Wall clock time and date at job start Tue Mar 31 2020 07:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46930 * 2 1 4 4 N 1.46502 * 109.47134 * 240.00267 * 2 1 3 5 5 C 1.34771 * 119.99935 * 84.99966 * 4 2 1 6 6 O 1.21591 * 120.00231 * 359.97438 * 5 4 2 7 7 C 1.47599 * 120.00007 * 179.97438 * 5 4 2 8 8 C 1.39777 * 120.06272 * 180.02562 * 7 5 4 9 9 C 1.37627 * 119.93543 * 180.22956 * 8 7 5 10 10 C 1.39264 * 120.06454 * 359.49767 * 9 8 7 11 11 N 1.39094 * 119.94114 * 180.22755 * 10 9 8 12 12 C 1.34779 * 120.00520 * 213.90642 * 11 10 9 13 13 O 1.21729 * 119.99483 * 5.27796 * 12 11 10 14 14 C 1.46195 * 120.00078 * 185.28329 * 12 11 10 15 15 H 1.07994 * 120.00176 * 0.02562 * 14 12 11 16 16 C 1.40128 * 119.99683 * 179.97438 * 14 12 11 17 17 N 1.30639 * 119.99980 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 119.99844 * 179.97438 * 16 14 12 19 19 H 1.48492 * 109.47089 * 60.00301 * 18 16 14 20 20 H 1.48500 * 109.46926 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46970 * 300.00283 * 18 16 14 22 22 C 1.39254 * 120.12034 * 0.50669 * 10 9 8 23 23 C 1.37631 * 120.06494 * 359.74315 * 22 10 9 24 24 C 1.50696 * 109.46697 * 119.99971 * 2 1 3 25 25 C 1.38227 * 119.62108 * 274.72635 * 24 2 1 26 26 C 1.38624 * 119.16309 * 179.75672 * 25 24 2 27 27 C 1.38677 * 118.41858 * 0.51217 * 26 25 24 28 28 C 1.38182 * 119.16325 * 359.73343 * 27 26 25 29 29 N 1.31856 * 119.61880 * 95.00762 * 24 2 1 30 30 H 1.09003 * 109.46775 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47138 * 300.00223 * 1 2 3 32 32 H 1.09002 * 109.47265 * 60.00221 * 1 2 3 33 33 H 0.97001 * 119.99817 * 264.99663 * 4 2 1 34 34 H 1.08002 * 120.03420 * 359.95339 * 8 7 5 35 35 H 1.07999 * 119.97045 * 179.72221 * 9 8 7 36 36 H 0.97009 * 119.99636 * 33.91040 * 11 10 9 37 37 H 0.97001 * 119.99915 * 179.97438 * 17 16 14 38 38 H 1.08005 * 119.96756 * 179.72707 * 22 10 9 39 39 H 1.07998 * 120.03305 * 179.97438 * 23 22 10 40 40 H 1.08006 * 120.41640 * 359.97438 * 25 24 2 41 41 H 1.08000 * 120.79437 * 180.21598 * 26 25 24 42 42 H 1.08005 * 120.41939 * 179.70736 * 27 26 25 43 43 H 1.08004 * 119.61852 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8575 1.1615 -2.4118 7 6 2.6396 -0.7137 -3.5621 8 6 2.7741 -0.0175 -4.7667 9 6 3.2291 -0.6698 -5.8899 10 6 3.5654 -2.0197 -5.8246 11 7 4.0295 -2.6753 -6.9602 12 6 3.7269 -3.9734 -7.1600 13 8 2.9695 -4.5459 -6.3982 14 6 4.3084 -4.6937 -8.2915 15 1 4.9808 -4.1858 -8.9670 16 6 3.9942 -6.0435 -8.4989 17 7 3.1813 -6.6579 -7.6814 18 14 4.7367 -6.9637 -9.9450 19 1 6.2172 -6.9535 -9.8308 20 1 4.2491 -8.3664 -9.9420 21 1 4.3334 -6.3026 -11.2121 22 6 3.4323 -2.7158 -4.6259 23 6 2.9729 -2.0698 -3.5008 24 6 2.0323 -0.7104 1.2305 25 6 2.1666 -0.0119 2.4157 26 6 2.6246 -0.6760 3.5430 27 6 2.9420 -2.0214 3.4330 28 6 2.7871 -2.6523 2.2134 29 7 2.3438 -1.9898 1.1627 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 2.2491 -1.6317 -1.1527 34 1 2.5170 1.0302 -4.8171 35 1 3.3290 -0.1335 -6.8220 36 1 4.5710 -2.1981 -7.6083 37 1 2.9635 -7.5922 -7.8252 38 1 3.6896 -3.7637 -4.5791 39 1 2.8695 -2.6103 -2.5715 40 1 1.9145 1.0373 2.4636 41 1 2.7362 -0.1568 4.4834 42 1 3.3062 -2.5692 4.2896 43 1 3.0317 -3.7001 2.1196 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009339150.