Wall clock time and date at job start Tue Mar 31 2020 06:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86801 * 120.00218 * 2 1 4 4 H 1.48500 * 109.46980 * 269.99936 * 3 2 1 5 5 H 1.48498 * 109.46785 * 29.99611 * 3 2 1 6 6 H 1.48496 * 109.47134 * 149.99657 * 3 2 1 7 7 C 1.38622 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99606 * 0.02562 * 7 2 1 9 9 O 1.34809 * 119.99938 * 179.97438 * 7 2 1 10 10 C 1.35661 * 116.99557 * 185.05858 * 9 7 2 11 11 C 1.39077 * 119.91282 * 354.45908 * 10 9 7 12 12 C 1.37714 * 120.08751 * 180.02562 * 11 10 9 13 13 C 1.39827 * 119.91073 * 359.97438 * 12 11 10 14 14 C 1.47342 * 120.08813 * 180.02562 * 13 12 11 15 15 N 1.29879 * 119.99844 * 180.26935 * 14 13 12 16 16 N 1.40097 * 119.99683 * 179.72408 * 15 14 13 17 17 C 1.37987 * 120.00099 * 180.02562 * 16 15 14 18 18 N 1.28954 * 124.81756 * 359.69647 * 17 16 15 19 19 C 1.34729 * 117.88688 * 179.81826 * 18 17 16 20 20 C 1.41134 * 128.73587 * 180.20085 * 19 18 17 21 21 C 1.37181 * 120.43307 * 180.27745 * 20 19 18 22 22 C 1.38724 * 120.60235 * 359.97438 * 21 20 19 23 23 C 1.37707 * 119.99025 * 0.02562 * 22 21 20 24 24 C 1.39274 * 120.20338 * 359.97438 * 23 22 21 25 25 S 1.75806 * 124.82537 * 180.02562 * 17 16 15 26 26 C 1.39825 * 119.82148 * 0.27695 * 13 12 11 27 27 C 1.37706 * 119.90821 * 359.46673 * 26 13 12 28 28 H 0.96998 * 120.00251 * 359.97438 * 1 2 3 29 29 H 1.07993 * 119.95763 * 0.02562 * 11 10 9 30 30 H 1.08003 * 120.04720 * 179.97438 * 12 11 10 31 31 H 1.07999 * 119.99749 * 0.02562 * 14 13 12 32 32 H 0.96997 * 120.00098 * 0.02562 * 16 15 14 33 33 H 1.08000 * 119.78494 * 0.25443 * 20 19 18 34 34 H 1.08001 * 119.69535 * 180.02562 * 21 20 19 35 35 H 1.08001 * 120.00392 * 180.02562 * 22 21 20 36 36 H 1.08005 * 119.90203 * 179.97438 * 23 22 21 37 37 H 1.08000 * 120.04059 * 179.72723 * 26 13 12 38 38 H 1.08005 * 119.95510 * 180.25756 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0463 -1.4001 5 1 1.4472 2.6526 0.7000 6 1 3.5473 1.4401 0.7001 7 6 2.0089 -1.2005 0.0005 8 1 1.4689 -2.1358 0.0005 9 8 3.3570 -1.2004 0.0000 10 6 3.9728 -2.4046 -0.1060 11 6 3.2185 -3.5730 -0.0915 12 6 3.8400 -4.7973 -0.1983 13 6 5.2311 -4.8646 -0.3221 14 6 5.9000 -6.1724 -0.4372 15 7 7.1927 -6.2332 -0.5468 16 7 7.8292 -7.4769 -0.6505 17 6 9.2026 -7.5416 -0.7664 18 7 9.9881 -6.5193 -0.7947 19 6 11.3116 -6.7444 -0.9084 20 6 12.3658 -5.8073 -0.9573 21 6 13.6652 -6.2291 -1.0822 22 6 13.9641 -7.5814 -1.1619 23 6 12.9519 -8.5140 -1.1163 24 6 11.6269 -8.1042 -0.9898 25 16 10.1296 -9.0291 -0.9047 26 6 5.9862 -3.6878 -0.3309 27 6 5.3567 -2.4673 -0.2289 28 1 -0.4850 0.8400 0.0004 29 1 2.1441 -3.5201 0.0037 30 1 3.2536 -5.7042 -0.1866 31 1 5.3156 -7.0806 -0.4265 32 1 7.3043 -8.2926 -0.6408 33 1 12.1481 -4.7513 -0.8963 34 1 14.4627 -5.5017 -1.1180 35 1 14.9906 -7.9027 -1.2596 36 1 13.1863 -9.5665 -1.1789 37 1 7.0613 -3.7359 -0.4219 38 1 5.9389 -1.5577 -0.2399 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016545399.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:38 Heat of formation + Delta-G solvation = 107.944148 kcal Electronic energy + Delta-G solvation = -23618.477476 eV Core-core repulsion = 19940.477196 eV Total energy + Delta-G solvation = -3678.000280 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 339.078 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -40.33031 -39.32354 -38.06934 -37.02540 -35.91842 -32.85394 -32.38196 -31.25089 -30.45923 -29.53500 -28.39756 -25.66344 -24.40740 -23.12805 -22.85919 -22.18140 -21.02723 -20.22979 -18.94761 -18.09557 -17.55436 -17.30489 -16.98287 -15.95030 -15.52711 -15.28201 -15.18789 -14.79852 -14.49836 -14.05844 -14.01582 -13.86750 -13.74958 -13.47796 -12.81164 -12.75234 -12.41338 -12.34042 -12.21123 -12.15656 -11.38677 -11.37120 -11.13847 -10.92217 -10.85036 -10.33680 -10.33304 -10.13963 -9.78393 -9.64873 -9.51993 -8.97572 -8.40929 -8.40386 -8.08668 -7.19318 -6.56615 -4.21329 0.32543 0.55471 0.91042 1.33796 1.34918 2.08423 2.29099 2.49117 2.86675 3.15796 3.19677 3.33364 3.54541 3.91897 4.12828 4.44194 4.44790 4.69458 4.70786 4.78356 4.92099 4.97865 5.04770 5.12695 5.33988 5.48507 5.61574 5.67272 5.82194 5.90243 5.95266 6.01485 6.15841 6.22158 6.43732 6.47959 6.53949 6.68307 6.95489 7.05470 7.12484 7.45500 7.55666 7.65395 7.87875 8.13086 8.77323 9.37654 10.49744 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.022891 B = 0.001846 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.903828 B =15165.133737 C =16373.747562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.066 3.934 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.391 4.391 8 H 0.110 0.890 9 O -0.205 6.205 10 C 0.176 3.824 11 C -0.229 4.229 12 C -0.035 4.035 13 C -0.163 4.163 14 C 0.147 3.853 15 N -0.251 5.251 16 N -0.542 5.542 17 C 0.404 3.596 18 N -0.513 5.513 19 C 0.132 3.868 20 C -0.083 4.083 21 C -0.098 4.098 22 C -0.125 4.125 23 C -0.061 4.061 24 C -0.192 4.192 25 S 0.035 5.965 26 C -0.026 4.026 27 C -0.201 4.201 28 H 0.282 0.718 29 H 0.138 0.862 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.397 0.603 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.374 -17.840 -1.935 27.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.182 1.182 7 C -0.466 4.466 8 H 0.128 0.872 9 O -0.107 6.107 10 C 0.121 3.879 11 C -0.249 4.249 12 C -0.056 4.056 13 C -0.167 4.167 14 C -0.062 4.062 15 N -0.058 5.058 16 N -0.268 5.268 17 C 0.027 3.973 18 N -0.236 5.236 19 C 0.012 3.988 20 C -0.105 4.105 21 C -0.119 4.119 22 C -0.146 4.146 23 C -0.084 4.084 24 C -0.312 4.312 25 S 0.282 5.718 26 C -0.046 4.046 27 C -0.220 4.220 28 H 0.092 0.908 29 H 0.156 0.844 30 H 0.134 0.866 31 H 0.127 0.873 32 H 0.238 0.762 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.146 0.854 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 21.529 -17.483 -1.942 27.802 hybrid contribution -0.364 0.179 0.012 0.405 sum 21.166 -17.304 -1.930 27.407 Atomic orbital electron populations 1.69645 1.05635 1.28878 1.46443 1.24518 0.95085 0.99075 0.95265 0.86166 0.80406 0.81147 0.79190 1.19667 1.20596 1.18168 1.20837 0.76688 0.96872 1.52189 0.87225 1.83550 1.22897 1.26148 1.78145 1.19350 0.91765 0.85373 0.91376 1.21158 1.01304 0.91518 1.10880 1.20837 0.92406 0.97145 0.95196 1.17792 0.92628 0.89699 1.16591 1.24457 0.90329 0.97695 0.93719 1.75255 1.11183 1.01972 1.17357 1.44643 1.01047 1.05399 1.75730 1.23224 0.88058 0.90313 0.95689 1.66267 1.01890 1.29460 1.25968 1.18950 0.88944 0.91046 0.99897 1.20681 0.90169 0.99006 1.00600 1.20937 0.95838 0.96126 0.98958 1.20999 0.98798 0.92828 1.02005 1.20241 0.89055 0.99913 0.99180 1.23386 0.97680 0.95928 1.14165 1.84856 0.98306 1.08416 1.80238 1.20915 0.99308 0.90561 0.93832 1.20197 0.91754 0.98157 1.11915 0.90756 0.84417 0.86587 0.87276 0.76214 0.84756 0.84945 0.85047 0.85591 0.85441 0.86070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.01 13.96 55.48 0.77 -23.24 16 2 C 0.07 1.76 5.49 -17.52 -0.10 1.66 16 3 Si 0.91 20.81 28.62 -169.99 -4.86 15.94 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 6 H -0.26 -5.96 7.11 56.52 0.40 -5.55 16 7 C -0.39 -10.43 9.94 30.87 0.31 -10.13 16 8 H 0.11 2.95 5.42 -52.49 -0.28 2.67 16 9 O -0.20 -5.14 8.58 0.38 0.00 -5.13 16 10 C 0.18 3.84 6.65 -38.96 -0.26 3.58 16 11 C -0.23 -4.53 9.15 -39.46 -0.36 -4.89 16 12 C -0.04 -0.57 9.78 -39.18 -0.38 -0.95 16 13 C -0.16 -2.59 5.87 -105.01 -0.62 -3.21 16 14 C 0.15 1.94 10.75 -14.68 -0.16 1.79 16 15 N -0.25 -3.69 10.38 32.15 0.33 -3.36 16 16 N -0.54 -6.63 6.40 30.47 0.20 -6.44 16 17 C 0.40 5.35 8.42 -88.88 -0.75 4.61 16 18 N -0.51 -7.87 10.40 -11.15 -0.12 -7.98 16 19 C 0.13 1.75 6.94 -84.90 -0.59 1.16 16 20 C -0.08 -0.90 10.10 -38.87 -0.39 -1.30 16 21 C -0.10 -0.79 9.99 -39.79 -0.40 -1.18 16 22 C -0.12 -0.92 10.05 -39.60 -0.40 -1.32 16 23 C -0.06 -0.53 10.06 -39.39 -0.40 -0.93 16 24 C -0.19 -2.17 6.52 -38.60 -0.25 -2.43 16 25 S 0.03 0.35 23.39 -107.50 -2.51 -2.16 16 26 C -0.03 -0.45 9.57 -39.18 -0.37 -0.82 16 27 C -0.20 -3.86 9.97 -39.46 -0.39 -4.26 16 28 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.14 2.83 5.62 -52.49 -0.29 2.53 16 30 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 31 H 0.11 1.05 8.02 -52.49 -0.42 0.63 16 32 H 0.40 3.43 8.77 -182.60 -1.60 1.83 16 33 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 35 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 36 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 37 H 0.13 2.13 7.55 -52.49 -0.40 1.74 16 38 H 0.12 2.19 8.06 -52.48 -0.42 1.77 16 LS Contribution 354.32 15.07 5.34 5.34 Total: -1.00 -30.90 354.32 -11.03 -41.92 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -4.67 Total: 3.71 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -5.51 Total: -18.61 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 1.19 Total: -41.01 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: 0.00 Total: -5.13 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.86 Total: 15.94 kcal Atomic # 16 Polarization: 0.35 SS G_CDS: -2.51 Total: -2.16 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.90 -11.03 -41.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016545399.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.868 kcal (2) G-P(sol) polarization free energy of solvation -30.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds