Wall clock time and date at job start Tue Mar 31 2020 05:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00152 * 2 1 4 4 H 1.48505 * 109.46851 * 270.00049 * 3 2 1 5 5 H 1.48501 * 109.47231 * 30.00159 * 3 2 1 6 6 H 1.48504 * 109.47195 * 150.00496 * 3 2 1 7 7 C 1.37882 * 119.99724 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00170 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99715 * 179.97438 * 7 2 1 10 10 S 1.81002 * 109.46741 * 179.97438 * 9 7 2 11 11 C 1.76199 * 99.99618 * 180.02562 * 10 9 7 12 12 N 1.31550 * 126.39582 * 0.03987 * 11 10 9 13 13 N 1.28501 * 110.12716 * 179.71543 * 12 11 10 14 14 C 1.31317 * 110.00255 * 0.41870 * 13 12 11 15 15 C 1.47745 * 126.47543 * 179.85617 * 14 13 12 16 16 C 1.40047 * 120.92704 * 344.68574 * 15 14 13 17 17 C 1.37889 * 118.98801 * 179.74867 * 16 15 14 18 18 N 1.31975 * 120.90255 * 0.25376 * 17 16 15 19 19 C 1.31976 * 122.07085 * 359.97438 * 18 17 16 20 20 C 1.37885 * 120.90667 * 0.02562 * 19 18 17 21 21 N 1.36712 * 126.38969 * 180.02562 * 11 10 9 22 22 C 1.40174 * 127.19713 * 0.05213 * 21 11 10 23 23 C 1.38836 * 120.06492 * 114.70277 * 22 21 11 24 24 C 1.38124 * 119.93487 * 179.76362 * 23 22 21 25 25 C 1.38280 * 120.06167 * 0.48971 * 24 23 22 26 26 C 1.38284 * 120.13258 * 359.76149 * 25 24 23 27 27 C 1.38112 * 120.06837 * 0.02562 * 26 25 24 28 28 H 0.96998 * 119.99702 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46894 * 60.00419 * 9 7 2 30 30 H 1.08991 * 109.47294 * 299.99835 * 9 7 2 31 31 H 1.08002 * 120.51125 * 0.02997 * 16 15 14 32 32 H 1.07990 * 119.54942 * 180.23338 * 17 16 15 33 33 H 1.07997 * 119.54391 * 179.97438 * 19 18 17 34 34 H 1.08001 * 120.50389 * 179.97438 * 20 19 18 35 35 H 1.08001 * 120.03236 * 359.97438 * 23 22 21 36 36 H 1.07995 * 119.96743 * 180.22854 * 24 23 22 37 37 H 1.07996 * 119.93269 * 179.74068 * 25 24 23 38 38 H 1.08004 * 119.96244 * 179.97438 * 26 25 24 39 39 H 1.08001 * 120.03343 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 16 4.1147 -2.9007 -0.0010 11 6 5.8527 -2.6107 -0.0009 12 7 6.4484 -1.4378 -0.0003 13 7 7.7244 -1.5899 0.0055 14 6 8.0244 -2.8683 -0.0001 15 6 9.3817 -3.4520 0.0007 16 6 10.5015 -2.6703 -0.3095 17 6 11.7502 -3.2549 -0.2916 18 7 11.8965 -4.5320 0.0073 19 6 10.8681 -5.3051 0.3012 20 6 9.5838 -4.8035 0.3072 21 7 6.8338 -3.5628 -0.0013 22 6 6.6644 -4.9543 -0.0028 23 6 7.0795 -5.7043 -1.0950 24 6 6.9157 -7.0758 -1.0916 25 6 6.3298 -7.7007 -0.0061 26 6 5.9106 -6.9557 1.0809 27 6 6.0757 -5.5845 1.0851 28 1 -0.4849 0.8401 0.0004 29 1 3.8752 -0.6805 0.8889 30 1 3.8745 -0.6802 -0.8911 31 1 10.3893 -1.6245 -0.5546 32 1 12.6203 -2.6596 -0.5257 33 1 11.0348 -6.3452 0.5394 34 1 8.7469 -5.4422 0.5483 35 1 7.5331 -5.2162 -1.9449 36 1 7.2417 -7.6601 -1.9392 37 1 6.1989 -8.7727 -0.0074 38 1 5.4529 -7.4466 1.9271 39 1 5.7478 -5.0032 1.9342 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012543716.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:46 Heat of formation + Delta-G solvation = 148.340818 kcal Electronic energy + Delta-G solvation = -25356.166284 eV Core-core repulsion = 21777.636397 eV Total energy + Delta-G solvation = -3578.529887 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.090 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.97044 -40.20278 -39.56171 -35.08272 -33.63757 -33.16868 -31.62015 -31.33304 -30.08910 -29.98488 -29.33538 -24.97694 -24.13661 -23.47641 -23.08385 -22.77029 -21.86288 -21.00127 -18.90624 -17.19257 -17.13627 -16.67755 -16.60390 -16.44751 -16.07112 -15.88320 -14.95416 -14.68916 -14.40134 -14.17534 -14.08237 -14.00891 -13.86791 -13.58607 -13.09473 -12.90338 -12.53374 -12.26930 -11.98371 -11.76562 -11.54758 -11.09789 -10.99648 -10.78823 -10.73029 -10.56923 -10.30192 -9.90610 -9.84343 -9.53121 -9.43507 -9.35219 -9.32940 -9.04349 -8.78214 -7.15475 -6.28492 -4.34434 0.36537 0.71566 0.82232 0.95398 1.45287 1.88683 2.44140 2.83903 3.05984 3.24242 3.25527 3.32735 3.39155 3.58674 3.83484 4.15387 4.27857 4.39820 4.48618 4.51103 4.68261 4.71489 4.81931 4.95655 5.02194 5.04698 5.07072 5.25092 5.30944 5.35110 5.51676 5.54244 5.59200 5.83373 5.93062 5.99598 6.02651 6.06992 6.31880 6.34714 6.57278 6.60600 6.83550 7.25972 7.64482 8.13198 8.59187 8.66941 9.26474 10.82378 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.013724 B = 0.003583 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.707094 B = 7812.500075 C = 9583.659323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.089 3.911 3 Si 0.874 3.126 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.258 1.258 7 C -0.528 4.528 8 H 0.084 0.916 9 C 0.029 3.971 10 S 0.006 5.994 11 C 0.191 3.809 12 N -0.290 5.290 13 N -0.251 5.251 14 C 0.193 3.807 15 C 0.044 3.956 16 C -0.135 4.135 17 C 0.103 3.897 18 N -0.483 5.483 19 C 0.104 3.896 20 C -0.164 4.164 21 N -0.422 5.422 22 C 0.111 3.889 23 C -0.100 4.100 24 C -0.108 4.108 25 C -0.104 4.104 26 C -0.104 4.104 27 C -0.096 4.096 28 H 0.270 0.730 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.148 0.852 32 H 0.163 0.837 33 H 0.160 0.840 34 H 0.139 0.861 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.137 0.863 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.302 -16.143 0.061 25.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.117 4.117 3 Si 0.699 3.301 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.182 1.182 7 C -0.567 4.567 8 H 0.102 0.898 9 C -0.120 4.120 10 S 0.237 5.763 11 C -0.180 4.180 12 N -0.135 5.135 13 N -0.091 5.091 14 C -0.072 4.072 15 C 0.033 3.967 16 C -0.156 4.156 17 C -0.054 4.054 18 N -0.192 5.192 19 C -0.052 4.052 20 C -0.186 4.186 21 N -0.114 5.114 22 C 0.020 3.980 23 C -0.119 4.119 24 C -0.126 4.126 25 C -0.122 4.122 26 C -0.122 4.122 27 C -0.115 4.115 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.166 0.834 32 H 0.180 0.820 33 H 0.177 0.823 34 H 0.157 0.843 35 H 0.146 0.854 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.155 0.845 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 19.471 -15.824 0.071 25.090 hybrid contribution -0.179 1.212 -0.049 1.226 sum 19.292 -14.613 0.022 24.201 Atomic orbital electron populations 1.69846 1.06196 1.27689 1.48509 1.24759 0.94719 0.98816 0.93444 0.86841 0.80749 0.83133 0.79344 1.19599 1.20678 1.18166 1.20329 0.86226 0.95547 1.54638 0.89769 1.21763 1.00871 0.87572 1.01757 1.85821 0.82002 1.18549 1.89953 1.27962 0.99718 0.86686 1.03592 1.74903 0.98798 1.18535 1.21274 1.74261 1.07452 1.12204 1.15218 1.22710 0.86555 0.88646 1.09252 1.17768 0.87960 0.93167 0.97811 1.22254 0.92021 1.01886 0.99485 1.22734 0.96456 0.91036 0.95156 1.67672 1.34862 1.06006 1.10683 1.22616 0.87398 0.99879 0.95303 1.22472 0.99884 0.94818 1.01439 1.43768 1.05350 1.05203 1.57036 1.17566 1.04325 0.79668 0.96394 1.21178 0.99756 0.94524 0.96476 1.21066 0.99213 0.93320 0.99024 1.21363 0.96959 1.00582 0.93284 1.21118 0.99252 0.92684 0.99160 1.21276 0.97696 0.95397 0.97172 0.91945 0.92777 0.93263 0.83387 0.81990 0.82322 0.84321 0.85376 0.84758 0.84973 0.84548 0.84710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.07 13.96 55.43 0.77 -25.30 16 2 C 0.09 2.49 5.47 -17.82 -0.10 2.39 16 3 Si 0.87 21.16 27.47 -169.99 -4.67 16.50 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 7 C -0.53 -14.51 9.68 -34.44 -0.33 -14.85 16 8 H 0.08 2.47 7.95 -52.49 -0.42 2.05 16 9 C 0.03 0.70 4.06 36.01 0.15 0.84 16 10 S 0.01 0.12 21.89 -107.50 -2.35 -2.24 16 11 C 0.19 3.73 8.01 -87.95 -0.70 3.02 16 12 N -0.29 -6.20 11.59 30.76 0.36 -5.84 16 13 N -0.25 -4.81 12.06 32.63 0.39 -4.42 16 14 C 0.19 3.13 7.71 -153.52 -1.18 1.95 16 15 C 0.04 0.56 5.91 -104.65 -0.62 -0.06 16 16 C -0.13 -1.50 9.80 -39.03 -0.38 -1.88 16 17 C 0.10 0.99 11.17 -17.62 -0.20 0.79 16 18 N -0.48 -5.10 10.35 -13.37 -0.14 -5.24 16 19 C 0.10 0.98 11.17 -17.62 -0.20 0.79 16 20 C -0.16 -1.75 8.62 -39.03 -0.34 -2.08 16 21 N -0.42 -6.83 2.86 -58.15 -0.17 -6.99 16 22 C 0.11 1.43 3.47 -83.60 -0.29 1.14 16 23 C -0.10 -1.05 8.06 -39.40 -0.32 -1.37 16 24 C -0.11 -0.84 10.04 -39.61 -0.40 -1.23 16 25 C -0.10 -0.73 10.04 -39.55 -0.40 -1.13 16 26 C -0.10 -0.86 10.04 -39.61 -0.40 -1.26 16 27 C -0.10 -1.09 9.85 -39.41 -0.39 -1.47 16 28 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.05 1.33 7.20 -51.91 -0.37 0.96 16 30 H 0.05 1.21 7.57 -51.92 -0.39 0.81 16 31 H 0.15 1.58 8.02 -52.49 -0.42 1.16 16 32 H 0.16 1.07 8.06 -52.49 -0.42 0.64 16 33 H 0.16 1.03 8.06 -52.49 -0.42 0.60 16 34 H 0.14 1.40 4.85 -52.49 -0.25 1.15 16 35 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 36 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 37 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 38 H 0.14 0.83 8.06 -52.48 -0.42 0.40 16 39 H 0.14 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 354.34 15.07 5.34 5.34 Total: -1.00 -32.78 354.34 -10.54 -43.33 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -3.99 Total: -0.72 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -6.09 Total: -14.42 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: 1.22 Total: -47.79 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.50 kcal Atomic # 16 Polarization: 0.12 SS G_CDS: -2.35 Total: -2.24 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.78 -10.54 -43.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012543716.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.668 kcal (2) G-P(sol) polarization free energy of solvation -32.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds