Wall clock time and date at job start Tue Mar 31 2020 07:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46930 * 2 1 4 4 N 1.46502 * 109.47134 * 240.00267 * 2 1 3 5 5 C 1.34771 * 119.99935 * 84.99966 * 4 2 1 6 6 O 1.21591 * 120.00231 * 359.97438 * 5 4 2 7 7 C 1.47599 * 120.00007 * 179.97438 * 5 4 2 8 8 C 1.39777 * 120.06272 * 180.02562 * 7 5 4 9 9 C 1.37627 * 119.93543 * 180.22956 * 8 7 5 10 10 C 1.39264 * 120.06454 * 359.49767 * 9 8 7 11 11 N 1.39094 * 119.94114 * 180.22755 * 10 9 8 12 12 C 1.34779 * 120.00520 * 213.90642 * 11 10 9 13 13 O 1.21729 * 119.99483 * 5.27796 * 12 11 10 14 14 C 1.46195 * 120.00078 * 185.28329 * 12 11 10 15 15 H 1.07994 * 120.00176 * 0.02562 * 14 12 11 16 16 C 1.40128 * 119.99683 * 179.97438 * 14 12 11 17 17 N 1.30639 * 119.99980 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 119.99844 * 179.97438 * 16 14 12 19 19 H 1.48492 * 109.47089 * 60.00301 * 18 16 14 20 20 H 1.48500 * 109.46926 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46970 * 300.00283 * 18 16 14 22 22 C 1.39254 * 120.12034 * 0.50669 * 10 9 8 23 23 C 1.37631 * 120.06494 * 359.74315 * 22 10 9 24 24 C 1.50696 * 109.46697 * 119.99971 * 2 1 3 25 25 C 1.38227 * 119.62108 * 274.72635 * 24 2 1 26 26 C 1.38624 * 119.16309 * 179.75672 * 25 24 2 27 27 C 1.38677 * 118.41858 * 0.51217 * 26 25 24 28 28 C 1.38182 * 119.16325 * 359.73343 * 27 26 25 29 29 N 1.31856 * 119.61880 * 95.00762 * 24 2 1 30 30 H 1.09003 * 109.46775 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47138 * 300.00223 * 1 2 3 32 32 H 1.09002 * 109.47265 * 60.00221 * 1 2 3 33 33 H 0.97001 * 119.99817 * 264.99663 * 4 2 1 34 34 H 1.08002 * 120.03420 * 359.95339 * 8 7 5 35 35 H 1.07999 * 119.97045 * 179.72221 * 9 8 7 36 36 H 0.97009 * 119.99636 * 33.91040 * 11 10 9 37 37 H 0.97001 * 119.99915 * 179.97438 * 17 16 14 38 38 H 1.08005 * 119.96756 * 179.72707 * 22 10 9 39 39 H 1.07998 * 120.03305 * 179.97438 * 23 22 10 40 40 H 1.08006 * 120.41640 * 359.97438 * 25 24 2 41 41 H 1.08000 * 120.79437 * 180.21598 * 26 25 24 42 42 H 1.08005 * 120.41939 * 179.70736 * 27 26 25 43 43 H 1.08004 * 119.61852 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8575 1.1615 -2.4118 7 6 2.6396 -0.7137 -3.5621 8 6 2.7741 -0.0175 -4.7667 9 6 3.2291 -0.6698 -5.8899 10 6 3.5654 -2.0197 -5.8246 11 7 4.0295 -2.6753 -6.9602 12 6 3.7269 -3.9734 -7.1600 13 8 2.9695 -4.5459 -6.3982 14 6 4.3084 -4.6937 -8.2915 15 1 4.9808 -4.1858 -8.9670 16 6 3.9942 -6.0435 -8.4989 17 7 3.1813 -6.6579 -7.6814 18 14 4.7367 -6.9637 -9.9450 19 1 6.2172 -6.9535 -9.8308 20 1 4.2491 -8.3664 -9.9420 21 1 4.3334 -6.3026 -11.2121 22 6 3.4323 -2.7158 -4.6259 23 6 2.9729 -2.0698 -3.5008 24 6 2.0323 -0.7104 1.2305 25 6 2.1666 -0.0119 2.4157 26 6 2.6246 -0.6760 3.5430 27 6 2.9420 -2.0214 3.4330 28 6 2.7871 -2.6523 2.2134 29 7 2.3438 -1.9898 1.1627 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 2.2491 -1.6317 -1.1527 34 1 2.5170 1.0302 -4.8171 35 1 3.3290 -0.1335 -6.8220 36 1 4.5710 -2.1981 -7.6083 37 1 2.9635 -7.5922 -7.8252 38 1 3.6896 -3.7637 -4.5791 39 1 2.8695 -2.6103 -2.5715 40 1 1.9145 1.0373 2.4636 41 1 2.7362 -0.1568 4.4834 42 1 3.3062 -2.5692 4.2896 43 1 3.0317 -3.7001 2.1196 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000009339150.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:03 Heat of formation + Delta-G solvation = -35.506825 kcal Electronic energy + Delta-G solvation = -27415.769057 eV Core-core repulsion = 23424.628499 eV Total energy + Delta-G solvation = -3991.140557 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.64118 -41.05270 -40.26256 -38.50040 -36.64416 -35.39212 -34.56876 -33.35747 -33.14152 -31.82146 -31.05383 -30.12133 -28.34285 -25.73561 -24.72070 -24.33441 -23.75517 -22.58408 -21.73928 -21.14421 -19.51203 -19.30597 -17.99579 -17.80422 -17.53543 -17.42077 -16.59573 -16.39548 -16.13610 -15.98459 -15.62393 -15.58553 -15.25739 -14.94910 -14.79939 -14.54930 -14.38712 -14.17528 -13.99479 -13.79449 -13.56250 -13.39187 -13.18697 -13.11847 -12.81724 -12.76253 -12.72884 -12.24513 -12.11423 -12.07094 -11.12673 -11.06751 -10.87887 -10.82857 -10.50854 -10.23985 -10.09406 -9.88760 -9.82088 -8.86989 -8.38648 -6.96674 -0.09114 0.12186 0.35943 0.47689 1.40565 1.42271 1.55450 1.82055 2.12725 2.20450 2.38932 2.81605 2.84021 2.95767 3.11953 3.54767 3.74725 3.80709 3.88716 4.02564 4.05805 4.16808 4.19288 4.27288 4.29677 4.38759 4.52260 4.55142 4.67114 4.73489 4.80002 4.86129 5.04076 5.13777 5.18705 5.24291 5.27138 5.28341 5.36519 5.41278 5.46120 5.72507 5.77169 5.78884 6.13179 6.28801 6.50750 6.76156 6.98227 7.18207 7.27325 8.30716 8.54287 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016449 B = 0.002208 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.872388 B =12680.628107 C =13927.303211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.193 3.807 3 H 0.102 0.898 4 N -0.711 5.711 5 C 0.571 3.429 6 O -0.575 6.575 7 C -0.192 4.192 8 C -0.032 4.032 9 C -0.174 4.174 10 C 0.197 3.803 11 N -0.689 5.689 12 C 0.528 3.472 13 O -0.602 6.602 14 C -0.563 4.563 15 H 0.095 0.905 16 C 0.030 3.970 17 N -0.811 5.811 18 Si 1.001 2.999 19 H -0.253 1.253 20 H -0.275 1.275 21 H -0.254 1.254 22 C -0.162 4.162 23 C -0.052 4.052 24 C 0.102 3.898 25 C -0.165 4.165 26 C -0.071 4.071 27 C -0.170 4.170 28 C 0.086 3.914 29 N -0.512 5.512 30 H 0.054 0.946 31 H 0.091 0.909 32 H 0.056 0.944 33 H 0.412 0.588 34 H 0.148 0.852 35 H 0.154 0.846 36 H 0.411 0.589 37 H 0.278 0.722 38 H 0.107 0.893 39 H 0.138 0.862 40 H 0.157 0.843 41 H 0.168 0.832 42 H 0.164 0.836 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.511 11.816 19.923 23.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.088 3.912 3 H 0.120 0.880 4 N -0.363 5.363 5 C 0.361 3.639 6 O -0.456 6.456 7 C -0.196 4.196 8 C -0.051 4.051 9 C -0.195 4.195 10 C 0.097 3.903 11 N -0.332 5.332 12 C 0.335 3.665 13 O -0.488 6.488 14 C -0.598 4.598 15 H 0.113 0.887 16 C -0.187 4.187 17 N -0.440 5.440 18 Si 0.820 3.180 19 H -0.177 1.177 20 H -0.199 1.199 21 H -0.177 1.177 22 C -0.184 4.184 23 C -0.071 4.071 24 C -0.036 4.036 25 C -0.185 4.185 26 C -0.097 4.097 27 C -0.189 4.189 28 C -0.070 4.070 29 N -0.222 5.222 30 H 0.073 0.927 31 H 0.110 0.890 32 H 0.075 0.925 33 H 0.251 0.749 34 H 0.166 0.834 35 H 0.171 0.829 36 H 0.247 0.753 37 H 0.088 0.912 38 H 0.125 0.875 39 H 0.155 0.845 40 H 0.175 0.825 41 H 0.185 0.815 42 H 0.181 0.819 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -0.386 11.548 19.644 22.790 hybrid contribution 0.566 -0.686 -0.167 0.905 sum 0.180 10.862 19.477 22.302 Atomic orbital electron populations 1.22100 0.93006 1.02480 1.03380 1.19856 0.95044 0.95925 0.80389 0.87993 1.45892 1.66658 1.15073 1.08680 1.18182 0.76533 0.85874 0.83319 1.90695 1.52760 1.16518 1.85647 1.19760 1.10462 0.94403 0.95013 1.21101 0.93611 1.00181 0.90240 1.21076 1.04971 0.93012 1.00429 1.18436 0.92448 0.92373 0.87047 1.43762 1.54427 1.12712 1.22346 1.18761 0.81307 0.79644 0.86795 1.90609 1.40246 1.67630 1.50296 1.21393 1.29929 0.96517 1.11986 0.88697 1.27005 0.93558 0.98364 0.99782 1.70132 1.27174 1.11463 1.35192 0.85013 0.79332 0.76670 0.77019 1.17718 1.19938 1.17743 1.21077 1.04802 1.00348 0.92124 1.21145 0.95032 0.93063 0.97892 1.21233 0.96721 0.90632 0.94995 1.22119 1.01025 1.02569 0.92771 1.22006 0.93768 0.94512 0.99380 1.22522 1.00660 0.96124 0.99637 1.23154 0.94422 1.00975 0.88482 1.67183 1.12144 1.09029 1.33843 0.92722 0.89049 0.92506 0.74932 0.83408 0.82856 0.75259 0.91158 0.87475 0.84477 0.82518 0.81466 0.81856 0.81203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 9.47 71.98 0.68 -2.37 16 2 C 0.19 4.30 2.82 44.25 0.12 4.42 16 3 H 0.10 2.28 7.54 -2.38 -0.02 2.26 16 4 N -0.71 -19.27 5.00 -449.20 -2.25 -21.51 16 5 C 0.57 18.33 7.73 86.71 0.67 19.00 16 6 O -0.57 -20.44 16.00 -4.00 -0.06 -20.50 16 7 C -0.19 -6.50 5.88 -20.06 -0.12 -6.62 16 8 C -0.03 -1.03 9.58 22.50 0.22 -0.82 16 9 C -0.17 -5.84 9.94 22.37 0.22 -5.62 16 10 C 0.20 8.17 6.27 38.48 0.24 8.41 16 11 N -0.69 -30.59 5.30 -307.50 -1.63 -32.22 16 12 C 0.53 29.44 7.46 86.31 0.64 30.08 16 13 O -0.60 -38.53 12.69 -4.44 -0.06 -38.58 16 14 C -0.56 -30.32 9.54 24.80 0.24 -30.09 16 15 H 0.09 4.50 7.85 -2.91 -0.02 4.47 16 16 C 0.03 1.58 5.50 85.33 0.47 2.05 16 17 N -0.81 -47.66 11.82 21.85 0.26 -47.40 16 18 Si 1.00 39.00 29.56 68.60 2.03 41.03 16 19 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 20 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 21 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 22 C -0.16 -7.03 8.62 22.37 0.19 -6.84 16 23 C -0.05 -1.86 9.53 22.50 0.21 -1.64 16 24 C 0.10 2.02 5.89 42.55 0.25 2.27 16 25 C -0.16 -2.28 9.76 22.36 0.22 -2.06 16 26 C -0.07 -0.73 10.18 22.47 0.23 -0.50 16 27 C -0.17 -1.90 10.11 22.36 0.23 -1.67 16 28 C 0.09 1.41 11.18 84.67 0.95 2.36 16 29 N -0.51 -11.13 9.04 -183.89 -1.66 -12.79 16 30 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.41 11.06 5.64 -92.71 -0.52 10.54 16 34 H 0.15 4.27 7.64 -2.91 -0.02 4.24 16 35 H 0.15 4.19 8.06 -2.91 -0.02 4.16 16 36 H 0.41 15.09 8.79 -92.70 -0.82 14.28 16 37 H 0.28 14.84 8.29 -92.71 -0.77 14.07 16 38 H 0.11 5.42 6.41 -2.91 -0.02 5.41 16 39 H 0.14 4.25 6.39 -2.91 -0.02 4.23 16 40 H 0.16 1.42 8.06 -2.91 -0.02 1.39 16 41 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 42 H 0.16 0.83 8.06 -2.91 -0.02 0.80 16 43 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -78.17 373.48 2.03 -76.14 By element: Atomic # 1 Polarization: 45.74 SS G_CDS: -0.26 Total: 45.48 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 5.67 Total: 10.36 kcal Atomic # 7 Polarization: -108.64 SS G_CDS: -5.28 Total: -113.92 kcal Atomic # 8 Polarization: -58.96 SS G_CDS: -0.12 Total: -59.08 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Total: -78.17 2.03 -76.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009339150.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.629 kcal (2) G-P(sol) polarization free energy of solvation -78.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds