Wall clock time and date at job start Tue Mar 31 2020 07:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46699 * 2 1 4 4 N 1.46501 * 109.47161 * 120.00086 * 2 1 3 5 5 C 1.34776 * 119.99779 * 275.00064 * 4 2 1 6 6 O 1.21586 * 120.00503 * 359.97438 * 5 4 2 7 7 C 1.47597 * 119.99950 * 180.02562 * 5 4 2 8 8 C 1.39783 * 120.06019 * 359.72188 * 7 5 4 9 9 C 1.37634 * 119.93718 * 179.79352 * 8 7 5 10 10 C 1.39259 * 120.05839 * 0.46048 * 9 8 7 11 11 N 1.39106 * 119.93259 * 179.76883 * 10 9 8 12 12 C 1.34778 * 119.99550 * 213.66092 * 11 10 9 13 13 O 1.21723 * 120.00283 * 5.27584 * 12 11 10 14 14 C 1.46195 * 119.99571 * 185.28030 * 12 11 10 15 15 H 1.08002 * 120.00409 * 359.97438 * 14 12 11 16 16 C 1.40120 * 119.99987 * 179.97438 * 14 12 11 17 17 N 1.30643 * 120.00020 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 120.00346 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47035 * 59.99907 * 18 16 14 20 20 H 1.48497 * 109.47423 * 180.02562 * 18 16 14 21 21 H 1.48509 * 109.46931 * 300.00265 * 18 16 14 22 22 C 1.39254 * 120.12787 * 359.79350 * 10 9 8 23 23 C 1.37623 * 120.06069 * 359.97104 * 22 10 9 24 24 C 1.50698 * 109.47145 * 240.00355 * 2 1 3 25 25 C 1.38220 * 119.61991 * 84.99489 * 24 2 1 26 26 C 1.38635 * 119.16411 * 180.02562 * 25 24 2 27 27 C 1.38668 * 118.41657 * 0.02562 * 26 25 24 28 28 C 1.38190 * 119.16525 * 0.27350 * 27 26 25 29 29 N 1.31850 * 119.61678 * 265.01934 * 24 2 1 30 30 H 1.09002 * 109.46797 * 299.99646 * 1 2 3 31 31 H 1.09000 * 109.47064 * 60.00014 * 1 2 3 32 32 H 1.09003 * 109.46699 * 180.02562 * 1 2 3 33 33 H 0.96996 * 120.00263 * 95.00282 * 4 2 1 34 34 H 1.07997 * 120.02959 * 0.02678 * 8 7 5 35 35 H 1.08003 * 119.96833 * 180.21442 * 9 8 7 36 36 H 0.97000 * 120.00064 * 33.66220 * 11 10 9 37 37 H 0.96998 * 120.00086 * 179.97438 * 17 16 14 38 38 H 1.07995 * 119.96654 * 179.97438 * 22 10 9 39 39 H 1.08001 * 120.03122 * 179.97438 * 23 22 10 40 40 H 1.08005 * 120.42038 * 0.02562 * 25 24 2 41 41 H 1.08000 * 120.78931 * 180.02562 * 26 25 24 42 42 H 1.07998 * 120.42111 * 180.02562 * 27 26 25 43 43 H 1.07996 * 119.61577 * 179.70828 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.8584 1.1616 2.4117 7 6 2.6396 -0.7139 3.5621 8 6 2.9675 -2.0714 3.5021 9 6 3.4305 -2.7165 4.6262 10 6 3.5635 -2.0204 5.8250 11 7 4.0272 -2.6762 6.9607 12 6 3.5647 -2.3257 8.1772 13 8 2.6725 -1.5036 8.2755 14 6 4.1348 -2.9331 9.3787 15 1 4.9262 -3.6628 9.2915 16 6 3.6544 -2.5684 10.6434 17 7 2.6967 -1.6861 10.7489 18 14 4.3832 -3.3438 12.1787 19 1 5.8351 -3.0399 12.2452 20 1 3.7062 -2.7935 13.3804 21 1 4.1871 -4.8151 12.1309 22 6 3.2326 -0.6692 5.8890 23 6 2.7737 -0.0179 4.7669 24 6 2.0324 -0.7103 -1.2305 25 6 2.1613 -0.0131 -2.4170 26 6 2.6238 -0.6760 -3.5433 27 6 2.9402 -2.0217 -3.4336 28 6 2.7798 -2.6541 -2.2154 29 7 2.3434 -1.9898 -1.1629 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2491 -1.6317 1.1526 34 1 2.8610 -2.6125 2.5736 35 1 3.6873 -3.7645 4.5795 36 1 4.6834 -3.3856 6.8772 37 1 2.3639 -1.4339 11.6244 38 1 3.3363 -0.1320 6.8201 39 1 2.5168 1.0299 4.8172 40 1 1.9049 1.0349 -2.4661 41 1 2.7349 -0.1568 -4.4837 42 1 3.3037 -2.5696 -4.2904 43 1 3.0196 -3.7030 -2.1229 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009339151.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:38 Heat of formation + Delta-G solvation = -11.935451 kcal Electronic energy + Delta-G solvation = -27285.196665 eV Core-core repulsion = 23295.078239 eV Total energy + Delta-G solvation = -3990.118426 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 6.02 seconds Orbital eigenvalues (eV) -40.82991 -39.80472 -38.76370 -36.79777 -35.62656 -33.59232 -32.81432 -32.54239 -32.15089 -30.43279 -29.95660 -28.85149 -26.43538 -24.84611 -23.99901 -23.20215 -22.34299 -21.33806 -20.47784 -19.62982 -18.20271 -17.64854 -16.90857 -16.85689 -16.25694 -15.87343 -15.52638 -15.39937 -15.03766 -14.60876 -14.40142 -14.27227 -13.98623 -13.78479 -13.51416 -13.44545 -13.06820 -12.97146 -12.71365 -12.65493 -12.46065 -12.13817 -11.92033 -11.78490 -11.42570 -11.33479 -11.10878 -10.74443 -10.61251 -10.40969 -10.30069 -9.92353 -9.69261 -9.45783 -9.40331 -9.02928 -8.93230 -8.53274 -7.83807 -7.19628 -6.40180 -4.88430 0.67395 0.86577 1.38641 1.93603 3.05469 3.11433 3.13352 3.18684 3.22619 3.41660 3.77768 3.94524 4.24474 4.33690 4.45411 4.48857 4.54386 4.67092 4.73876 4.92586 5.05350 5.12519 5.15718 5.26445 5.30626 5.38446 5.47742 5.57215 5.62950 5.73760 5.77277 5.87200 6.00055 6.03532 6.18890 6.26995 6.46602 6.50133 6.65735 6.93041 6.98790 7.22342 7.29955 7.56916 7.64498 7.70250 7.95382 8.07840 8.43268 8.78933 9.10906 10.30476 10.50174 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028507 B = 0.001934 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.989288 B =14473.913984 C =15175.339268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.195 3.805 3 H 0.104 0.896 4 N -0.721 5.721 5 C 0.570 3.430 6 O -0.551 6.551 7 C -0.195 4.195 8 C -0.059 4.059 9 C -0.189 4.189 10 C 0.226 3.774 11 N -0.696 5.696 12 C 0.539 3.461 13 O -0.555 6.555 14 C -0.537 4.537 15 H 0.073 0.927 16 C 0.085 3.915 17 N -0.757 5.757 18 Si 0.914 3.086 19 H -0.266 1.266 20 H -0.278 1.278 21 H -0.266 1.266 22 C -0.143 4.143 23 C -0.034 4.034 24 C 0.126 3.874 25 C -0.163 4.163 26 C -0.071 4.071 27 C -0.178 4.178 28 C 0.106 3.894 29 N -0.481 5.481 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.410 0.590 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.395 0.605 37 H 0.274 0.726 38 H 0.144 0.856 39 H 0.129 0.871 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.929 -1.602 -26.449 26.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.089 3.911 3 H 0.122 0.878 4 N -0.375 5.375 5 C 0.360 3.640 6 O -0.430 6.430 7 C -0.200 4.200 8 C -0.078 4.078 9 C -0.211 4.211 10 C 0.125 3.875 11 N -0.338 5.338 12 C 0.346 3.654 13 O -0.437 6.437 14 C -0.573 4.573 15 H 0.091 0.909 16 C -0.136 4.136 17 N -0.384 5.384 18 Si 0.738 3.262 19 H -0.191 1.191 20 H -0.203 1.203 21 H -0.191 1.191 22 C -0.164 4.164 23 C -0.053 4.053 24 C -0.012 4.012 25 C -0.183 4.183 26 C -0.097 4.097 27 C -0.198 4.198 28 C -0.051 4.051 29 N -0.191 5.191 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.248 0.752 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.229 0.771 37 H 0.085 0.915 38 H 0.162 0.838 39 H 0.147 0.853 40 H 0.156 0.844 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.115 -0.522 -25.274 25.280 hybrid contribution 0.868 -0.960 -0.291 1.327 sum 0.753 -1.483 -25.565 25.619 Atomic orbital electron populations 1.22167 0.93634 1.02818 1.03050 1.19705 0.94509 0.96135 0.80720 0.87829 1.45851 1.68174 1.14900 1.08568 1.18360 0.76516 0.86236 0.82895 1.90724 1.51230 1.15861 1.85194 1.19503 1.11662 0.94751 0.94054 1.20863 0.96345 0.93071 0.97552 1.20785 1.07674 0.99614 0.92999 1.18214 0.91134 0.91145 0.87042 1.44250 1.44927 1.39006 1.05609 1.18437 0.82732 0.83105 0.81094 1.90658 1.31827 1.36158 1.85008 1.20830 1.21127 1.26037 0.89264 0.90916 1.25759 0.93787 0.93783 1.00290 1.69968 1.19890 1.23268 1.25320 0.86313 0.79809 0.79960 0.80068 1.19075 1.20343 1.19107 1.21321 1.02613 0.93222 0.99264 1.21048 0.94008 0.99787 0.90491 1.21346 0.94734 0.90374 0.94728 1.21884 1.01505 1.01698 0.93260 1.21591 0.94950 0.94511 0.98643 1.22170 1.02198 0.95767 0.99622 1.22778 0.94168 1.00112 0.88050 1.67274 1.11155 1.08394 1.32234 0.90786 0.91621 0.92017 0.75247 0.86386 0.85920 0.77081 0.91528 0.83800 0.85307 0.84434 0.84628 0.84689 0.82443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.47 37.16 0.35 -1.23 16 2 C 0.20 2.14 2.82 -69.08 -0.20 1.94 16 3 H 0.10 1.18 7.55 -51.93 -0.39 0.79 16 4 N -0.72 -9.29 5.00 -55.95 -0.28 -9.57 16 5 C 0.57 9.26 7.73 -12.44 -0.10 9.16 16 6 O -0.55 -10.37 16.00 5.29 0.08 -10.29 16 7 C -0.20 -3.34 5.88 -104.93 -0.62 -3.95 16 8 C -0.06 -0.89 9.53 -39.22 -0.37 -1.27 16 9 C -0.19 -3.13 9.94 -39.42 -0.39 -3.52 16 10 C 0.23 4.60 6.27 -83.80 -0.53 4.08 16 11 N -0.70 -15.10 5.30 -11.18 -0.06 -15.16 16 12 C 0.54 14.59 7.46 -13.07 -0.10 14.49 16 13 O -0.56 -17.02 12.69 5.17 0.07 -16.95 16 14 C -0.54 -14.30 9.54 -35.68 -0.34 -14.64 16 15 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 16 C 0.09 2.27 5.50 -17.35 -0.10 2.17 16 17 N -0.76 -21.67 11.83 55.55 0.66 -21.01 16 18 Si 0.91 19.17 29.56 -169.99 -5.02 14.14 16 19 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 20 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 21 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 22 C -0.14 -3.06 8.62 -39.43 -0.34 -3.40 16 23 C -0.03 -0.64 9.58 -39.23 -0.38 -1.02 16 24 C 0.13 1.22 5.89 -82.59 -0.49 0.73 16 25 C -0.16 -1.22 9.77 -39.44 -0.39 -1.60 16 26 C -0.07 -0.43 10.18 -39.28 -0.40 -0.83 16 27 C -0.18 -1.05 10.11 -39.44 -0.40 -1.45 16 28 C 0.11 0.79 11.18 -17.55 -0.20 0.59 16 29 N -0.48 -4.74 9.04 -9.48 -0.09 -4.83 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.41 4.86 5.64 -40.82 -0.23 4.63 16 34 H 0.12 1.41 6.39 -52.49 -0.34 1.07 16 35 H 0.12 1.71 8.06 -52.48 -0.42 1.29 16 36 H 0.40 7.20 8.79 -40.82 -0.36 6.84 16 37 H 0.27 7.12 8.29 -40.82 -0.34 6.78 16 38 H 0.14 3.48 6.41 -52.49 -0.34 3.15 16 39 H 0.13 2.40 7.64 -52.49 -0.40 2.00 16 40 H 0.14 0.76 8.06 -52.48 -0.42 0.33 16 41 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 42 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 43 H 0.16 0.79 8.06 -52.49 -0.42 0.36 16 LS Contribution 373.49 15.07 5.63 5.63 Total: -1.00 -34.83 373.49 -8.96 -43.79 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -4.98 Total: 14.00 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -4.96 Total: 0.25 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: 0.23 Total: -50.57 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: 0.15 Total: -27.24 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.14 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.83 -8.96 -43.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009339151.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.853 kcal (2) G-P(sol) polarization free energy of solvation -34.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.02 seconds