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:13 Heat of formation + Delta-G solvation = -12.396642 kcal Electronic energy + Delta-G solvation = -27414.766924 eV Core-core repulsion = 23424.628499 eV Total energy + Delta-G solvation = -3990.138425 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 10.25 seconds Orbital eigenvalues (eV) -40.77798 -39.79253 -38.76117 -36.79857 -35.59353 -33.61009 -32.75378 -32.58280 -32.07681 -30.42258 -29.92132 -28.85218 -26.44231 -24.82025 -23.94480 -23.16594 -22.27202 -21.46846 -20.33395 -19.65209 -18.16800 -17.65546 -16.88630 -16.81048 -16.25198 -15.82720 -15.61158 -15.30915 -14.99209 -14.58810 -14.38185 -14.25618 -13.97101 -13.77100 -13.47237 -13.43744 -13.10871 -12.91202 -12.67838 -12.57795 -12.44587 -12.06808 -12.01126 -11.79252 -11.40034 -11.34097 -11.11827 -10.76162 -10.61477 -10.42020 -10.24187 -9.85671 -9.67881 -9.42171 -9.39125 -9.00995 -8.93402 -8.53546 -7.85153 -7.19920 -6.41682 -4.89580 0.73378 0.92811 1.37969 1.94775 3.04616 3.10674 3.12375 3.22455 3.22560 3.47383 3.83497 3.93668 4.23578 4.38939 4.48580 4.51660 4.53953 4.72741 4.79293 4.95617 5.08616 5.17603 5.20444 5.26961 5.36229 5.46432 5.50428 5.56492 5.66939 5.77487 5.81332 5.82149 6.02728 6.03355 6.13995 6.32993 6.50757 6.52208 6.74952 6.86186 6.96702 7.20936 7.27350 7.63785 7.64094 7.72077 7.94741 8.07190 8.43572 8.77754 9.09937 10.29054 10.48690 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016449 B = 0.002208 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.872388 B =12680.628107 C =13927.303211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.196 3.804 3 H 0.103 0.897 4 N -0.720 5.720 5 C 0.571 3.429 6 O -0.556 6.556 7 C -0.196 4.196 8 C -0.032 4.032 9 C -0.191 4.191 10 C 0.226 3.774 11 N -0.696 5.696 12 C 0.540 3.460 13 O -0.556 6.556 14 C -0.537 4.537 15 H 0.073 0.927 16 C 0.086 3.914 17 N -0.757 5.757 18 Si 0.914 3.086 19 H -0.266 1.266 20 H -0.279 1.279 21 H -0.266 1.266 22 C -0.141 4.141 23 C -0.060 4.060 24 C 0.125 3.875 25 C -0.164 4.164 26 C -0.072 4.072 27 C -0.177 4.177 28 C 0.107 3.893 29 N -0.480 5.480 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.411 0.589 34 H 0.128 0.872 35 H 0.124 0.876 36 H 0.396 0.604 37 H 0.274 0.726 38 H 0.144 0.856 39 H 0.119 0.881 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.199 10.423 19.001 21.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.090 3.910 3 H 0.121 0.879 4 N -0.374 5.374 5 C 0.361 3.639 6 O -0.435 6.435 7 C -0.200 4.200 8 C -0.052 4.052 9 C -0.213 4.213 10 C 0.125 3.875 11 N -0.338 5.338 12 C 0.347 3.653 13 O -0.438 6.438 14 C -0.572 4.572 15 H 0.091 0.909 16 C -0.136 4.136 17 N -0.385 5.385 18 Si 0.738 3.262 19 H -0.191 1.191 20 H -0.204 1.204 21 H -0.191 1.191 22 C -0.162 4.162 23 C -0.079 4.079 24 C -0.013 4.013 25 C -0.184 4.184 26 C -0.098 4.098 27 C -0.197 4.197 28 C -0.050 4.050 29 N -0.189 5.189 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.250 0.750 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.230 0.770 37 H 0.084 0.916 38 H 0.161 0.839 39 H 0.137 0.863 40 H 0.155 0.845 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.110 10.101 18.690 21.274 hybrid contribution 0.809 -0.353 -0.099 0.888 sum -0.301 9.748 18.591 20.994 Atomic orbital electron populations 1.22164 0.93655 1.02903 1.02943 1.19700 0.94509 0.96051 0.80755 0.87872 1.45873 1.67867 1.15061 1.08558 1.18340 0.76445 0.86146 0.82944 1.90706 1.51650 1.15889 1.85304 1.19504 1.11702 0.94704 0.94122 1.20821 0.94414 0.99302 0.90675 1.20862 1.06804 0.94555 0.99029 1.18213 0.90624 0.91037 0.87659 1.44246 1.54104 1.13992 1.21457 1.18430 0.81721 0.78192 0.86968 1.90649 1.38284 1.65958 1.48876 1.20836 1.29313 0.95561 1.11522 0.90907 1.25756 0.93646 0.97514 0.96671 1.69968 1.25176 1.10788 1.32570 0.86313 0.79978 0.78459 0.81415 1.19070 1.20352 1.19083 1.21255 1.02839 1.01688 0.90421 1.21076 0.96017 0.92726 0.98128 1.21347 0.94855 0.90409 0.94710 1.21864 1.01667 1.01609 0.93273 1.21580 0.95067 0.94504 0.98606 1.22177 1.02156 0.95767 0.99615 1.22806 0.93959 1.00196 0.88010 1.67290 1.10959 1.08366 1.32283 0.91934 0.91631 0.90872 0.75030 0.85392 0.85820 0.77039 0.91553 0.83879 0.86309 0.84497 0.84664 0.84672 0.82348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.47 37.16 0.35 -1.29 16 2 C 0.20 2.24 2.82 -69.08 -0.20 2.04 16 3 H 0.10 1.19 7.54 -51.93 -0.39 0.80 16 4 N -0.72 -9.80 5.00 -55.95 -0.28 -10.08 16 5 C 0.57 9.29 7.73 -12.44 -0.10 9.20 16 6 O -0.56 -10.12 16.00 5.29 0.08 -10.03 16 7 C -0.20 -3.35 5.88 -104.93 -0.62 -3.97 16 8 C -0.03 -0.55 9.58 -39.23 -0.38 -0.92 16 9 C -0.19 -3.31 9.94 -39.42 -0.39 -3.70 16 10 C 0.23 4.60 6.27 -83.81 -0.53 4.07 16 11 N -0.70 -15.09 5.30 -11.19 -0.06 -15.15 16 12 C 0.54 14.49 7.46 -13.07 -0.10 14.39 16 13 O -0.56 -16.82 12.69 5.16 0.07 -16.75 16 14 C -0.54 -14.22 9.54 -35.68 -0.34 -14.56 16 15 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 16 C 0.09 2.26 5.50 -17.35 -0.10 2.16 16 17 N -0.76 -21.46 11.82 55.55 0.66 -20.81 16 18 Si 0.91 19.05 29.56 -169.99 -5.02 14.02 16 19 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 20 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 22 C -0.14 -2.91 8.62 -39.43 -0.34 -3.25 16 23 C -0.06 -1.04 9.53 -39.23 -0.37 -1.42 16 24 C 0.13 1.30 5.89 -82.59 -0.49 0.81 16 25 C -0.16 -1.31 9.76 -39.44 -0.39 -1.70 16 26 C -0.07 -0.48 10.18 -39.28 -0.40 -0.88 16 27 C -0.18 -1.21 10.11 -39.44 -0.40 -1.61 16 28 C 0.11 0.93 11.18 -17.55 -0.20 0.73 16 29 N -0.48 -5.30 9.04 -9.47 -0.09 -5.38 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.41 5.46 5.64 -40.82 -0.23 5.23 16 34 H 0.13 1.99 7.64 -52.49 -0.40 1.59 16 35 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 36 H 0.40 7.26 8.79 -40.82 -0.36 6.90 16 37 H 0.27 7.04 8.29 -40.82 -0.34 6.70 16 38 H 0.14 3.33 6.41 -52.48 -0.34 2.99 16 39 H 0.12 1.78 6.39 -52.49 -0.34 1.44 16 40 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 41 H 0.14 0.54 8.06 -52.49 -0.42 0.11 16 42 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 43 H 0.16 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 373.48 15.07 5.63 5.63 Total: -1.00 -34.30 373.48 -8.96 -43.26 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -4.98 Total: 15.17 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -4.96 Total: 0.13 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: 0.23 Total: -51.42 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: 0.15 Total: -26.78 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.02 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.30 -8.96 -43.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009339150.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.861 kcal (2) G-P(sol) polarization free energy of solvation -34.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.25 seconds