Wall clock time and date at job start Tue Mar 31 2020 06:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38327 * 120.35324 * 2 1 4 4 C 1.37701 * 120.54395 * 179.79186 * 3 2 1 5 5 C 1.39599 * 121.05035 * 0.30809 * 4 3 2 6 6 C 1.38886 * 117.80949 * 359.76696 * 5 4 3 7 7 C 1.38031 * 120.35404 * 179.97438 * 2 1 3 8 8 S 1.77432 * 108.28546 * 179.59710 * 6 5 4 9 9 C 1.83646 * 96.54656 * 344.71679 * 8 6 5 10 10 H 1.08994 * 111.50327 * 267.14753 * 9 8 6 11 11 C 1.50692 * 110.88606 * 142.94732 * 9 8 6 12 12 O 1.21283 * 120.00105 * 283.63343 * 11 9 8 13 13 N 1.34780 * 120.00232 * 103.63102 * 11 9 8 14 14 C 1.39232 * 120.00501 * 175.70743 * 13 11 9 15 15 C 1.39476 * 119.83681 * 215.01397 * 14 13 11 16 16 C 1.36383 * 120.16928 * 179.75779 * 15 14 13 17 17 C 1.40866 * 119.82577 * 0.51928 * 16 15 14 18 18 C 1.41153 * 120.16039 * 179.71071 * 17 16 15 19 19 H 1.07998 * 120.00221 * 214.79610 * 18 17 16 20 20 C 1.39906 * 120.00072 * 34.81226 * 18 17 16 21 21 N 1.30872 * 119.99754 * 355.55093 * 20 18 17 22 22 Si 1.86801 * 120.00348 * 175.55480 * 20 18 17 23 23 H 1.48500 * 109.46972 * 89.99590 * 22 20 18 24 24 H 1.48495 * 109.47047 * 209.99742 * 22 20 18 25 25 H 1.48500 * 109.46716 * 329.99876 * 22 20 18 26 26 C 1.40866 * 119.67450 * 359.73983 * 17 16 15 27 27 C 1.36377 * 119.82900 * 359.97438 * 26 17 16 28 28 C 1.50875 * 126.83389 * 180.39065 * 5 4 3 29 29 H 1.09001 * 109.47287 * 89.99756 * 1 2 3 30 30 H 1.09001 * 109.47208 * 209.99921 * 1 2 3 31 31 H 1.09004 * 109.47184 * 329.99683 * 1 2 3 32 32 H 1.08005 * 119.73081 * 359.82074 * 3 2 1 33 33 H 1.07994 * 119.47836 * 180.02562 * 4 3 2 34 34 H 1.07998 * 119.91781 * 0.04950 * 7 2 1 35 35 H 0.97002 * 119.99208 * 355.71686 * 13 11 9 36 36 H 1.07996 * 119.91681 * 0.02652 * 15 14 13 37 37 H 1.08001 * 120.08421 * 180.25563 * 16 15 14 38 38 H 0.97000 * 119.99910 * 180.02562 * 21 20 18 39 39 H 1.08002 * 120.08843 * 180.02562 * 26 17 16 40 40 H 1.08002 * 119.91638 * 179.97438 * 27 26 17 41 41 H 1.09001 * 109.28517 * 320.82671 * 28 5 4 42 42 H 1.09001 * 109.28832 * 80.28515 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2060 1.1937 0.0000 4 6 3.5829 1.1982 0.0043 5 6 4.3070 0.0047 0.0023 6 6 3.5927 -1.1864 0.0009 7 6 2.2045 -1.1911 0.0005 8 16 4.7513 -2.5302 -0.0133 9 6 6.2179 -1.5372 -0.4986 10 1 6.3570 -1.5321 -1.5796 11 6 7.4570 -2.0311 0.2024 12 8 7.6415 -1.7608 1.3703 13 7 8.3602 -2.7732 -0.4683 14 6 9.5469 -3.1543 0.1522 15 6 10.7234 -3.2382 -0.5922 16 6 11.8906 -3.6059 0.0098 17 6 11.9037 -3.9120 1.3848 18 6 13.1066 -4.2993 2.0137 19 1 13.0891 -5.0289 2.8098 20 6 14.3214 -3.7378 1.6060 21 7 14.3542 -2.9198 0.5850 22 14 15.8967 -4.1557 2.5190 23 1 16.5257 -5.3498 1.8997 24 1 16.8336 -3.0062 2.4413 25 1 15.5827 -4.4433 3.9417 26 6 10.7104 -3.8302 2.1288 27 6 9.5521 -3.4554 1.5142 28 6 5.8085 -0.1424 0.0147 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 1.6673 2.1298 -0.0029 33 1 4.1112 2.1401 0.0047 34 1 1.6689 -2.1289 0.0001 35 1 8.1835 -3.0418 -1.3835 36 1 10.7110 -3.0071 -1.6471 37 1 12.8017 -3.6665 -0.5671 38 1 15.1966 -2.5308 0.3021 39 1 10.7128 -4.0630 3.1834 40 1 8.6363 -3.3926 2.0832 41 1 6.2503 0.6209 -0.6258 42 1 6.1747 -0.0119 1.0331 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012849950.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:55 Heat of formation + Delta-G solvation = 9.842631 kcal Electronic energy + Delta-G solvation = -24796.066621 eV Core-core repulsion = 21217.352683 eV Total energy + Delta-G solvation = -3578.713938 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.103 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.06202 -39.53170 -37.39919 -35.18232 -34.48596 -33.00737 -31.64610 -31.07646 -29.63777 -29.02510 -27.38420 -25.16805 -23.98639 -23.25841 -21.66776 -21.08332 -20.67950 -19.76972 -17.79930 -17.35723 -16.96863 -16.61018 -15.84772 -15.66830 -15.32246 -15.13442 -14.54713 -14.30010 -14.00101 -13.96421 -13.63003 -13.42771 -12.94219 -12.88551 -12.80616 -12.62196 -12.45269 -12.17337 -12.03243 -11.74575 -11.59358 -11.39464 -11.26929 -11.17693 -11.02293 -10.76244 -10.36196 -10.12503 -9.88337 -9.55525 -9.50747 -9.22838 -8.96266 -8.84043 -7.59970 -7.58029 -6.92181 -6.65492 -4.37916 0.85082 1.03053 1.11617 1.95174 2.57808 3.02891 3.05616 3.08445 3.12489 3.21048 3.34189 3.52197 3.95699 4.18770 4.39669 4.57155 4.59504 4.66437 4.69908 4.88714 5.00665 5.05096 5.25348 5.26771 5.32654 5.45185 5.59322 5.61719 5.69747 5.85094 5.96828 6.08221 6.14966 6.25123 6.40353 6.61193 6.67605 6.85609 7.02594 7.15039 7.25037 7.59922 7.66921 7.79613 8.02186 8.17258 8.27335 8.54122 8.63632 8.89117 8.95151 10.25452 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.037617 B = 0.001971 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.164983 B =14205.892772 C =14322.616529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.074 4.074 3 C -0.120 4.120 4 C -0.089 4.089 5 C -0.102 4.102 6 C -0.080 4.080 7 C -0.088 4.088 8 S -0.098 6.098 9 C -0.080 4.080 10 H 0.121 0.879 11 C 0.518 3.482 12 O -0.510 6.510 13 N -0.639 5.639 14 C -0.002 4.002 15 C -0.117 4.117 16 C -0.142 4.142 17 C 0.101 3.899 18 C -0.459 4.459 19 H 0.077 0.923 20 C 0.069 3.931 21 N -0.810 5.810 22 Si 0.916 3.084 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.263 1.263 26 C -0.205 4.205 27 C -0.083 4.083 28 C -0.078 4.078 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.397 0.603 36 H 0.092 0.908 37 H 0.133 0.867 38 H 0.278 0.722 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.094 0.906 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.978 6.656 -6.258 22.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.076 4.076 3 C -0.141 4.141 4 C -0.109 4.109 5 C -0.108 4.108 6 C -0.192 4.192 7 C -0.112 4.112 8 S 0.146 5.854 9 C -0.212 4.212 10 H 0.139 0.861 11 C 0.301 3.699 12 O -0.386 6.386 13 N -0.282 5.282 14 C -0.094 4.094 15 C -0.137 4.137 16 C -0.162 4.162 17 C 0.099 3.901 18 C -0.490 4.490 19 H 0.095 0.905 20 C -0.146 4.146 21 N -0.438 5.438 22 Si 0.741 3.259 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.187 1.187 26 C -0.225 4.225 27 C -0.103 4.103 28 C -0.116 4.116 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.231 0.769 36 H 0.110 0.890 37 H 0.150 0.850 38 H 0.089 0.911 39 H 0.115 0.885 40 H 0.126 0.874 41 H 0.113 0.887 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -20.686 5.667 -5.326 22.100 hybrid contribution 0.780 1.180 -0.431 1.479 sum -19.906 6.847 -5.757 21.823 Atomic orbital electron populations 1.20765 0.90543 1.03026 1.02510 1.19815 0.96083 0.92557 0.99126 1.20832 0.93660 0.97782 1.01802 1.20786 0.93849 0.96739 0.99538 1.20807 0.94313 0.93458 1.02225 1.22137 0.96645 0.95830 1.04636 1.20252 0.90734 0.98296 1.01879 1.86384 1.00785 1.11176 1.87069 1.24144 0.95061 0.97837 1.04184 0.86135 1.19414 0.83522 0.79541 0.87423 1.90713 1.75872 1.56646 1.15365 1.42905 1.18206 1.50611 1.16476 1.17240 0.84303 1.14228 0.93613 1.20306 0.92063 1.03661 0.97713 1.21197 0.96265 1.03633 0.95091 1.17747 0.92076 0.89051 0.91261 1.19518 0.90754 1.21840 1.16847 0.90528 1.25895 1.00745 0.93551 0.94411 1.69758 1.28094 1.23904 1.22003 0.86182 0.80396 0.78677 0.80661 1.19489 1.20278 1.18688 1.20813 0.93558 1.09833 0.98330 1.20409 0.98074 0.98734 0.93060 1.20850 0.91197 0.94321 1.05245 0.90948 0.91335 0.91280 0.85594 0.85730 0.85548 0.76867 0.88995 0.84952 0.91092 0.88486 0.87394 0.88744 0.86847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.03 36.00 0.36 -0.29 16 2 C -0.07 -0.65 5.88 -104.67 -0.62 -1.27 16 3 C -0.12 -1.04 9.67 -39.74 -0.38 -1.42 16 4 C -0.09 -0.87 9.97 -39.27 -0.39 -1.27 16 5 C -0.10 -1.21 5.98 -103.79 -0.62 -1.83 16 6 C -0.08 -0.99 6.48 -39.12 -0.25 -1.24 16 7 C -0.09 -0.92 9.73 -39.44 -0.38 -1.30 16 8 S -0.10 -1.32 22.54 -107.50 -2.42 -3.75 16 9 C -0.08 -1.04 3.85 -27.28 -0.11 -1.15 16 10 H 0.12 1.22 8.13 -51.93 -0.42 0.79 16 11 C 0.52 8.89 6.83 -10.99 -0.08 8.81 16 12 O -0.51 -10.78 13.32 5.55 0.07 -10.70 16 13 N -0.64 -11.04 5.30 -9.74 -0.05 -11.09 16 14 C 0.00 -0.04 6.31 -83.57 -0.53 -0.56 16 15 C -0.12 -2.62 9.90 -39.79 -0.39 -3.02 16 16 C -0.14 -3.60 8.62 -39.26 -0.34 -3.94 16 17 C 0.10 2.70 5.55 -106.80 -0.59 2.10 16 18 C -0.46 -12.16 9.02 -37.85 -0.34 -12.50 16 19 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 20 C 0.07 1.74 5.42 -17.34 -0.09 1.64 16 21 N -0.81 -20.87 10.60 55.55 0.59 -20.28 16 22 Si 0.92 18.88 29.56 -169.99 -5.03 13.86 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 24 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 25 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 26 C -0.21 -5.19 9.74 -39.26 -0.38 -5.57 16 27 C -0.08 -1.98 8.61 -39.79 -0.34 -2.32 16 28 C -0.08 -0.96 5.83 -27.19 -0.16 -1.12 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 31 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 32 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 33 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 34 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.40 5.35 8.81 -40.82 -0.36 4.99 16 36 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 37 H 0.13 3.46 6.13 -52.49 -0.32 3.14 16 38 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 39 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 40 H 0.11 2.57 6.22 -52.49 -0.33 2.24 16 41 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.11 1.62 6.99 -51.93 -0.36 1.26 16 LS Contribution 365.26 15.07 5.50 5.50 Total: -1.00 -30.46 365.26 -12.11 -42.58 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -5.14 Total: 10.12 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: -5.64 Total: -26.23 kcal Atomic # 7 Polarization: -31.91 SS G_CDS: 0.54 Total: -31.37 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.07 Total: -10.70 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.86 kcal Atomic # 16 Polarization: -1.32 SS G_CDS: -2.42 Total: -3.75 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.46 -12.11 -42.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012849950.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.418 kcal (2) G-P(sol) polarization free energy of solvation -30.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds