Wall clock time and date at job start Tue Mar 31 2020 07:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38292 * 119.97094 * 2 1 4 4 C 1.38251 * 120.11173 * 179.97438 * 3 2 1 5 5 C 1.38168 * 120.05442 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.02893 * 179.97438 * 5 4 3 7 7 C 1.38712 * 119.94506 * 359.97438 * 5 4 3 8 8 O 1.35899 * 120.05687 * 179.97438 * 7 5 4 9 9 C 1.42895 * 117.00050 * 184.82624 * 8 7 5 10 10 H 1.08996 * 109.47664 * 35.03146 * 9 8 7 11 11 C 1.53002 * 109.47439 * 275.03099 * 9 8 7 12 12 C 1.50708 * 109.47185 * 155.03691 * 9 8 7 13 13 O 1.21283 * 119.99735 * 4.99499 * 12 9 8 14 14 N 1.34774 * 120.00071 * 185.00149 * 12 9 8 15 15 C 1.39229 * 120.00028 * 184.85807 * 14 12 9 16 16 C 1.39480 * 119.83745 * 33.13182 * 15 14 12 17 17 C 1.36367 * 120.17302 * 179.72663 * 16 15 14 18 18 C 1.40868 * 119.82692 * 0.27722 * 17 16 15 19 19 C 1.41159 * 120.16368 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00027 * 344.14477 * 19 18 17 21 21 C 1.39900 * 120.00488 * 164.14962 * 19 18 17 22 22 N 1.30877 * 119.99755 * 329.78738 * 21 19 18 23 23 Si 1.86796 * 120.00286 * 149.78237 * 21 19 18 24 24 H 1.48497 * 109.47163 * 95.00054 * 23 21 19 25 25 H 1.48507 * 109.46972 * 214.99829 * 23 21 19 26 26 H 1.48496 * 109.47186 * 334.99614 * 23 21 19 27 27 C 1.40862 * 119.67463 * 0.02562 * 18 17 16 28 28 C 1.36375 * 119.82848 * 359.97438 * 27 18 17 29 29 C 1.38123 * 119.97709 * 180.29977 * 2 1 3 30 30 H 1.09001 * 109.47124 * 90.00161 * 1 2 3 31 31 H 1.09000 * 109.47233 * 209.99629 * 1 2 3 32 32 H 1.08994 * 109.47570 * 330.00388 * 1 2 3 33 33 H 1.08000 * 119.94484 * 359.97438 * 3 2 1 34 34 H 1.07996 * 119.97166 * 179.97438 * 4 3 2 35 35 H 1.08994 * 109.47132 * 270.02307 * 6 5 4 36 36 H 1.09002 * 109.46568 * 30.01927 * 6 5 4 37 37 H 1.08996 * 109.47394 * 150.01740 * 6 5 4 38 38 H 1.09001 * 109.47435 * 300.00613 * 11 9 8 39 39 H 1.09000 * 109.46989 * 59.99803 * 11 9 8 40 40 H 1.08994 * 109.47979 * 179.97438 * 11 9 8 41 41 H 0.97003 * 120.00142 * 4.85433 * 14 12 9 42 42 H 1.08003 * 119.90908 * 0.02562 * 16 15 14 43 43 H 1.08009 * 120.08498 * 180.30018 * 17 16 15 44 44 H 0.96995 * 120.00403 * 180.02562 * 22 21 19 45 45 H 1.08002 * 120.08812 * 180.02562 * 27 18 17 46 46 H 1.07999 * 119.91983 * 180.02562 * 28 27 18 47 47 H 1.08003 * 120.02329 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5803 1.2014 0.0005 5 6 4.2752 0.0072 0.0005 6 6 5.7822 0.0116 0.0005 7 6 3.5846 -1.1958 0.0005 8 8 4.2658 -2.3717 0.0000 9 6 3.4932 -3.5690 -0.1071 10 1 2.6342 -3.3905 -0.7539 11 6 3.0073 -3.9884 1.2818 12 6 4.3445 -4.6655 -0.6936 13 8 5.5225 -4.4705 -0.9064 14 7 3.7968 -5.8627 -0.9819 15 6 4.6020 -6.9072 -1.4283 16 6 5.9119 -7.0214 -0.9632 17 6 6.7047 -8.0449 -1.3916 18 6 6.1993 -8.9850 -2.3109 19 6 7.0135 -10.0476 -2.7587 20 1 8.0826 -10.0083 -2.6104 21 6 6.4358 -11.1516 -3.3948 22 7 5.2190 -11.5219 -3.0860 23 14 7.4008 -12.0971 -4.6847 24 1 8.0690 -13.2608 -4.0487 25 1 6.4755 -12.5753 -5.7433 26 1 8.4250 -11.2069 -5.2878 27 6 4.8774 -8.8596 -2.7811 28 6 4.0966 -7.8307 -2.3435 29 6 2.1971 -1.1964 -0.0063 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5137 33 1 1.6564 2.1325 -0.0004 34 1 4.1175 2.1383 0.0001 35 1 6.1455 0.0130 -1.0271 36 1 6.1428 0.9025 0.5147 37 1 6.1481 -0.8775 0.5141 38 1 3.8662 -4.1669 1.9287 39 1 2.3916 -3.1954 1.7061 40 1 2.4176 -4.9014 1.2002 41 1 2.8417 -5.9968 -0.8783 42 1 6.2978 -6.2999 -0.2581 43 1 7.7173 -8.1347 -1.0268 44 1 4.8185 -12.2876 -3.5267 45 1 4.4829 -9.5768 -3.4856 46 1 3.0827 -7.7333 -2.7027 47 1 1.6571 -2.1318 -0.0116 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013710432.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:58 Heat of formation + Delta-G solvation = -35.394187 kcal Electronic energy + Delta-G solvation = -28099.882229 eV Core-core repulsion = 24212.286900 eV Total energy + Delta-G solvation = -3887.595330 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 6.03 seconds Orbital eigenvalues (eV) -40.78787 -39.56306 -37.90808 -36.98470 -34.52454 -34.09483 -33.19974 -31.73473 -30.13156 -29.56458 -29.38431 -28.90256 -25.57494 -25.05015 -24.29369 -22.72931 -21.53119 -21.20527 -20.70073 -19.56165 -17.84922 -17.50700 -17.27162 -16.16622 -15.84858 -15.73192 -15.65944 -15.22960 -14.70566 -14.38265 -14.14922 -14.00223 -13.76409 -13.40036 -13.26420 -13.06592 -12.99584 -12.82335 -12.70849 -12.45489 -12.24691 -12.13492 -11.98387 -11.95185 -11.68060 -11.45266 -11.42596 -11.14149 -11.05160 -11.00026 -10.89456 -10.56972 -10.17837 -9.73547 -9.50997 -9.13784 -8.87046 -8.69836 -8.17537 -7.57257 -7.16111 -6.93027 -4.29779 1.11713 1.27427 2.47740 2.75008 2.90870 3.02451 3.07895 3.09941 3.34056 3.53846 3.83761 3.85943 4.46781 4.47783 4.58145 4.61739 4.80038 4.82060 4.90486 4.97277 5.06713 5.29591 5.31419 5.35375 5.44070 5.50825 5.51848 5.56296 5.68209 5.69600 5.80584 5.89637 6.13510 6.16578 6.17630 6.33965 6.39827 6.40530 6.63359 6.73728 6.89329 6.96064 7.12367 7.24783 7.29810 7.54575 7.66754 7.86874 7.99510 8.22318 8.24717 8.52460 8.68938 8.81776 8.96421 9.97767 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.024993 B = 0.002046 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.032030 B =13680.707224 C =14227.568101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.055 4.055 3 C -0.159 4.159 4 C -0.080 4.080 5 C -0.119 4.119 6 C -0.107 4.107 7 C 0.137 3.863 8 O -0.279 6.279 9 C 0.068 3.932 10 H 0.093 0.907 11 C -0.174 4.174 12 C 0.500 3.500 13 O -0.509 6.509 14 N -0.642 5.642 15 C -0.023 4.023 16 C -0.067 4.067 17 C -0.225 4.225 18 C 0.108 3.892 19 C -0.456 4.456 20 H 0.082 0.918 21 C 0.083 3.917 22 N -0.770 5.770 23 Si 0.901 3.099 24 H -0.269 1.269 25 H -0.274 1.274 26 H -0.257 1.257 27 C -0.173 4.173 28 C -0.103 4.103 29 C -0.210 4.210 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.121 0.879 34 H 0.127 0.873 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.394 0.606 42 H 0.102 0.898 43 H 0.094 0.906 44 H 0.283 0.717 45 H 0.119 0.881 46 H 0.089 0.911 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.581 18.306 5.903 21.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.055 4.055 3 C -0.177 4.177 4 C -0.098 4.098 5 C -0.120 4.120 6 C -0.163 4.163 7 C 0.091 3.909 8 O -0.191 6.191 9 C 0.008 3.992 10 H 0.111 0.889 11 C -0.232 4.232 12 C 0.285 3.715 13 O -0.384 6.384 14 N -0.286 5.286 15 C -0.115 4.115 16 C -0.087 4.087 17 C -0.245 4.245 18 C 0.105 3.895 19 C -0.483 4.483 20 H 0.100 0.900 21 C -0.138 4.138 22 N -0.393 5.393 23 Si 0.724 3.276 24 H -0.194 1.194 25 H -0.198 1.198 26 H -0.181 1.181 27 C -0.193 4.193 28 C -0.123 4.123 29 C -0.229 4.229 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.139 0.861 34 H 0.145 0.855 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.227 0.773 42 H 0.120 0.880 43 H 0.113 0.887 44 H 0.094 0.906 45 H 0.136 0.864 46 H 0.107 0.893 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.693 18.233 5.759 21.437 hybrid contribution -0.504 -0.649 -0.552 0.990 sum -10.196 17.584 5.206 20.982 Atomic orbital electron populations 1.20804 0.91101 1.02796 1.02451 1.19665 0.95904 0.92496 0.97423 1.20888 0.94074 0.97386 1.05345 1.20856 0.93959 0.96732 0.98303 1.19298 0.96771 0.90192 1.05755 1.20620 0.90329 1.02788 1.02578 1.18895 0.90316 0.85823 0.95876 1.86225 1.34386 1.11183 1.87281 1.22217 0.94090 0.84314 0.98562 0.88898 1.22318 1.02774 1.02677 0.95413 1.19917 0.88665 0.82767 0.80162 1.90729 1.15978 1.80433 1.51241 1.42787 1.10600 1.09787 1.65422 1.17029 0.93318 0.93760 1.07347 1.20240 0.92804 0.96905 0.98728 1.20551 0.99615 0.99808 1.04567 1.17628 0.91903 0.91423 0.88566 1.19582 0.95503 1.01033 1.32215 0.90026 1.25999 0.94858 0.96944 0.96017 1.69925 1.14947 1.21291 1.33161 0.86421 0.80792 0.79651 0.80717 1.19415 1.19843 1.18080 1.20820 0.95380 0.99039 1.04020 1.20156 0.98373 0.96493 0.97289 1.21149 0.92862 0.98982 1.09913 0.91013 0.91521 0.91423 0.86103 0.85470 0.91270 0.91917 0.90757 0.90571 0.90943 0.90156 0.77257 0.88038 0.88730 0.90575 0.86370 0.89269 0.85278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.01 36.00 0.36 -0.41 16 2 C -0.05 -0.52 5.88 -104.65 -0.62 -1.14 16 3 C -0.16 -1.47 9.70 -39.56 -0.38 -1.85 16 4 C -0.08 -0.80 9.70 -39.60 -0.38 -1.18 16 5 C -0.12 -1.44 5.89 -104.47 -0.62 -2.06 16 6 C -0.11 -1.21 9.79 36.00 0.35 -0.86 16 7 C 0.14 1.79 6.57 -39.22 -0.26 1.53 16 8 O -0.28 -4.22 8.38 -39.28 -0.33 -4.54 16 9 C 0.07 0.91 2.64 -27.88 -0.07 0.83 16 10 H 0.09 1.01 6.26 -51.93 -0.33 0.68 16 11 C -0.17 -1.83 9.14 37.16 0.34 -1.49 16 12 C 0.50 8.94 6.91 -10.98 -0.08 8.86 16 13 O -0.51 -11.51 14.13 -14.31 -0.20 -11.71 16 14 N -0.64 -11.19 5.27 -9.74 -0.05 -11.24 16 15 C -0.02 -0.51 6.30 -83.57 -0.53 -1.04 16 16 C -0.07 -1.62 8.57 -39.79 -0.34 -1.97 16 17 C -0.23 -5.76 9.74 -39.26 -0.38 -6.15 16 18 C 0.11 2.88 5.64 -106.80 -0.60 2.27 16 19 C -0.46 -11.97 8.98 -37.85 -0.34 -12.31 16 20 H 0.08 2.08 8.00 -52.49 -0.42 1.66 16 21 C 0.08 2.03 4.92 -17.34 -0.09 1.94 16 22 N -0.77 -19.10 11.20 55.55 0.62 -18.48 16 23 Si 0.90 18.07 29.65 -169.99 -5.04 13.03 16 24 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 25 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 26 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 27 C -0.17 -4.41 8.75 -39.26 -0.34 -4.75 16 28 C -0.10 -2.34 9.89 -39.79 -0.39 -2.73 16 29 C -0.21 -2.29 7.91 -39.43 -0.31 -2.60 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 32 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 33 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 37 H 0.07 0.97 7.53 -51.93 -0.39 0.57 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.65 6.98 -51.93 -0.36 0.28 16 40 H 0.08 0.70 8.09 -51.93 -0.42 0.28 16 41 H 0.39 5.25 8.76 -40.82 -0.36 4.89 16 42 H 0.10 2.45 6.36 -52.48 -0.33 2.11 16 43 H 0.09 2.30 8.06 -52.48 -0.42 1.88 16 44 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 45 H 0.12 3.06 6.01 -52.49 -0.32 2.74 16 46 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 47 H 0.13 1.19 5.46 -52.48 -0.29 0.90 16 LS Contribution 389.57 15.07 5.87 5.87 Total: -1.00 -31.23 389.57 -10.38 -41.61 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -6.57 Total: 10.56 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: -4.68 Total: -25.09 kcal Atomic # 7 Polarization: -30.29 SS G_CDS: 0.57 Total: -29.72 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.53 Total: -16.26 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.04 Total: 13.03 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.23 -10.38 -41.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013710432.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.213 kcal (2) G-P(sol) polarization free energy of solvation -31.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.03 seconds