Wall clock time and date at job start Tue Mar 31 2020 05:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 S 1.75338 * 124.35388 * 2 1 4 4 C 1.75894 * 92.17232 * 179.97438 * 3 2 1 5 5 N 1.34648 * 130.71313 * 179.97438 * 4 3 2 6 6 C 1.31111 * 121.63317 * 180.02562 * 5 4 3 7 7 S 1.76202 * 119.20241 * 180.02562 * 6 5 4 8 8 C 1.76205 * 100.00052 * 359.97438 * 7 6 5 9 9 H 1.08007 * 119.99733 * 359.97438 * 8 7 6 10 10 C 1.38732 * 119.99993 * 180.02562 * 8 7 6 11 11 N 1.31564 * 120.00278 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 119.99900 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.47030 * 59.99909 * 12 10 8 14 14 H 1.48503 * 109.47424 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47220 * 299.99902 * 12 10 8 16 16 N 1.36613 * 121.59479 * 359.97438 * 6 5 4 17 17 C 1.46506 * 119.86591 * 180.02562 * 16 6 5 18 18 C 1.52994 * 109.46655 * 90.00720 * 17 16 6 19 19 C 1.53004 * 109.46965 * 175.00039 * 18 17 16 20 20 C 1.53002 * 109.47131 * 294.99772 * 18 17 16 21 21 C 1.34726 * 120.26277 * 0.25654 * 16 6 5 22 22 O 1.21895 * 120.56647 * 179.69032 * 21 16 6 23 23 C 1.39424 * 109.60982 * 0.02562 * 4 3 2 24 24 C 1.32032 * 124.35133 * 180.02562 * 2 1 3 25 25 C 1.50705 * 122.58933 * 359.97438 * 24 2 1 26 26 H 1.08995 * 109.46848 * 269.99651 * 1 2 3 27 27 H 1.09002 * 109.46884 * 29.99676 * 1 2 3 28 28 H 1.09004 * 109.47128 * 149.99504 * 1 2 3 29 29 H 0.96998 * 120.00408 * 180.02562 * 11 10 8 30 30 H 1.09005 * 109.46787 * 210.00455 * 17 16 6 31 31 H 1.08994 * 109.47216 * 330.00717 * 17 16 6 32 32 H 1.08998 * 109.47955 * 54.99834 * 18 17 16 33 33 H 1.09002 * 109.47205 * 59.99895 * 19 18 17 34 34 H 1.09001 * 109.47278 * 179.97438 * 19 18 17 35 35 H 1.09004 * 109.47028 * 299.99447 * 19 18 17 36 36 H 1.08997 * 109.47072 * 60.00581 * 20 18 17 37 37 H 1.09001 * 109.47132 * 180.02562 * 20 18 17 38 38 H 1.09000 * 109.46828 * 299.99840 * 20 18 17 39 39 H 1.08998 * 109.46780 * 270.02403 * 25 24 2 40 40 H 1.08995 * 109.46737 * 30.02176 * 25 24 2 41 41 H 1.09004 * 109.47048 * 150.02422 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4964 1.4475 0.0000 4 6 3.9851 0.5107 0.0008 5 7 5.2720 0.9068 0.0007 6 6 6.2576 0.0421 0.0009 7 16 7.9182 0.6313 0.0014 8 6 7.6263 2.3690 0.0008 9 1 6.6143 2.7466 -0.0002 10 6 8.6962 3.2521 0.0005 11 7 9.9288 2.7922 0.0012 12 14 8.3867 5.0943 -0.0009 13 1 7.6140 5.4673 1.2112 14 1 9.6854 5.8145 -0.0004 15 1 7.6147 5.4656 -1.2139 16 7 6.0282 -1.3046 0.0017 17 6 7.1581 -2.2372 0.0024 18 6 7.5510 -2.5610 1.4452 19 6 8.6471 -3.6285 1.4479 20 6 8.0709 -1.2946 2.1286 21 6 4.7671 -1.7786 -0.0029 22 8 4.5560 -2.9791 -0.0079 23 6 3.6816 -0.8501 0.0004 24 6 2.2520 -1.0901 -0.0005 25 6 1.6617 -2.4767 -0.0005 26 1 -0.3633 -0.0001 1.0276 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 10.6769 3.4096 0.0013 30 1 6.8719 -3.1552 -0.5110 31 1 8.0049 -1.7823 -0.5114 32 1 6.6800 -2.9333 1.9843 33 1 9.5183 -3.2562 0.9088 34 1 8.9274 -3.8589 2.4757 35 1 8.2767 -4.5307 0.9610 36 1 7.2901 -0.5341 2.1267 37 1 8.3512 -1.5254 3.1564 38 1 8.9421 -0.9224 1.5896 39 1 1.5194 -2.8110 1.0271 40 1 0.7005 -2.4623 -0.5143 41 1 2.3383 -3.1596 -0.5144 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012866218.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:29 Heat of formation + Delta-G solvation = -6.001712 kcal Electronic energy + Delta-G solvation = -25153.689249 eV Core-core repulsion = 21671.617769 eV Total energy + Delta-G solvation = -3482.071481 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 338.086 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.03091 -37.52815 -36.88931 -35.79147 -33.11323 -32.88345 -30.74768 -28.99845 -27.03825 -27.00860 -26.15557 -25.66841 -23.61316 -22.73355 -20.16315 -19.32173 -18.73869 -17.49980 -17.12262 -16.66231 -15.91688 -15.71470 -15.18631 -14.64241 -14.57515 -14.21684 -13.99453 -13.50093 -13.29581 -13.16362 -12.77240 -12.73897 -12.55773 -12.42351 -12.18214 -12.09170 -11.94094 -11.70038 -11.44392 -11.33866 -11.30253 -11.28115 -10.97617 -10.64977 -10.59184 -10.48472 -10.45173 -9.54676 -9.49586 -9.31743 -9.17785 -9.04283 -8.11512 -7.84161 -6.91253 -6.75734 -4.48678 0.78534 1.61338 2.15257 2.21768 2.33580 2.57636 3.07024 3.08373 3.09843 3.13765 3.78339 4.04011 4.66197 4.72274 4.80204 4.98400 5.02772 5.15494 5.23032 5.31036 5.39957 5.49537 5.57280 5.63234 5.71653 5.73424 5.83032 5.89924 5.95443 5.96841 5.99807 6.11786 6.13468 6.20900 6.27949 6.42811 6.48435 6.63967 6.73707 6.83971 7.13763 7.32435 8.16736 8.30008 8.34154 8.77990 10.30475 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.009976 B = 0.005403 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.102686 B = 5181.176082 C = 7713.800921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.238 4.238 3 S 0.141 5.859 4 C 0.140 3.860 5 N -0.520 5.520 6 C 0.330 3.670 7 S 0.214 5.786 8 C -0.550 4.550 9 H 0.117 0.883 10 C 0.081 3.919 11 N -0.867 5.867 12 Si 0.934 3.066 13 H -0.267 1.267 14 H -0.280 1.280 15 H -0.267 1.267 16 N -0.522 5.522 17 C 0.097 3.903 18 C -0.107 4.107 19 C -0.141 4.141 20 C -0.155 4.155 21 C 0.571 3.429 22 O -0.548 6.548 23 C -0.295 4.295 24 C -0.016 4.016 25 C -0.095 4.095 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.280 0.720 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.549 -6.632 1.087 10.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.355 4.355 3 S 0.401 5.599 4 C -0.104 4.104 5 N -0.250 5.250 6 C -0.037 4.037 7 S 0.459 5.541 8 C -0.698 4.698 9 H 0.135 0.865 10 C -0.130 4.130 11 N -0.500 5.500 12 Si 0.758 3.242 13 H -0.191 1.191 14 H -0.206 1.206 15 H -0.192 1.192 16 N -0.245 5.245 17 C -0.026 4.026 18 C -0.127 4.127 19 C -0.199 4.199 20 C -0.213 4.213 21 C 0.367 3.633 22 O -0.428 6.428 23 C -0.316 4.316 24 C -0.027 4.027 25 C -0.154 4.154 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.492 -5.497 1.067 8.573 hybrid contribution -1.034 -0.347 0.004 1.090 sum -7.526 -5.844 1.071 9.588 Atomic orbital electron populations 1.20196 0.87954 1.02496 1.02103 1.23390 0.99480 0.95279 1.17316 1.83802 0.92008 1.06807 1.77256 1.23861 0.96903 0.93898 0.95783 1.68544 0.95796 1.31557 1.29069 1.26425 1.03984 0.80862 0.92431 1.83745 0.87223 1.06693 1.76427 1.23716 0.98433 0.89479 1.58142 0.86541 1.25172 0.93970 1.01250 0.92654 1.69881 0.98538 1.37050 1.44576 0.85943 0.77966 0.80461 0.79807 1.19149 1.20567 1.19173 1.46294 1.08486 1.06440 1.63310 1.22063 0.87853 0.93960 0.98706 1.21457 0.99131 0.97077 0.95001 1.21746 0.98194 0.97853 1.02119 1.22276 1.02459 0.96421 1.00143 1.16496 0.81508 0.88326 0.77013 1.90774 1.83793 1.15315 1.52933 1.20246 0.94082 0.92500 1.24754 1.18985 0.89778 0.95888 0.98086 1.20579 1.00083 0.92585 1.02177 0.91432 0.91828 0.90876 0.91003 0.88463 0.88482 0.90941 0.92035 0.92252 0.92621 0.92243 0.92893 0.90595 0.91468 0.92007 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 9.98 36.00 0.36 -0.41 16 2 C -0.24 -3.68 6.39 -36.23 -0.23 -3.91 16 3 S 0.14 2.40 23.20 -107.50 -2.49 -0.10 16 4 C 0.14 2.92 7.69 -15.87 -0.12 2.80 16 5 N -0.52 -11.77 8.44 -11.38 -0.10 -11.86 16 6 C 0.33 7.06 6.48 -88.41 -0.57 6.48 16 7 S 0.21 4.67 15.71 -107.50 -1.69 2.98 16 8 C -0.55 -13.75 9.24 30.92 0.29 -13.47 16 9 H 0.12 3.01 6.52 -52.48 -0.34 2.67 16 10 C 0.08 1.98 5.49 -17.48 -0.10 1.89 16 11 N -0.87 -21.78 13.22 55.49 0.73 -21.05 16 12 Si 0.93 19.50 29.55 -169.99 -5.02 14.48 16 13 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 14 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 15 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 16 N -0.52 -10.23 2.49 -118.96 -0.30 -10.53 16 17 C 0.10 1.57 4.67 -4.04 -0.02 1.55 16 18 C -0.11 -1.58 3.13 -90.62 -0.28 -1.86 16 19 C -0.14 -1.65 9.19 37.16 0.34 -1.30 16 20 C -0.16 -2.47 7.52 37.16 0.28 -2.19 16 21 C 0.57 11.84 7.50 -14.50 -0.11 11.73 16 22 O -0.55 -11.60 14.74 5.01 0.07 -11.53 16 23 C -0.30 -6.01 6.06 -105.02 -0.64 -6.65 16 24 C -0.02 -0.28 5.96 -103.88 -0.62 -0.90 16 25 C -0.10 -1.40 9.46 36.01 0.34 -1.06 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.72 6.52 -51.93 -0.34 0.38 16 29 H 0.28 6.60 8.31 -40.82 -0.34 6.26 16 30 H 0.10 1.51 7.42 -51.93 -0.39 1.12 16 31 H 0.10 1.50 6.55 -51.93 -0.34 1.16 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 1.10 5.80 -51.93 -0.30 0.80 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 1.24 6.65 -51.93 -0.35 0.89 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 0.73 6.49 -51.93 -0.34 0.39 16 41 H 0.08 1.31 6.59 -51.93 -0.34 0.96 16 LS Contribution 353.42 15.07 5.33 5.33 Total: -1.00 -28.07 353.42 -9.80 -37.87 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.25 Total: 1.71 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -1.08 Total: -7.30 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: 0.34 Total: -43.44 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.07 Total: -11.53 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Atomic # 16 Polarization: 7.07 SS G_CDS: -4.18 Total: 2.88 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.07 -9.80 -37.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012866218.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.867 kcal (2) G-P(sol) polarization free energy of solvation -28.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds