Wall clock time and date at job start Tue Mar 31 2020 05:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99568 * 2 1 4 4 H 1.48500 * 109.47103 * 270.00035 * 3 2 1 5 5 H 1.48497 * 109.47498 * 30.00140 * 3 2 1 6 6 H 1.48500 * 109.47063 * 150.00337 * 3 2 1 7 7 C 1.37869 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00108 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00031 * 359.97438 * 7 2 1 10 10 S 1.81002 * 109.47349 * 180.02562 * 9 7 2 11 11 C 1.76199 * 100.00182 * 180.02562 * 10 9 7 12 12 N 1.31051 * 125.07666 * 359.69722 * 11 10 9 13 13 C 1.35875 * 109.61657 * 179.82739 * 12 11 10 14 14 C 1.39723 * 133.37502 * 180.12271 * 13 12 11 15 15 C 1.37687 * 119.78232 * 180.35432 * 14 13 12 16 16 C 1.38700 * 120.49510 * 0.02562 * 15 14 13 17 17 C 1.37981 * 120.43098 * 359.97438 * 16 15 14 18 18 C 1.38650 * 119.85299 * 0.02562 * 17 16 15 19 19 N 1.36639 * 125.07840 * 179.97438 * 11 10 9 20 20 C 1.46502 * 126.38005 * 359.96891 * 19 11 10 21 21 C 1.53000 * 109.47090 * 90.02336 * 20 19 11 22 22 C 1.50700 * 109.46595 * 179.97438 * 21 20 19 23 23 C 1.38244 * 120.00134 * 269.72541 * 22 21 20 24 24 C 1.38232 * 119.99796 * 179.77475 * 23 22 21 25 25 C 1.38235 * 120.00012 * 0.49779 * 24 23 22 26 26 C 1.38230 * 120.00351 * 359.75592 * 25 24 23 27 27 C 1.38235 * 119.99791 * 359.97438 * 26 25 24 28 28 H 0.96995 * 120.00077 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.46867 * 60.00355 * 9 7 2 30 30 H 1.09000 * 109.47235 * 300.00394 * 9 7 2 31 31 H 1.08000 * 120.10955 * 0.37741 * 14 13 12 32 32 H 1.08004 * 119.75696 * 180.02562 * 15 14 13 33 33 H 1.08001 * 119.78766 * 179.97438 * 16 15 14 34 34 H 1.08004 * 120.06958 * 180.02562 * 17 16 15 35 35 H 1.09004 * 109.46537 * 210.02218 * 20 19 11 36 36 H 1.08995 * 109.47468 * 330.01758 * 20 19 11 37 37 H 1.08992 * 109.46965 * 299.99631 * 21 20 19 38 38 H 1.08998 * 109.46973 * 60.00213 * 21 20 19 39 39 H 1.07991 * 119.99813 * 359.97438 * 23 22 21 40 40 H 1.08002 * 120.00149 * 180.23217 * 24 23 22 41 41 H 1.08002 * 119.99877 * 179.72673 * 25 24 23 42 42 H 1.07997 * 120.00413 * 179.97438 * 26 25 24 43 43 H 1.08003 * 120.00396 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 16 2.4274 -3.8749 -0.0005 11 6 1.3074 -5.2351 -0.0013 12 7 0.0007 -5.1347 0.0039 13 6 -0.5521 -6.3759 -0.0024 14 6 -1.8703 -6.8392 -0.0030 15 6 -2.1193 -8.1934 -0.0031 16 6 -1.0711 -9.1017 -0.0020 17 6 0.2362 -8.6603 -0.0013 18 6 0.5054 -7.3002 -0.0013 19 7 1.6714 -6.5520 -0.0021 20 6 3.0398 -7.0753 -0.0030 21 6 3.5167 -7.2587 1.4392 22 6 4.9241 -7.7975 1.4380 23 6 5.1415 -9.1627 1.4427 24 6 6.4325 -9.6570 1.4370 25 6 7.5060 -8.7861 1.4370 26 6 7.2886 -7.4210 1.4376 27 6 5.9977 -6.9267 1.4377 28 1 -0.4850 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8904 30 1 0.6248 -2.5571 0.8896 31 1 -2.6912 -6.1375 -0.0038 32 1 -3.1383 -8.5511 -0.0040 33 1 -1.2794 -10.1614 -0.0016 34 1 1.0480 -9.3727 -0.0009 35 1 3.0610 -8.0360 -0.5177 36 1 3.6969 -6.3735 -0.5166 37 1 3.4955 -6.2981 1.9537 38 1 2.8597 -7.9606 1.9526 39 1 4.3029 -9.8430 1.4476 40 1 6.6024 -10.7235 1.4368 41 1 8.5146 -9.1722 1.4370 42 1 8.1273 -6.7406 1.4381 43 1 5.8277 -5.8601 1.4386 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012549698.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:40 Heat of formation + Delta-G solvation = 83.045117 kcal Electronic energy + Delta-G solvation = -25073.374437 eV Core-core repulsion = 21595.553460 eV Total energy + Delta-G solvation = -3477.820977 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.115 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.68616 -39.48997 -37.09714 -35.18843 -33.21114 -32.54850 -31.09060 -30.25533 -29.22326 -28.53872 -28.16817 -24.29956 -23.66346 -22.83769 -22.72274 -21.78105 -21.26720 -20.36526 -17.45927 -17.19039 -16.89601 -16.40171 -16.06751 -15.54290 -15.48995 -15.07669 -14.83610 -14.28935 -14.08564 -14.03336 -13.62698 -13.42738 -13.35700 -13.06752 -12.91004 -12.44948 -12.43684 -12.38876 -11.92520 -11.59057 -11.48302 -11.40648 -11.13962 -11.04913 -10.92024 -10.85104 -10.51727 -10.19698 -9.69743 -9.56506 -9.28893 -9.12456 -8.94815 -8.77754 -8.47825 -7.93595 -6.82381 -6.21464 -4.29847 1.07967 1.15548 1.19852 1.69969 1.83811 2.89398 2.99314 3.23882 3.29769 3.31581 3.46503 3.58328 4.10261 4.31366 4.49326 4.52889 4.69127 4.74400 4.79838 4.93302 4.94707 5.06008 5.12562 5.14933 5.18282 5.26301 5.31024 5.45738 5.50035 5.60712 5.70632 5.72430 5.85853 5.91050 5.94530 6.24984 6.26706 6.31694 6.43031 6.59321 6.64749 6.76877 6.79543 7.06538 7.11808 7.18623 7.23313 7.66145 7.91491 8.14552 8.70988 9.33749 10.88820 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.007620 B = 0.003794 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3673.611086 B = 7378.269931 C =10930.988022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.072 3.928 3 Si 0.907 3.093 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.527 4.527 8 H 0.067 0.933 9 C 0.082 3.918 10 S -0.062 6.062 11 C 0.284 3.716 12 N -0.492 5.492 13 C 0.063 3.937 14 C -0.069 4.069 15 C -0.132 4.132 16 C -0.116 4.116 17 C -0.110 4.110 18 C 0.046 3.954 19 N -0.484 5.484 20 C 0.122 3.878 21 C -0.098 4.098 22 C -0.079 4.079 23 C -0.116 4.116 24 C -0.121 4.121 25 C -0.124 4.124 26 C -0.117 4.117 27 C -0.110 4.110 28 H 0.267 0.733 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.089 -20.916 1.877 22.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.134 4.134 3 Si 0.733 3.267 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.567 4.567 8 H 0.085 0.915 9 C -0.065 4.065 10 S 0.171 5.829 11 C -0.088 4.088 12 N -0.215 5.215 13 C -0.058 4.058 14 C -0.090 4.090 15 C -0.153 4.153 16 C -0.136 4.136 17 C -0.131 4.131 18 C -0.064 4.064 19 N -0.177 5.177 20 C 0.000 4.000 21 C -0.137 4.137 22 C -0.080 4.080 23 C -0.134 4.134 24 C -0.139 4.139 25 C -0.142 4.142 26 C -0.135 4.135 27 C -0.128 4.128 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.133 0.867 35 H 0.106 0.894 36 H 0.116 0.884 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.141 0.859 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.802 -20.025 1.877 21.954 hybrid contribution -0.465 0.062 -0.004 0.469 sum 8.337 -19.963 1.873 21.715 Atomic orbital electron populations 1.69982 1.06101 1.27483 1.48212 1.24932 0.94956 0.99148 0.94381 0.86354 0.79691 0.82211 0.78402 1.20265 1.20859 1.19528 1.20600 0.93254 0.88672 1.54219 0.91512 1.21322 0.93662 0.88934 1.02623 1.85470 1.11777 0.95142 1.90506 1.26157 0.95115 0.87992 0.99572 1.71243 1.03632 1.22256 1.24381 1.19212 0.93719 0.88954 1.03909 1.20291 0.93558 0.95343 0.99793 1.20795 0.98978 0.92314 1.03191 1.20744 0.91522 0.99250 1.02108 1.19818 0.97179 0.90884 1.05220 1.18924 0.86361 0.94024 1.07125 1.45339 1.05438 1.04703 1.62241 1.21732 0.79916 1.00886 0.97508 1.20983 0.92875 1.03124 0.96675 1.19703 0.94560 0.93517 1.00198 1.21063 0.97120 0.94679 1.00544 1.21121 0.92660 0.99652 1.00485 1.21169 0.98908 0.93617 1.00535 1.21191 0.97007 0.95500 0.99835 1.21223 0.92181 1.00193 0.99179 0.92293 0.92862 0.92828 0.85468 0.85749 0.85823 0.86664 0.89362 0.88351 0.89377 0.90394 0.86173 0.86164 0.86217 0.85893 0.85358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.62 13.29 55.43 0.74 -24.89 16 2 C 0.07 1.97 5.46 -17.82 -0.10 1.87 16 3 Si 0.91 20.85 29.54 -169.99 -5.02 15.83 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.53 -14.41 9.13 -34.44 -0.31 -14.72 16 8 H 0.07 1.76 7.71 -52.49 -0.40 1.36 16 9 C 0.08 2.14 4.91 36.01 0.18 2.31 16 10 S -0.06 -1.29 21.46 -107.50 -2.31 -3.59 16 11 C 0.28 5.77 7.93 -88.44 -0.70 5.07 16 12 N -0.49 -10.96 10.57 -10.90 -0.12 -11.08 16 13 C 0.06 1.21 7.22 -84.69 -0.61 0.60 16 14 C -0.07 -1.11 10.10 -39.23 -0.40 -1.50 16 15 C -0.13 -1.66 10.01 -39.61 -0.40 -2.06 16 16 C -0.12 -1.35 10.03 -39.51 -0.40 -1.75 16 17 C -0.11 -1.43 10.04 -39.52 -0.40 -1.83 16 18 C 0.05 0.76 6.87 -83.84 -0.58 0.18 16 19 N -0.48 -8.06 2.83 -114.33 -0.32 -8.39 16 20 C 0.12 1.54 5.92 -4.04 -0.02 1.52 16 21 C -0.10 -1.13 5.67 -27.88 -0.16 -1.29 16 22 C -0.08 -0.83 5.13 -104.62 -0.54 -1.36 16 23 C -0.12 -1.07 9.70 -39.58 -0.38 -1.46 16 24 C -0.12 -1.03 10.05 -39.58 -0.40 -1.42 16 25 C -0.12 -1.06 10.05 -39.59 -0.40 -1.45 16 26 C -0.12 -1.09 10.05 -39.59 -0.40 -1.48 16 27 C -0.11 -1.15 9.70 -39.58 -0.38 -1.53 16 28 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.05 1.50 8.14 -51.91 -0.42 1.08 16 30 H 0.05 1.51 8.14 -51.92 -0.42 1.09 16 31 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 32 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 33 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.10 1.26 7.68 -51.93 -0.40 0.86 16 37 H 0.09 1.15 8.09 -51.93 -0.42 0.73 16 38 H 0.08 0.87 8.08 -51.93 -0.42 0.46 16 39 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 40 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 43 H 0.13 1.32 8.06 -52.48 -0.42 0.89 16 LS Contribution 383.79 15.07 5.78 5.78 Total: -1.00 -31.46 383.79 -13.49 -44.95 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -5.85 Total: 1.70 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -6.39 Total: -20.32 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 0.30 Total: -44.35 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: -1.29 SS G_CDS: -2.31 Total: -3.59 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.46 -13.49 -44.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012549698.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.990 kcal (2) G-P(sol) polarization free energy of solvation -31.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds