Wall clock time and date at job start Tue Mar 31 2020 05:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31363 * 1 3 3 Si 1.86802 * 120.00121 * 2 1 4 4 H 1.48495 * 109.47205 * 270.00337 * 3 2 1 5 5 H 1.48500 * 109.46987 * 30.00855 * 3 2 1 6 6 H 1.48500 * 109.46917 * 150.00182 * 3 2 1 7 7 C 1.38882 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00293 * 179.97438 * 7 2 1 9 9 O 1.34801 * 119.99832 * 359.97438 * 7 2 1 10 10 C 1.34702 * 117.00204 * 180.02562 * 9 7 2 11 11 O 1.21485 * 119.99596 * 359.97438 * 10 9 7 12 12 C 1.47830 * 120.00450 * 179.97438 * 10 9 7 13 13 C 1.39694 * 119.92820 * 359.97438 * 12 10 9 14 14 C 1.37824 * 119.87769 * 180.09121 * 13 12 10 15 15 C 1.39454 * 119.87751 * 359.97438 * 14 13 12 16 16 C 1.39359 * 120.47251 * 359.97438 * 15 14 13 17 17 C 1.38169 * 119.65147 * 359.90159 * 16 15 14 18 18 C 1.50619 * 120.72992 * 180.42232 * 16 15 14 19 19 C 1.52895 * 110.19420 * 338.49802 * 18 16 15 20 20 H 1.09003 * 109.50674 * 290.10828 * 19 18 16 21 21 C 1.50702 * 109.50086 * 170.02956 * 19 18 16 22 22 C 1.38235 * 120.00043 * 279.72657 * 21 19 18 23 23 C 1.38237 * 119.99843 * 179.79439 * 22 21 19 24 24 C 1.38231 * 119.99964 * 0.45656 * 23 22 21 25 25 C 1.38228 * 120.00310 * 359.77287 * 24 23 22 26 26 C 1.38238 * 119.99882 * 99.99967 * 21 19 18 27 27 O 1.45729 * 109.27816 * 50.04946 * 19 18 16 28 28 C 1.35719 * 114.43246 * 297.16092 * 27 19 18 29 29 O 1.21450 * 121.44668 * 221.67517 * 28 27 19 30 30 H 0.97003 * 119.99998 * 359.97438 * 1 2 3 31 31 H 1.07991 * 120.05772 * 0.11509 * 13 12 10 32 32 H 1.08003 * 120.05911 * 179.97438 * 14 13 12 33 33 H 1.08003 * 120.03088 * 180.02562 * 17 16 15 34 34 H 1.09002 * 109.32650 * 218.31877 * 18 16 15 35 35 H 1.09005 * 109.32314 * 98.67594 * 18 16 15 36 36 H 1.07994 * 120.00053 * 359.97438 * 22 21 19 37 37 H 1.08003 * 119.99998 * 180.25165 * 23 22 21 38 38 H 1.07998 * 119.99809 * 179.79735 * 24 23 22 39 39 H 1.07997 * 120.00400 * 180.02562 * 25 24 23 40 40 H 1.08000 * 120.00423 * 359.97438 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 2.4951 2.0465 -1.4000 5 1 1.4452 2.6526 0.7002 6 1 3.5452 1.4401 0.7000 7 6 2.0080 -1.2028 -0.0005 8 1 3.0880 -1.2028 -0.0010 9 8 1.3340 -2.3701 -0.0005 10 6 2.0676 -3.4999 -0.0005 11 8 3.2808 -3.4363 -0.0010 12 6 1.3965 -4.8171 0.0000 13 6 0.0014 -4.8885 0.0011 14 6 -0.6232 -6.1170 0.0036 15 6 0.1398 -7.2843 0.0044 16 6 1.5319 -7.2186 0.0022 17 6 2.1581 -5.9870 -0.0028 18 6 2.3617 -8.4756 -0.0064 19 6 1.5392 -9.6546 0.5143 20 1 1.3629 -9.5316 1.5830 21 6 2.2911 -10.9381 0.2729 22 6 2.2693 -11.5272 -0.9775 23 6 2.9624 -12.7023 -1.2001 24 6 3.6696 -13.2933 -0.1699 25 6 3.6875 -12.7069 1.0817 26 6 2.9979 -11.5294 1.3032 27 8 0.2628 -9.6981 -0.1875 28 6 -0.5246 -8.6107 0.0116 29 8 -1.7214 -8.7188 0.1877 30 1 -0.4850 0.8401 0.0004 31 1 -0.5866 -3.9826 -0.0003 32 1 -1.7017 -6.1757 0.0048 33 1 3.2365 -5.9289 -0.0049 34 1 3.2351 -8.3357 0.6306 35 1 2.6880 -8.6853 -1.0251 36 1 1.7131 -11.0678 -1.7812 37 1 2.9487 -13.1604 -2.1781 38 1 4.2084 -14.2132 -0.3430 39 1 4.2404 -13.1684 1.8865 40 1 3.0117 -11.0714 2.2812 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012785086.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:33 Heat of formation + Delta-G solvation = -106.662149 kcal Electronic energy + Delta-G solvation = -27275.798354 eV Core-core repulsion = 23178.872335 eV Total energy + Delta-G solvation = -4096.926018 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.103 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.16014 -39.59881 -39.25802 -38.01272 -37.34801 -35.31020 -33.63956 -32.42671 -31.97459 -31.25895 -31.17734 -28.48907 -26.19223 -24.86489 -24.49116 -23.02915 -21.98050 -21.78655 -21.13840 -19.48118 -18.22105 -17.90579 -17.57110 -17.04028 -16.65767 -16.02101 -15.74283 -15.20369 -15.06193 -14.78166 -14.71053 -14.53648 -14.33653 -14.10771 -13.76259 -13.72941 -13.67044 -13.18284 -13.03132 -12.86377 -12.42911 -12.21963 -11.94566 -11.75409 -11.53509 -11.42912 -11.32486 -11.07684 -10.88305 -10.61007 -10.53721 -10.20169 -10.01940 -9.27421 -9.25893 -9.15191 -8.97083 -8.78448 -8.74547 -6.63372 -4.23302 0.37725 0.89703 1.06626 1.35769 2.05730 2.84902 3.04567 3.08857 3.15078 3.33164 3.42828 3.73787 3.94794 4.04011 4.13083 4.27194 4.44092 4.51569 4.64784 4.72257 4.75613 4.81611 4.84310 4.98904 5.14840 5.19035 5.28522 5.36043 5.44934 5.51339 5.57426 5.69765 5.73804 5.92768 6.04338 6.08332 6.15800 6.17412 6.26846 6.47355 6.61519 6.73671 6.79587 6.86957 7.20619 7.33265 7.74212 8.52354 8.84615 9.63275 10.53397 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.021896 B = 0.002312 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.491293 B =12110.341669 C =13084.346049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.042 3.958 3 Si 0.948 3.052 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.371 4.371 8 H 0.101 0.899 9 O -0.198 6.198 10 C 0.419 3.581 11 O -0.551 6.551 12 C -0.041 4.041 13 C -0.088 4.088 14 C -0.058 4.058 15 C -0.172 4.172 16 C -0.054 4.054 17 C -0.081 4.081 18 C -0.106 4.106 19 C 0.146 3.854 20 H 0.091 0.909 21 C -0.089 4.089 22 C -0.089 4.089 23 C -0.122 4.122 24 C -0.114 4.114 25 C -0.121 4.121 26 C -0.102 4.102 27 O -0.355 6.355 28 C 0.532 3.468 29 O -0.450 6.450 30 H 0.274 0.726 31 H 0.152 0.848 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.639 -22.162 0.731 22.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.164 4.164 3 Si 0.772 3.228 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.446 4.446 8 H 0.118 0.882 9 O -0.104 6.104 10 C 0.267 3.733 11 O -0.450 6.450 12 C -0.043 4.043 13 C -0.106 4.106 14 C -0.076 4.076 15 C -0.174 4.174 16 C -0.055 4.055 17 C -0.100 4.100 18 C -0.143 4.143 19 C 0.091 3.909 20 H 0.109 0.891 21 C -0.089 4.089 22 C -0.107 4.107 23 C -0.140 4.140 24 C -0.132 4.132 25 C -0.139 4.139 26 C -0.121 4.121 27 O -0.275 6.275 28 C 0.375 3.625 29 O -0.332 6.332 30 H 0.084 0.916 31 H 0.170 0.830 32 H 0.159 0.841 33 H 0.161 0.839 34 H 0.123 0.877 35 H 0.117 0.883 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.115 -22.170 0.713 22.560 hybrid contribution 0.434 0.972 -0.026 1.065 sum 4.549 -21.198 0.688 21.691 Atomic orbital electron populations 1.69944 1.06198 1.28381 1.43985 1.25463 0.95903 0.99173 0.95896 0.85597 0.79115 0.79146 0.78973 1.19622 1.20099 1.18858 1.21404 0.92715 0.79582 1.50945 0.88170 1.83853 1.39370 1.13343 1.73809 1.20656 0.85925 0.85322 0.81350 1.90633 1.14876 1.87649 1.51845 1.19672 0.93644 0.92005 0.98960 1.21691 0.93870 0.98588 0.96488 1.21198 1.00562 0.90495 0.95341 1.20012 0.93657 0.93791 1.09983 1.19700 0.92131 0.94747 0.98879 1.21076 1.00944 0.89583 0.98352 1.21139 0.98345 0.90209 1.04567 1.21560 0.80086 0.93171 0.96051 0.89079 1.19406 0.99169 0.95583 0.94792 1.21057 0.97592 0.95398 0.96640 1.21198 0.97511 0.95886 0.99385 1.21239 0.98866 0.99823 0.93234 1.21111 0.99699 0.95696 0.97395 1.20968 0.97217 0.95548 0.98319 1.86977 1.30182 1.43095 1.67271 1.21013 0.85830 0.83727 0.71963 1.90800 1.14444 1.87300 1.40642 0.91562 0.82980 0.84087 0.83858 0.87692 0.88270 0.85323 0.85737 0.85926 0.85665 0.85549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.57 13.67 55.49 0.76 -22.81 16 2 C 0.04 1.12 5.50 -17.51 -0.10 1.02 16 3 Si 0.95 20.23 29.55 -169.99 -5.02 15.20 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 6 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.37 -10.48 9.65 30.97 0.30 -10.18 16 8 H 0.10 2.84 6.86 -52.49 -0.36 2.48 16 9 O -0.20 -5.41 8.97 -21.41 -0.19 -5.61 16 10 C 0.42 10.18 7.84 34.65 0.27 10.45 16 11 O -0.55 -14.38 15.57 -19.26 -0.30 -14.68 16 12 C -0.04 -0.79 5.88 -104.92 -0.62 -1.41 16 13 C -0.09 -1.53 9.61 -39.19 -0.38 -1.91 16 14 C -0.06 -0.88 9.62 -39.28 -0.38 -1.25 16 15 C -0.17 -2.50 5.83 -104.86 -0.61 -3.11 16 16 C -0.05 -0.72 5.79 -104.27 -0.60 -1.33 16 17 C -0.08 -1.28 9.26 -39.10 -0.36 -1.65 16 18 C -0.11 -1.04 5.32 -27.98 -0.15 -1.19 16 19 C 0.15 1.46 2.94 -27.94 -0.08 1.38 16 20 H 0.09 0.81 8.01 -51.93 -0.42 0.40 16 21 C -0.09 -0.81 4.97 -104.62 -0.52 -1.33 16 22 C -0.09 -0.80 9.30 -39.58 -0.37 -1.17 16 23 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 24 C -0.11 -0.79 10.05 -39.59 -0.40 -1.18 16 25 C -0.12 -0.84 10.05 -39.58 -0.40 -1.24 16 26 C -0.10 -0.79 9.67 -39.58 -0.38 -1.17 16 27 O -0.36 -4.62 9.64 -43.34 -0.42 -5.04 16 28 C 0.53 7.83 7.84 34.90 0.27 8.11 16 29 O -0.45 -7.70 17.38 -19.07 -0.33 -8.04 16 30 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.15 2.77 7.59 -52.49 -0.40 2.37 16 32 H 0.14 1.94 7.75 -52.48 -0.41 1.53 16 33 H 0.14 2.17 7.63 -52.48 -0.40 1.77 16 34 H 0.10 0.84 8.13 -51.93 -0.42 0.42 16 35 H 0.10 0.91 8.05 -51.93 -0.42 0.49 16 36 H 0.13 1.15 7.77 -52.49 -0.41 0.74 16 37 H 0.12 0.72 8.06 -52.48 -0.42 0.29 16 38 H 0.12 0.59 8.06 -52.49 -0.42 0.16 16 39 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 40 H 0.13 0.74 8.04 -52.49 -0.42 0.32 16 LS Contribution 357.56 15.07 5.39 5.39 Total: -1.00 -32.86 357.56 -9.07 -41.92 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -4.05 Total: 2.13 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -4.89 Total: -8.48 kcal Atomic # 7 Polarization: -23.57 SS G_CDS: 0.76 Total: -22.81 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -1.24 Total: -33.36 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.86 -9.07 -41.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012785086.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.737 kcal (2) G-P(sol) polarization free energy of solvation -32.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds