Wall clock time and date at job start Tue Mar 31 2020 05:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.47078 * 2 1 4 4 C 1.38285 * 119.92602 * 90.00135 * 3 2 1 5 5 C 1.38114 * 120.07139 * 180.02562 * 4 3 2 6 6 C 1.38892 * 119.92824 * 0.02562 * 5 4 3 7 7 N 1.39842 * 120.07072 * 180.02562 * 6 5 4 8 8 C 1.34782 * 119.99646 * 144.93808 * 7 6 5 9 9 O 1.21590 * 120.00400 * 4.34173 * 8 7 6 10 10 C 1.47562 * 119.99669 * 184.34680 * 8 7 6 11 11 C 1.39796 * 120.06446 * 359.72518 * 10 8 7 12 12 C 1.37625 * 119.93571 * 179.76458 * 11 10 8 13 13 C 1.39265 * 120.06663 * 0.48452 * 12 11 10 14 14 N 1.39092 * 119.94096 * 179.74431 * 13 12 11 15 15 C 1.34779 * 120.00013 * 215.19683 * 14 13 12 16 16 O 1.21728 * 119.99665 * 355.42665 * 15 14 13 17 17 C 1.46193 * 119.99888 * 175.42709 * 15 14 13 18 18 H 1.08000 * 120.00244 * 5.07417 * 17 15 14 19 19 C 1.40120 * 119.99817 * 185.06565 * 17 15 14 20 20 N 1.30635 * 120.00512 * 5.07611 * 19 17 15 21 21 Si 1.86800 * 119.99989 * 185.07687 * 19 17 15 22 22 H 1.48499 * 109.47472 * 94.99939 * 21 19 17 23 23 H 1.48500 * 109.47218 * 215.00136 * 21 19 17 24 24 H 1.48502 * 109.46846 * 334.99964 * 21 19 17 25 25 C 1.39266 * 120.11980 * 359.76544 * 13 12 11 26 26 C 1.37623 * 120.06875 * 0.02562 * 25 13 12 27 27 C 1.38900 * 119.85309 * 0.27355 * 6 5 4 28 28 C 1.38108 * 119.92407 * 359.45370 * 27 6 5 29 29 H 1.09001 * 109.47612 * 59.99829 * 1 2 3 30 30 H 1.09002 * 109.47130 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46991 * 299.99698 * 1 2 3 32 32 H 1.08997 * 109.46737 * 239.99955 * 2 1 3 33 33 H 1.08998 * 109.46932 * 120.00417 * 2 1 3 34 34 H 1.08001 * 119.96792 * 0.04290 * 4 3 2 35 35 H 1.08003 * 120.03627 * 179.97438 * 5 4 3 36 36 H 0.96991 * 119.99994 * 324.65269 * 7 6 5 37 37 H 1.08000 * 120.03081 * 359.97318 * 11 10 8 38 38 H 1.08003 * 119.96783 * 180.22608 * 12 11 10 39 39 H 0.97002 * 119.99928 * 35.18876 * 14 13 12 40 40 H 0.96996 * 120.01090 * 179.97438 * 20 19 17 41 41 H 1.08006 * 119.96066 * 179.97438 * 25 13 12 42 42 H 1.07995 * 120.03440 * 179.97438 * 26 25 13 43 43 H 1.07998 * 120.03407 * 179.72795 * 27 6 5 44 44 H 1.07995 * 119.96128 * 180.25537 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2623 2.0712 1.1985 5 6 2.7222 3.3735 1.2020 6 6 2.9531 4.0301 0.0000 7 7 3.4192 5.3485 0.0001 8 6 4.2753 5.7607 -0.9559 9 8 4.5807 5.0107 -1.8629 10 6 4.8418 7.1221 -0.9018 11 6 4.4872 7.9874 0.1373 12 6 5.0210 9.2550 0.1879 13 6 5.9058 9.6794 -0.8003 14 7 6.4396 10.9628 -0.7495 15 6 6.6698 11.6425 -1.8904 16 8 6.4892 11.1037 -2.9669 17 6 7.1362 13.0269 -1.8349 18 1 7.3748 13.4787 -0.8834 19 6 7.2739 13.7676 -3.0163 20 7 6.8922 13.2563 -4.1563 21 14 8.0032 15.4865 -2.9614 22 1 9.4573 15.4169 -3.2545 23 1 7.3343 16.3407 -3.9753 24 1 7.7978 16.0684 -1.6107 25 6 6.2568 8.8212 -1.8395 26 6 5.7295 7.5511 -1.8929 27 6 2.7152 3.3760 -1.2020 28 6 2.2607 2.0718 -1.1984 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.0824 1.5602 2.1328 35 1 2.9012 3.8811 2.1383 36 1 3.1233 5.9675 0.6857 37 1 3.7977 7.6604 0.9015 38 1 4.7502 9.9227 0.9924 39 1 6.6461 11.3686 0.1069 40 1 6.9872 13.7691 -4.9741 41 1 6.9429 9.1532 -2.6047 42 1 6.0017 6.8863 -2.6992 43 1 2.8896 3.8852 -2.1383 44 1 2.0794 1.5613 -2.1327 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009742513.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:52 Heat of formation + Delta-G solvation = -28.751500 kcal Electronic energy + Delta-G solvation = -26773.284534 eV Core-core repulsion = 22847.862820 eV Total energy + Delta-G solvation = -3925.421714 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 21.60 seconds Orbital eigenvalues (eV) -40.70462 -39.42817 -38.60053 -36.86385 -35.43912 -33.73630 -33.16338 -32.59586 -31.07167 -30.58463 -29.80340 -28.32038 -26.48543 -24.35483 -23.17127 -23.03682 -22.31191 -21.16143 -20.57870 -19.76532 -18.29959 -17.78275 -17.10442 -16.39703 -15.91680 -15.66668 -15.54753 -15.18596 -14.64733 -14.49689 -14.19852 -14.04613 -13.89730 -13.77391 -13.51193 -13.36502 -13.19901 -12.89913 -12.75684 -12.71570 -12.26949 -11.99990 -11.88530 -11.59191 -11.39231 -11.29011 -11.19248 -11.09748 -10.83911 -10.71578 -10.41972 -10.29540 -9.78038 -9.48851 -9.03904 -9.01058 -8.65854 -8.14454 -7.86881 -7.33593 -6.47328 -4.93583 0.99322 1.28419 1.37718 1.80837 2.97758 3.01507 3.04403 3.08788 3.11932 3.65767 3.89680 4.15018 4.37182 4.44756 4.55441 4.61058 4.81132 4.86964 4.93301 5.07793 5.08533 5.23943 5.26057 5.28209 5.38707 5.48423 5.51202 5.60930 5.72366 5.75086 5.87060 5.89354 5.91795 6.06655 6.17765 6.24595 6.35545 6.41571 6.48611 6.51645 6.79156 6.89677 6.95446 7.15284 7.20926 7.37461 7.56215 7.86712 8.01253 8.16809 8.73684 9.03051 10.23102 10.43774 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.042910 B = 0.001720 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.370862 B =16271.153077 C =16662.231735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 C -0.104 4.104 4 C -0.101 4.101 5 C -0.146 4.146 6 C 0.148 3.852 7 N -0.677 5.677 8 C 0.569 3.431 9 O -0.528 6.528 10 C -0.198 4.198 11 C -0.061 4.061 12 C -0.186 4.186 13 C 0.227 3.773 14 N -0.695 5.695 15 C 0.540 3.460 16 O -0.556 6.556 17 C -0.537 4.537 18 H 0.074 0.926 19 C 0.087 3.913 20 N -0.757 5.757 21 Si 0.915 3.085 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.263 1.263 25 C -0.143 4.143 26 C -0.032 4.032 27 C -0.118 4.118 28 C -0.099 4.099 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.409 0.591 37 H 0.117 0.883 38 H 0.125 0.875 39 H 0.397 0.603 40 H 0.274 0.726 41 H 0.151 0.849 42 H 0.130 0.870 43 H 0.140 0.860 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.682 -18.166 12.277 23.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.105 4.105 4 C -0.119 4.119 5 C -0.166 4.166 6 C 0.054 3.946 7 N -0.322 5.322 8 C 0.361 3.639 9 O -0.405 6.405 10 C -0.202 4.202 11 C -0.080 4.080 12 C -0.208 4.208 13 C 0.125 3.875 14 N -0.337 5.337 15 C 0.347 3.653 16 O -0.438 6.438 17 C -0.573 4.573 18 H 0.092 0.908 19 C -0.135 4.135 20 N -0.384 5.384 21 Si 0.739 3.261 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.187 1.187 25 C -0.164 4.164 26 C -0.052 4.052 27 C -0.138 4.138 28 C -0.118 4.118 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.246 0.754 37 H 0.135 0.865 38 H 0.143 0.857 39 H 0.230 0.770 40 H 0.085 0.915 41 H 0.168 0.832 42 H 0.148 0.852 43 H 0.158 0.842 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.532 -18.855 10.590 23.634 hybrid contribution 0.235 1.523 0.897 1.783 sum -9.297 -17.333 11.487 22.778 Atomic orbital electron populations 1.21757 0.94882 1.01521 1.02240 1.20496 0.96030 0.92732 1.02690 1.19858 1.00980 0.96460 0.93171 1.20756 0.99627 0.93999 0.97537 1.20890 1.03991 0.95296 0.96437 1.17778 0.97721 0.85039 0.94076 1.43474 1.46352 1.10580 1.31826 1.18484 0.77264 0.87364 0.80755 1.90738 1.60118 1.55731 1.33865 1.19415 1.06576 0.93564 1.00669 1.20807 0.97741 0.93275 0.96200 1.20812 1.00404 0.97354 1.02235 1.18261 0.89955 0.85548 0.93715 1.44232 1.64937 1.12878 1.11619 1.18474 0.78398 0.87090 0.81336 1.90631 1.55590 1.69760 1.27833 1.20860 1.46643 0.95385 0.94377 0.90776 1.25749 0.93388 0.99676 0.94707 1.69953 1.33009 1.36582 0.98889 0.86234 0.79546 0.81336 0.79020 1.19522 1.20213 1.18702 1.21523 1.02718 0.91651 1.00495 1.21090 0.92856 0.95281 0.95940 1.21350 0.98857 0.95452 0.98129 1.20933 0.98963 0.94335 0.97575 0.92527 0.92569 0.92615 0.91149 0.91228 0.85958 0.85792 0.75379 0.86536 0.85725 0.76966 0.91503 0.83159 0.85187 0.84225 0.85941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.89 37.16 0.37 -0.54 16 2 C -0.08 -0.57 6.06 -27.89 -0.17 -0.74 16 3 C -0.10 -0.98 5.14 -104.59 -0.54 -1.51 16 4 C -0.10 -0.91 9.69 -39.61 -0.38 -1.29 16 5 C -0.15 -1.44 9.97 -39.38 -0.39 -1.83 16 6 C 0.15 1.80 6.29 -83.72 -0.53 1.28 16 7 N -0.68 -8.13 5.28 -10.79 -0.06 -8.19 16 8 C 0.57 8.78 7.60 -12.46 -0.09 8.68 16 9 O -0.53 -9.62 13.79 5.29 0.07 -9.55 16 10 C -0.20 -3.14 5.88 -104.93 -0.62 -3.75 16 11 C -0.06 -0.83 9.53 -39.22 -0.37 -1.20 16 12 C -0.19 -2.86 9.95 -39.42 -0.39 -3.26 16 13 C 0.23 4.39 6.29 -83.80 -0.53 3.87 16 14 N -0.69 -14.48 5.29 -11.18 -0.06 -14.54 16 15 C 0.54 14.22 7.56 -13.07 -0.10 14.12 16 16 O -0.56 -16.61 12.48 5.16 0.06 -16.55 16 17 C -0.54 -14.01 9.53 -35.68 -0.34 -14.35 16 18 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 19 C 0.09 2.25 5.49 -17.35 -0.10 2.16 16 20 N -0.76 -21.31 11.87 55.55 0.66 -20.65 16 21 Si 0.91 18.82 29.56 -169.99 -5.03 13.80 16 22 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 23 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 24 H -0.26 -5.21 7.11 56.52 0.40 -4.80 16 25 C -0.14 -2.92 8.66 -39.42 -0.34 -3.26 16 26 C -0.03 -0.58 9.58 -39.22 -0.38 -0.95 16 27 C -0.12 -1.53 8.69 -39.38 -0.34 -1.87 16 28 C -0.10 -1.07 9.69 -39.61 -0.38 -1.46 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.35 8.14 -51.92 -0.42 -0.08 16 32 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 33 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 34 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 35 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 36 H 0.41 3.66 6.85 -40.82 -0.28 3.38 16 37 H 0.12 1.10 6.40 -52.49 -0.34 0.77 16 38 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 39 H 0.40 6.89 8.80 -40.82 -0.36 6.53 16 40 H 0.27 6.99 8.29 -40.82 -0.34 6.65 16 41 H 0.15 3.51 6.21 -52.48 -0.33 3.18 16 42 H 0.13 2.30 7.64 -52.49 -0.40 1.90 16 43 H 0.14 2.05 6.25 -52.49 -0.33 1.73 16 44 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 376.20 15.07 5.67 5.67 Total: -1.00 -33.30 376.20 -9.67 -42.97 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -5.37 Total: 12.94 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -5.62 Total: -5.91 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: 0.54 Total: -43.38 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: 0.14 Total: -26.10 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.30 -9.67 -42.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009742513.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.222 kcal (2) G-P(sol) polarization free energy of solvation -33.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 21.60 seconds