Wall clock time and date at job start Tue Mar 31 2020 06:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99593 * 2 1 4 4 H 1.48493 * 109.47272 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47173 * 120.00501 * 3 2 1 6 6 H 1.48504 * 109.46831 * 240.00120 * 3 2 1 7 7 C 1.37873 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00235 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99956 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47567 * 179.97438 * 9 7 2 11 11 C 1.32256 * 120.23693 * 89.99404 * 10 9 7 12 12 O 1.21696 * 122.54240 * 359.95643 * 11 10 9 13 13 C 1.46898 * 114.91655 * 179.97438 * 11 10 9 14 14 C 1.35636 * 127.97300 * 180.02562 * 13 11 10 15 15 C 1.46967 * 120.00127 * 172.52985 * 14 13 11 16 16 C 1.39954 * 120.16324 * 338.91267 * 15 14 13 17 17 C 1.37829 * 119.82781 * 179.73752 * 16 15 14 18 18 C 1.38553 * 120.16316 * 0.51355 * 17 16 15 19 19 Cl 1.73603 * 119.82789 * 179.74162 * 18 17 16 20 20 C 1.38556 * 120.34095 * 359.76207 * 18 17 16 21 21 C 1.37822 * 120.16596 * 359.97438 * 20 18 17 22 22 S 1.77486 * 104.05385 * 359.97438 * 13 11 10 23 23 C 1.33789 * 120.22638 * 269.72292 * 10 9 7 24 24 S 1.71197 * 126.54681 * 359.97438 * 23 10 9 25 25 H 0.96998 * 120.00496 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47036 * 299.99711 * 9 7 2 27 27 H 1.08996 * 109.47319 * 59.99274 * 9 7 2 28 28 H 1.08002 * 120.00058 * 352.53164 * 14 13 11 29 29 H 1.07996 * 120.08309 * 0.02562 * 16 15 14 30 30 H 1.07995 * 119.91536 * 180.25498 * 17 16 15 31 31 H 1.07998 * 119.92027 * 179.97438 * 20 18 17 32 32 H 1.08000 * 120.08400 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7464 -0.0006 5 1 3.1029 1.6965 1.2124 6 1 3.1028 1.6965 -1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.6360 -4.1188 1.1432 12 8 2.2750 -3.6951 2.2253 13 6 3.5860 -5.2310 1.0069 14 6 4.1900 -5.9383 1.9942 15 6 4.9881 -7.1273 1.6637 16 6 4.7884 -7.7928 0.4488 17 6 5.5445 -8.9041 0.1435 18 6 6.4928 -9.3687 1.0405 19 17 7.4356 -10.7732 0.6499 20 6 6.6922 -8.7186 2.2476 21 6 5.9476 -7.6029 2.5647 22 16 3.7600 -5.4367 -0.7473 23 6 2.6366 -4.1282 -1.1554 24 16 2.1916 -3.6204 -2.7286 25 1 -0.4851 0.8400 0.0004 26 1 0.6242 -2.5567 0.8904 27 1 0.6248 -2.5571 -0.8896 28 1 4.0845 -5.6277 3.0232 29 1 4.0470 -7.4338 -0.2496 30 1 5.3944 -9.4163 -0.7953 31 1 7.4329 -9.0869 2.9419 32 1 6.1039 -7.0974 3.5062 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015057249.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:07 Heat of formation + Delta-G solvation = 41.502013 kcal Electronic energy + Delta-G solvation = -20808.260302 eV Core-core repulsion = 17399.573051 eV Total energy + Delta-G solvation = -3408.687251 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 338.990 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.02411 -39.81077 -37.04243 -36.70989 -34.45295 -33.05844 -31.69206 -30.39895 -28.46921 -26.63783 -25.04308 -23.60825 -22.95699 -21.31126 -19.88407 -18.74373 -17.63488 -17.41484 -17.02224 -16.00682 -15.78445 -15.55604 -15.42887 -14.85565 -14.61125 -14.16108 -14.06227 -13.94924 -13.23252 -12.77122 -12.41870 -12.32480 -12.04608 -11.96909 -11.79235 -11.65041 -11.34812 -11.26973 -10.94899 -10.87804 -10.74469 -10.38353 -10.07535 -9.81681 -9.58267 -9.16370 -8.62953 -8.40277 -7.65019 -7.28609 -6.25879 -4.32581 -0.43836 0.45703 0.66726 0.89858 1.41743 1.51063 1.66290 2.23869 2.85390 2.93366 3.22204 3.25344 3.28641 3.32592 3.90156 4.24174 4.29960 4.36085 4.45308 4.72986 4.77855 5.11480 5.14769 5.26521 5.31378 5.45972 5.69599 5.72807 5.96731 6.09874 6.20874 6.40904 6.97049 7.31516 7.57559 7.66710 7.81521 8.63805 9.32034 10.83637 Molecular weight = 338.99amu Principal moments of inertia in cm(-1) A = 0.021990 B = 0.002790 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.978974 B =10033.789550 C =10689.990054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.073 3.927 3 Si 0.906 3.094 4 H -0.283 1.283 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.533 4.533 8 H 0.059 0.941 9 C 0.219 3.781 10 N -0.487 5.487 11 C 0.542 3.458 12 O -0.443 6.443 13 C -0.227 4.227 14 C 0.046 3.954 15 C -0.077 4.077 16 C -0.087 4.087 17 C -0.104 4.104 18 C -0.021 4.021 19 Cl -0.066 7.066 20 C -0.113 4.113 21 C -0.073 4.073 22 S 0.059 5.941 23 C 0.272 3.728 24 S -0.370 6.370 25 H 0.269 0.731 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.162 0.838 29 H 0.147 0.853 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.865 -20.328 4.586 24.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.208 1.208 5 H -0.200 1.200 6 H -0.197 1.197 7 C -0.572 4.572 8 H 0.078 0.922 9 C 0.100 3.900 10 N -0.202 5.202 11 C 0.325 3.675 12 O -0.316 6.316 13 C -0.345 4.345 14 C 0.016 3.984 15 C -0.078 4.078 16 C -0.108 4.108 17 C -0.123 4.123 18 C -0.048 4.048 19 Cl -0.037 7.037 20 C -0.131 4.131 21 C -0.092 4.092 22 S 0.301 5.699 23 C -0.080 4.080 24 S -0.234 6.234 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.179 0.821 29 H 0.164 0.836 30 H 0.160 0.840 31 H 0.158 0.842 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 12.832 -20.394 3.378 24.331 hybrid contribution 0.013 1.469 1.571 2.151 sum 12.845 -18.925 4.949 23.401 Atomic orbital electron populations 1.69895 1.06023 1.27853 1.48446 1.24830 0.94966 0.99297 0.94083 0.86413 0.79533 0.81869 0.78909 1.20781 1.20041 1.19725 1.20923 0.93090 0.89313 1.53893 0.92248 1.20371 0.87138 0.80796 1.01665 1.45810 1.39023 1.31320 1.04001 1.17910 0.82043 0.82610 0.84940 1.90887 1.55473 1.59368 1.25862 1.24383 1.07264 1.04311 0.98551 1.21817 0.88643 0.89320 0.98602 1.19059 0.97759 0.95605 0.95384 1.21714 0.98608 0.94662 0.95840 1.21013 0.94807 0.96747 0.99699 1.21203 0.96116 0.91319 0.96176 1.98391 1.71540 1.39686 1.94044 1.21022 1.00729 0.95723 0.95675 1.21342 0.93688 0.94975 0.99168 1.85981 1.51173 1.35618 0.97121 1.28611 0.91266 0.91966 0.96134 1.92612 1.63288 1.66909 1.00631 0.92103 0.92179 0.90532 0.82092 0.83631 0.84036 0.84247 0.83934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.45 13.29 55.43 0.74 -24.71 16 2 C 0.07 2.02 5.46 -17.82 -0.10 1.93 16 3 Si 0.91 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.53 -14.76 9.38 -34.44 -0.32 -15.08 16 8 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 9 C 0.22 5.57 4.87 -5.19 -0.03 5.55 16 10 N -0.49 -10.41 2.46 -118.88 -0.29 -10.70 16 11 C 0.54 10.48 7.62 -13.87 -0.11 10.37 16 12 O -0.44 -9.60 16.85 5.19 0.09 -9.51 16 13 C -0.23 -3.26 6.34 -37.01 -0.23 -3.49 16 14 C 0.05 0.49 9.83 -36.98 -0.36 0.12 16 15 C -0.08 -0.69 5.80 -105.08 -0.61 -1.30 16 16 C -0.09 -0.80 8.62 -39.09 -0.34 -1.14 16 17 C -0.10 -0.83 9.81 -39.61 -0.39 -1.22 16 18 C -0.02 -0.16 6.33 -39.35 -0.25 -0.41 16 19 Cl -0.07 -0.49 28.95 -51.86 -1.50 -1.99 16 20 C -0.11 -0.76 9.81 -39.62 -0.39 -1.15 16 21 C -0.07 -0.51 9.80 -39.09 -0.38 -0.89 16 22 S 0.06 0.84 19.03 -107.50 -2.05 -1.20 16 23 C 0.27 5.33 7.58 53.61 0.41 5.74 16 24 S -0.37 -7.96 29.72 -107.50 -3.20 -11.16 16 25 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 26 H 0.06 1.62 7.51 -51.92 -0.39 1.23 16 27 H 0.08 2.05 7.06 -51.93 -0.37 1.69 16 28 H 0.16 1.42 8.06 -52.49 -0.42 0.99 16 29 H 0.15 1.42 4.62 -28.90 -0.13 1.28 16 30 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 31 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 32 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 LS Contribution 329.93 15.07 4.97 4.97 Total: -1.00 -31.14 329.93 -11.48 -42.63 By element: Atomic # 1 Polarization: -1.73 SS G_CDS: -2.13 Total: -3.86 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -3.10 Total: -0.98 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.44 Total: -35.42 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -7.12 SS G_CDS: -5.24 Total: -12.36 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.50 Total: -1.99 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.14 -11.48 -42.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015057249.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.130 kcal (2) G-P(sol) polarization free energy of solvation -31.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds