946 2.7865 10 6 -3.0009 -1.7705 3.6491 11 7 -3.0218 -0.4785 3.8950 12 14 -4.4300 -2.8467 4.1866 13 1 -4.1649 -4.2540 3.7937 14 1 -4.5835 -2.7655 5.6614 15 1 -5.6774 -2.3763 3.5324 16 7 0.0489 -3.7755 1.7075 17 6 0.7888 -4.7569 1.1541 18 6 0.3483 -6.0840 1.1375 19 6 1.1267 -7.0510 0.5676 20 6 2.3569 -6.7372 0.0010 21 17 3.3202 -7.9920 -0.7140 22 6 2.8181 -5.4378 0.0019 23 6 2.0393 -4.4356 0.5782 24 6 2.4780 -3.0332 0.6082 25 8 3.5439 -2.6944 0.1277 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 3.1262 -0.6445 1.2952 34 1 1.6053 -0.2618 2.1370 35 1 -3.7791 -0.0847 4.3557 36 1 -0.6048 -6.3437 1.5740 37 1 0.7815 -8.0743 0.5572 38 1 3.7741 -5.1986 -0.4399 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000009091547.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:36 Heat of formation + Delta-G solvation = -22.101446 kcal Electronic energy + Delta-G solvation = -24590.010274 eV Core-core repulsion = 20969.363855 eV Total energy + Delta-G solvation = -3620.646419 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 338.060 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -42.58863 -39.86291 -38.62139 -37.68023 -36.72092 -34.78389 -34.26378 -32.48650 -30.84197 -28.22938 -28.02413 -27.70316 -25.91326 -24.79956 -23.09882 -21.39209 -20.73590 -19.98890 -19.24023 -18.35416 -17.28136 -17.03728 -16.96844 -16.66621 -16.24359 -15.77382 -15.71438 -15.13762 -15.02106 -14.88983 -14.61266 -13.95292 -13.90708 -13.63959 -13.44705 -13.29898 -13.02344 -12.97570 -12.93513 -12.88461 -12.64088 -12.26272 -12.09772 -11.98700 -11.86151 -11.82125 -11.34145 -11.22984 -10.85298 -10.70141 -10.69063 -10.31042 -9.51928 -8.54852 -8.52388 -6.29570 -0.63386 -0.29897 0.59126 1.05885 1.07838 1.41554 1.42240 1.55638 1.57556 1.59685 2.12197 2.83454 2.94268 2.95379 3.13357 3.48048 3.65391 3.76260 3.79928 3.96572 4.04122 4.18148 4.30740 4.39269 4.47396 4.67747 4.75889 4.79527 4.85262 4.89962 5.01836 5.05235 5.10912 5.16842 5.17234 5.41100 5.43843 5.51306 5.54495 5.61045 6.33135 6.55006 6.91148 6.98616 8.54143 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.010157 B = 0.004702 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.957294 B = 5953.798025 C = 8447.645889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.101 4.101 3 C -0.136 4.136 4 C 0.089 3.911 5 N -0.527 5.527 6 C 0.330 3.670 7 S 0.190 5.810 8 C -0.570 4.570 9 H 0.106 0.894 10 C 0.040 3.960 11 N -0.897 5.897 12 Si 0.988 3.012 13 H -0.265 1.265 14 H -0.271 1.271 15 H -0.271 1.271 16 N -0.562 5.562 17 C 0.180 3.820 18 C -0.123 4.123 19 C -0.041 4.041 20 C -0.081 4.081 21 Cl -0.057 7.057 22 C -0.023 4.023 23 C -0.242 4.242 24 C 0.551 3.449 25 O -0.543 6.543 26 H 0.068 0.932 27 H 0.029 0.971 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.281 0.719 36 H 0.152 0.848 37 H 0.172 0.828 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.880 -4.420 -5.739 9.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.120 4.120 3 C -0.194 4.194 4 C -0.032 4.032 5 N -0.251 5.251 6 C -0.037 4.037 7 S 0.434 5.566 8 C -0.718 4.718 9 H 0.124 0.876 10 C -0.168 4.168 11 N -0.532 5.532 12 Si 0.810 3.190 13 H -0.189 1.189 14 H -0.196 1.196 15 H -0.196 1.196 16 N -0.291 5.291 17 C 0.060 3.940 18 C -0.145 4.145 19 C -0.061 4.061 20 C -0.110 4.110 21 Cl -0.029 7.029 22 C -0.043 4.043 23 C -0.251 4.251 24 C 0.344 3.656 25 O -0.422 6.422 26 H 0.087 0.913 27 H 0.049 0.951 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.091 0.909 36 H 0.170 0.830 37 H 0.190 0.810 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.858 -3.100 -5.475 9.307 hybrid contribution -0.180 -1.636 -0.141 1.652 sum 6.678 -4.736 -5.616 9.928 Atomic orbital electron populations 1.22172 0.94547 1.01097 1.02811 1.21414 0.96304 0.98148 0.96132 1.21722 1.01469 0.92756 1.03416 1.22356 1.02757 0.76927 1.01200 1.46482 1.16882 1.11378 1.50321 1.26174 0.87272 0.97578 0.92637 1.83544 1.12404 1.03361 1.57267 1.23941 1.04829 0.99457 1.43604 0.87641 1.25891 1.00429 0.96681 0.93783 1.69947 1.32661 1.11653 1.38918 0.85045 0.77079 0.78710 0.78164 1.18896 1.19616 1.19582 1.69070 1.33105 0.97808 1.29109 1.19290 0.89060 0.94742 0.90894 1.20704 1.01917 0.89156 1.02702 1.21078 0.90846 1.01264 0.92951 1.20656 0.95407 0.89220 1.05676 1.98348 1.70958 1.51254 1.82295 1.20779 0.98829 0.90086 0.94643 1.20450 0.99221 0.93466 1.12001 1.18447 0.83494 0.86056 0.77575 1.90763 1.22406 1.81486 1.47563 0.91324 0.95137 0.91247 0.92167 0.91505 0.90902 0.91328 0.87696 0.87901 0.90906 0.83040 0.81049 0.83973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.65 7.52 71.98 0.54 -4.11 16 2 C -0.10 -2.83 3.13 -10.79 -0.03 -2.86 16 3 C -0.14 -2.86 9.19 71.98 0.66 -2.20 16 4 C 0.09 2.78 4.68 86.38 0.40 3.18 16 5 N -0.53 -19.88 2.50 -643.15 -1.61 -21.49 16 6 C 0.33 13.81 6.48 179.61 1.16 14.97 16 7 S 0.19 8.35 15.58 -56.49 -0.88 7.47 16 8 C -0.57 -28.66 9.23 67.95 0.63 -28.04 16 9 H 0.11 5.46 6.48 -2.91 -0.02 5.44 16 10 C 0.04 1.95 5.49 84.87 0.47 2.42 16 11 N -0.90 -45.45 13.22 21.64 0.29 -45.17 16 12 Si 0.99 39.46 29.55 68.60 2.03 41.48 16 13 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 14 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 15 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 16 N -0.56 -24.35 8.28 -188.37 -1.56 -25.90 16 17 C 0.18 6.86 6.61 39.85 0.26 7.13 16 18 C -0.12 -3.79 9.98 22.27 0.22 -3.56 16 19 C -0.04 -1.02 9.73 22.07 0.21 -0.81 16 20 C -0.08 -2.14 6.32 22.38 0.14 -2.00 16 21 Cl -0.06 -1.28 28.94 -2.72 -0.08 -1.35 16 22 C -0.02 -0.73 9.45 22.46 0.21 -0.51 16 23 C -0.24 -8.94 5.90 -19.94 -0.12 -9.06 16 24 C 0.55 21.48 7.66 86.44 0.66 22.15 16 25 O -0.54 -21.90 16.32 -4.44 -0.07 -21.97 16 26 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.03 1.12 5.83 -2.39 -0.01 1.10 16 28 H 0.07 2.27 6.62 -2.39 -0.02 2.26 16 29 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 33 H 0.10 3.06 7.47 -2.39 -0.02 3.04 16 34 H 0.10 3.13 6.47 -2.39 -0.02 3.11 16 35 H 0.28 13.27 8.31 -92.71 -0.77 12.50 16 36 H 0.15 4.32 8.06 -2.91 -0.02 4.30 16 37 H 0.17 2.97 8.06 -2.91 -0.02 2.94 16 38 H 0.14 4.27 7.82 -2.91 -0.02 4.25 16 Total: -1.00 -57.69 342.88 4.64 -53.05 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 1.10 Total: 17.19 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: 5.43 Total: -3.30 kcal Atomic # 7 Polarization: -89.68 SS G_CDS: -2.88 Total: -92.56 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.07 Total: -21.97 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.48 kcal Atomic # 16 Polarization: 8.35 SS G_CDS: -0.88 Total: 7.47 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.08 Total: -1.35 kcal Total: -57.69 4.64 -53.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009091547.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.949 kcal (2) G-P(sol) polarization free energy of solvation -57.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds