Wall clock time and date at job start Tue Mar 31 2020 05:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86805 * 119.99919 * 2 1 4 4 H 1.48496 * 109.47164 * 274.99414 * 3 2 1 5 5 H 1.48501 * 109.46877 * 34.99232 * 3 2 1 6 6 H 1.48497 * 109.47237 * 154.98835 * 3 2 1 7 7 C 1.39905 * 120.00287 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00055 * 147.54925 * 7 2 1 9 9 C 1.41139 * 119.99918 * 327.55394 * 7 2 1 10 10 C 1.40881 * 120.15909 * 157.95506 * 9 7 2 11 11 C 1.36356 * 119.82955 * 180.02562 * 10 9 7 12 12 C 1.39518 * 120.16619 * 0.02580 * 11 10 9 13 13 N 1.39119 * 119.83527 * 179.97438 * 12 11 10 14 14 C 1.34780 * 120.00011 * 37.85591 * 13 12 11 15 15 O 1.21591 * 120.00101 * 356.67675 * 14 13 12 16 16 C 1.47557 * 119.99607 * 176.67273 * 14 13 12 17 17 C 1.39748 * 120.03671 * 0.02562 * 16 14 13 18 18 C 1.37801 * 120.05554 * 179.97438 * 17 16 14 19 19 C 1.38827 * 120.02322 * 0.03386 * 18 17 16 20 20 C 1.39672 * 120.20579 * 359.97438 * 19 18 17 21 21 C 1.37970 * 120.01946 * 359.97438 * 20 19 18 22 22 O 1.36035 * 119.45463 * 179.97438 * 20 19 18 23 23 C 1.42997 * 116.66339 * 327.21886 * 22 20 19 24 24 C 1.50751 * 109.57818 * 46.34518 * 23 22 20 25 25 O 1.21287 * 120.11315 * 148.66167 * 24 23 22 26 26 N 1.35021 * 119.79614 * 328.65930 * 24 23 22 27 27 C 1.39513 * 120.32472 * 0.24856 * 12 11 10 28 28 C 1.36361 * 120.16815 * 359.44177 * 27 12 11 29 29 H 0.97000 * 120.00076 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.08911 * 359.97438 * 10 9 7 31 31 H 1.07996 * 119.91788 * 180.02562 * 11 10 9 32 32 H 0.97001 * 120.00480 * 217.85283 * 13 12 11 33 33 H 1.07999 * 119.97107 * 359.97005 * 17 16 14 34 34 H 1.07998 * 119.98726 * 180.02562 * 18 17 16 35 35 H 1.07997 * 120.12255 * 179.97438 * 21 20 19 36 36 H 1.09000 * 109.44989 * 166.37102 * 23 22 20 37 37 H 1.09005 * 109.45207 * 286.32000 * 23 22 20 38 38 H 0.97001 * 120.46912 * 181.62533 * 26 24 23 39 39 H 1.08002 * 119.91149 * 179.70794 * 27 12 11 40 40 H 1.07994 * 120.08536 * 180.26843 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3846 2.1074 -1.3947 5 1 1.4968 2.6199 0.8029 6 1 3.5890 1.4121 0.5919 7 6 2.0083 -1.2116 -0.0005 8 1 2.9619 -1.2843 -0.5025 9 6 1.4679 -2.3388 0.6547 10 6 1.8859 -3.6350 0.2943 11 6 1.3590 -4.7193 0.9314 12 6 0.4078 -4.5475 1.9376 13 7 -0.1256 -5.6587 2.5827 14 6 0.6604 -6.7171 2.8628 15 8 1.8203 -6.7264 2.4984 16 6 0.1131 -7.8646 3.6119 17 6 -1.2201 -7.8549 4.0307 18 6 -1.7317 -8.9266 4.7298 19 6 -0.9227 -10.0170 5.0195 20 6 0.4106 -10.0329 4.6039 21 6 0.9279 -8.9631 3.9027 22 8 1.1897 -11.1090 4.8965 23 6 0.9158 -11.7839 6.1270 24 6 -0.5697 -12.0010 6.2642 25 8 -0.9906 -12.9726 6.8557 26 7 -1.4304 -11.1103 5.7268 27 6 -0.0152 -3.2673 2.2959 28 6 0.5075 -2.1732 1.6719 29 1 -0.4850 0.8400 0.0004 30 1 2.6213 -3.7696 -0.4852 31 1 1.6788 -5.7135 0.6566 32 1 -1.0632 -5.6717 2.8310 33 1 -1.8499 -7.0068 3.8063 34 1 -2.7623 -8.9181 5.0526 35 1 1.9587 -8.9735 3.5809 36 1 1.4255 -12.7474 6.1337 37 1 1.2727 -11.1786 6.9603 38 1 -2.3878 -11.2278 5.8294 39 1 -0.7553 -3.1423 3.0724 40 1 0.1822 -1.1826 1.9534 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015030455.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:44 Heat of formation + Delta-G solvation = -48.696814 kcal Electronic energy + Delta-G solvation = -26924.633771 eV Core-core repulsion = 22862.514069 eV Total energy + Delta-G solvation = -4062.119702 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.110 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.87890 -40.03192 -39.01578 -37.83692 -37.11977 -35.48027 -34.57668 -33.14348 -31.10250 -30.56243 -29.59842 -29.00593 -28.13896 -25.36705 -24.28001 -23.47248 -21.81648 -21.02564 -20.64653 -19.79509 -19.11965 -18.28411 -17.67402 -17.36027 -17.05155 -16.65939 -15.92961 -15.62088 -15.25916 -15.08573 -14.74522 -14.60721 -14.50399 -14.25564 -14.00011 -13.60011 -13.36552 -13.15730 -12.83748 -12.65906 -12.12893 -12.04355 -11.82457 -11.70514 -11.52387 -11.18527 -11.10711 -10.98214 -10.57700 -10.57039 -10.22913 -9.79278 -9.56339 -9.16112 -9.10550 -8.75481 -8.39902 -7.59340 -7.19721 -6.93252 -4.31464 0.33951 0.87675 1.70796 2.24476 2.54915 2.78832 2.89028 3.02332 3.04557 3.07938 3.19493 3.48437 3.65041 3.76175 3.85818 4.14873 4.45105 4.46051 4.59882 4.64318 4.70423 4.91515 5.02074 5.37038 5.54133 5.62760 5.70244 5.91803 6.04267 6.08981 6.15393 6.29462 6.39013 6.71131 6.82893 6.91045 6.95539 7.09414 7.23843 7.24618 7.52171 7.63627 7.83623 7.97784 8.20210 8.22005 8.50116 8.67656 8.79488 8.94572 9.97045 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.039585 B = 0.001920 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.165363 B =14579.501876 C =15007.423766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.896 3.104 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.463 4.463 8 H 0.083 0.917 9 C 0.113 3.887 10 C -0.224 4.224 11 C -0.063 4.063 12 C -0.027 4.027 13 N -0.638 5.638 14 C 0.540 3.460 15 O -0.526 6.526 16 C -0.110 4.110 17 C -0.077 4.077 18 C -0.128 4.128 19 C 0.108 3.892 20 C 0.068 3.932 21 C -0.049 4.049 22 O -0.298 6.298 23 C 0.050 3.950 24 C 0.492 3.508 25 O -0.512 6.512 26 N -0.657 5.657 27 C -0.099 4.099 28 C -0.172 4.172 29 H 0.284 0.716 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.393 0.607 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.155 0.845 36 H 0.147 0.853 37 H 0.102 0.898 38 H 0.417 0.583 39 H 0.090 0.910 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.322 -15.199 10.842 19.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.134 4.134 3 Si 0.720 3.280 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.180 1.180 7 C -0.490 4.490 8 H 0.101 0.899 9 C 0.111 3.889 10 C -0.244 4.244 11 C -0.083 4.083 12 C -0.118 4.118 13 N -0.280 5.280 14 C 0.327 3.673 15 O -0.404 6.404 16 C -0.114 4.114 17 C -0.097 4.097 18 C -0.149 4.149 19 C 0.012 3.988 20 C 0.022 3.978 21 C -0.069 4.069 22 O -0.212 6.212 23 C -0.028 4.028 24 C 0.279 3.721 25 O -0.386 6.386 26 N -0.304 5.304 27 C -0.119 4.119 28 C -0.192 4.192 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.121 0.879 32 H 0.228 0.772 33 H 0.156 0.844 34 H 0.157 0.843 35 H 0.172 0.828 36 H 0.165 0.835 37 H 0.120 0.880 38 H 0.256 0.744 39 H 0.108 0.892 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.608 -15.726 10.812 19.633 hybrid contribution -0.966 0.785 0.363 1.296 sum -5.574 -14.942 11.174 19.473 Atomic orbital electron populations 1.69941 1.08099 1.29952 1.31019 1.25957 0.94378 1.01586 0.91508 0.86499 0.81549 0.80746 0.79248 1.19427 1.19867 1.18042 1.19534 1.05415 0.93746 1.30335 0.89918 1.17610 0.89632 0.91872 0.89825 1.20601 1.07114 0.92287 1.04414 1.20314 0.96197 0.98078 0.93679 1.17004 1.07765 0.84637 1.02440 1.42794 1.11866 1.15925 1.57461 1.17982 0.86023 0.82755 0.80543 1.90789 1.16966 1.79818 1.52842 1.19937 0.94053 0.95609 1.01806 1.21188 0.94304 0.98056 0.96133 1.20530 1.00120 0.92092 1.02161 1.18182 0.92898 0.89499 0.98240 1.18385 0.87766 0.89477 1.02185 1.20603 1.01309 0.88320 0.96634 1.86316 1.56320 1.40514 1.38081 1.23221 0.91104 1.00821 0.87701 1.21616 0.90503 0.82074 0.77935 1.90823 1.79450 1.27782 1.40552 1.43653 1.10826 1.23645 1.52289 1.20161 1.00621 0.91529 0.99624 1.20614 1.02598 0.96655 0.99300 0.90536 0.88657 0.87857 0.77210 0.84357 0.84271 0.82754 0.83502 0.88005 0.74357 0.89230 0.87453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.88 11.78 55.55 0.65 -18.22 16 2 C 0.09 2.12 4.77 -17.34 -0.08 2.03 16 3 Si 0.90 17.79 29.66 -169.99 -5.04 12.75 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 6 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 7 C -0.46 -11.96 8.94 -37.86 -0.34 -12.30 16 8 H 0.08 2.07 8.02 -52.48 -0.42 1.65 16 9 C 0.11 2.96 5.57 -106.80 -0.60 2.37 16 10 C -0.22 -5.58 9.74 -39.26 -0.38 -5.97 16 11 C -0.06 -1.48 8.59 -39.78 -0.34 -1.82 16 12 C -0.03 -0.57 6.25 -83.60 -0.52 -1.09 16 13 N -0.64 -10.66 5.24 -10.67 -0.06 -10.71 16 14 C 0.54 9.04 7.57 -12.46 -0.09 8.95 16 15 O -0.53 -10.91 13.95 5.29 0.07 -10.83 16 16 C -0.11 -1.36 5.88 -104.94 -0.62 -1.97 16 17 C -0.08 -0.70 9.53 -39.18 -0.37 -1.07 16 18 C -0.13 -0.96 9.92 -39.52 -0.39 -1.35 16 19 C 0.11 0.94 6.55 -83.49 -0.55 0.39 16 20 C 0.07 0.71 6.43 -39.14 -0.25 0.45 16 21 C -0.05 -0.58 9.53 -39.09 -0.37 -0.95 16 22 O -0.30 -2.91 10.45 -19.85 -0.21 -3.11 16 23 C 0.05 0.35 7.17 36.03 0.26 0.61 16 24 C 0.49 4.41 7.93 -10.85 -0.09 4.33 16 25 O -0.51 -6.06 17.95 5.55 0.10 -5.96 16 26 N -0.66 -5.08 5.45 -9.65 -0.05 -5.14 16 27 C -0.10 -2.18 9.90 -39.78 -0.39 -2.57 16 28 C -0.17 -4.26 8.74 -39.26 -0.34 -4.61 16 29 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 30 H 0.10 2.26 8.06 -52.48 -0.42 1.84 16 31 H 0.10 2.39 6.45 -52.49 -0.34 2.05 16 32 H 0.39 5.01 6.84 -40.82 -0.28 4.73 16 33 H 0.14 0.96 6.39 -52.49 -0.34 0.62 16 34 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 35 H 0.15 1.94 7.64 -52.49 -0.40 1.54 16 36 H 0.15 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.42 2.40 8.88 -40.82 -0.36 2.04 16 39 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 40 H 0.11 2.70 6.52 -52.49 -0.34 2.35 16 LS Contribution 348.31 15.07 5.25 5.25 Total: -1.00 -31.94 348.31 -8.48 -40.42 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -3.73 Total: 10.13 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -5.47 Total: -14.57 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.55 Total: -34.07 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.03 Total: -19.90 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.04 Total: 12.75 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.94 -8.48 -40.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015030455.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.277 kcal (2) G-P(sol) polarization free energy of solvation -31.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds