Wall clock time and date at job start Tue Mar 31 2020 06:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30764 * 1 3 3 Si 1.86791 * 120.00333 * 2 1 4 4 H 1.48500 * 109.47410 * 270.00202 * 3 2 1 5 5 H 1.48498 * 109.47265 * 30.00404 * 3 2 1 6 6 H 1.48502 * 109.46997 * 150.00069 * 3 2 1 7 7 C 1.39938 * 119.99587 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99824 * 179.97438 * 7 2 1 9 9 C 1.39697 * 119.99883 * 359.97438 * 7 2 1 10 10 O 1.22064 * 119.99804 * 0.02562 * 9 7 2 11 11 N 1.34780 * 119.99552 * 180.02562 * 9 7 2 12 12 C 1.37021 * 119.99379 * 180.02562 * 11 9 7 13 13 N 1.31646 * 126.00436 * 359.97241 * 12 11 9 14 14 N 1.26116 * 117.48660 * 180.02562 * 13 12 11 15 15 C 1.31799 * 117.43040 * 359.97438 * 14 13 12 16 16 S 1.76198 * 126.02182 * 180.02562 * 15 14 13 17 17 C 1.81005 * 99.99764 * 0.02562 * 16 15 14 18 18 C 1.50708 * 109.46934 * 180.02562 * 17 16 15 19 19 C 1.38233 * 119.97202 * 269.72332 * 18 17 16 20 20 C 1.38199 * 120.02370 * 179.72871 * 19 18 17 21 21 C 1.38461 * 119.97627 * 0.56851 * 20 19 18 22 22 F 1.35093 * 120.03251 * 179.68441 * 21 20 19 23 23 C 1.38461 * 119.94372 * 359.70558 * 21 20 19 24 24 C 1.38204 * 119.97455 * 359.97438 * 23 21 20 25 25 S 1.76418 * 125.99873 * 180.02562 * 12 11 9 26 26 H 0.97003 * 119.99541 * 359.97438 * 1 2 3 27 27 H 0.96988 * 120.00042 * 359.97438 * 11 9 7 28 28 H 1.09001 * 109.46619 * 299.99811 * 17 16 15 29 29 H 1.08992 * 109.47382 * 59.99744 * 17 16 15 30 30 H 1.08003 * 119.99168 * 359.97438 * 19 18 17 31 31 H 1.08003 * 120.01440 * 180.25518 * 20 19 18 32 32 H 1.08005 * 120.01268 * 179.97438 * 23 21 20 33 33 H 1.08005 * 119.98650 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2417 1.6176 0.0000 4 1 2.4892 2.0464 -1.4000 5 1 1.4393 2.6526 0.7001 6 1 3.5393 1.4399 0.7000 7 6 2.0072 -1.2120 -0.0005 8 1 3.0872 -1.2120 -0.0010 9 6 1.3086 -2.4217 -0.0005 10 8 0.0880 -2.4215 -0.0005 11 7 1.9825 -3.5889 -0.0005 12 6 1.2973 -4.7755 -0.0011 13 7 -0.0120 -4.9130 -0.0011 14 7 -0.4740 -6.0865 -0.0011 15 6 0.3921 -7.0800 -0.0017 16 16 -0.0012 -8.7975 -0.0025 17 6 -1.8089 -8.7059 -0.0031 18 6 -2.3825 -10.0996 -0.0032 19 6 -2.6502 -10.7361 -1.2007 20 6 -3.1710 -12.0162 -1.2021 21 6 -3.4355 -12.6568 -0.0034 22 9 -3.9505 -13.9057 -0.0034 23 6 -3.1722 -12.0160 1.1955 24 6 -2.6452 -10.7384 1.1943 25 16 2.0147 -6.3872 -0.0005 26 1 -0.4849 0.8401 0.0004 27 1 2.9524 -3.5890 -0.0009 28 1 -2.1460 -8.1747 0.8870 29 1 -2.1455 -8.1741 -0.8929 30 1 -2.4487 -10.2344 -2.1356 31 1 -3.3762 -12.5150 -2.1378 32 1 -3.3785 -12.5144 2.1311 33 1 -2.4394 -10.2385 2.1293 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016742024.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:40 Heat of formation + Delta-G solvation = 8.670143 kcal Electronic energy + Delta-G solvation = -22030.101739 eV Core-core repulsion = 18223.947167 eV Total energy + Delta-G solvation = -3806.154572 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 339.025 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -49.19912 -40.07989 -39.44345 -37.99853 -34.11212 -32.84296 -32.60089 -31.48935 -29.89469 -27.51689 -26.89398 -25.27415 -23.40591 -22.18688 -21.91713 -19.67588 -19.15351 -18.01944 -17.57332 -16.87849 -16.71954 -16.07735 -15.92282 -15.67720 -15.54651 -15.21593 -14.55038 -14.26814 -14.11275 -13.86388 -13.81944 -13.17722 -13.01155 -12.79314 -12.71488 -12.42272 -12.02875 -11.54930 -11.36604 -11.31714 -11.00501 -10.86823 -10.58259 -10.48555 -10.21252 -9.57663 -9.50975 -9.45265 -9.12679 -8.84124 -8.32056 -7.92399 -7.15679 -6.57608 -5.17524 0.46124 0.89139 0.93600 1.00305 1.54332 1.82116 2.15393 2.94159 3.02180 3.06187 3.19524 3.32054 3.78326 3.92187 4.08270 4.23134 4.29173 4.35328 4.55979 4.82079 4.92932 5.21159 5.40653 5.46261 5.50142 5.57390 5.59985 5.72670 5.77539 5.86952 6.14078 6.52210 7.00846 7.11310 7.54993 7.73340 8.55740 8.78947 9.28466 10.14658 10.33421 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.035355 B = 0.001973 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.785434 B =14185.859512 C =14672.722449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.733 5.733 2 C 0.084 3.916 3 Si 0.921 3.079 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.524 4.524 8 H 0.075 0.925 9 C 0.521 3.479 10 O -0.515 6.515 11 N -0.620 5.620 12 C 0.308 3.692 13 N -0.275 5.275 14 N -0.217 5.217 15 C -0.080 4.080 16 S 0.002 5.998 17 C -0.067 4.067 18 C -0.085 4.085 19 C -0.071 4.071 20 C -0.153 4.153 21 C 0.100 3.900 22 F -0.141 7.141 23 C -0.153 4.153 24 C -0.071 4.071 25 S 0.046 5.954 26 H 0.278 0.722 27 H 0.407 0.593 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.097 -19.791 -0.009 19.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C -0.141 4.141 3 Si 0.744 3.256 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.559 4.559 8 H 0.093 0.907 9 C 0.329 3.671 10 O -0.392 6.392 11 N -0.269 5.269 12 C -0.064 4.064 13 N -0.125 5.125 14 N -0.060 5.060 15 C -0.469 4.469 16 S 0.233 5.767 17 C -0.216 4.216 18 C -0.087 4.087 19 C -0.091 4.091 20 C -0.172 4.172 21 C 0.080 3.920 22 F -0.119 7.119 23 C -0.172 4.172 24 C -0.091 4.091 25 S 0.281 5.719 26 H 0.089 0.911 27 H 0.243 0.757 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.156 0.844 31 H 0.155 0.845 32 H 0.155 0.845 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.675 -20.274 -0.003 20.285 hybrid contribution 0.209 1.684 -0.007 1.697 sum -0.466 -18.590 -0.010 18.596 Atomic orbital electron populations 1.70073 1.07345 1.28544 1.30016 1.25790 0.94804 1.00980 0.92575 0.86136 0.80072 0.80094 0.79262 1.19278 1.19990 1.18500 1.19543 0.94788 0.89610 1.51965 0.90682 1.17004 0.88439 0.81137 0.80477 1.90914 1.12481 1.83582 1.52255 1.44390 1.10004 1.02208 1.70302 1.27637 0.91105 0.91186 0.96506 1.72259 1.05694 1.10291 1.24264 1.72234 1.28939 0.93190 1.11634 1.30692 0.93373 1.04183 1.18692 1.85412 1.04757 0.93441 1.93124 1.22457 0.94204 0.96361 1.08603 1.19384 1.00610 0.94959 0.93719 1.20994 0.96259 0.93589 0.98251 1.21143 1.02700 0.96095 0.97274 1.17781 0.98868 0.80563 0.94795 1.91502 1.84436 1.38538 1.97451 1.21144 1.02654 0.96141 0.97273 1.20998 0.96233 0.93611 0.98254 1.85266 1.08803 1.01460 1.76365 0.91095 0.75745 0.87427 0.87423 0.84394 0.84467 0.84466 0.84392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.50 11.68 55.54 0.65 -19.85 16 2 C 0.08 2.14 5.49 -17.37 -0.10 2.04 16 3 Si 0.92 18.30 29.56 -169.99 -5.02 13.28 16 4 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 6 H -0.26 -4.98 7.11 56.52 0.40 -4.57 16 7 C -0.52 -13.45 9.20 -38.40 -0.35 -13.80 16 8 H 0.07 1.69 7.84 -52.49 -0.41 1.27 16 9 C 0.52 14.09 7.45 -15.71 -0.12 13.97 16 10 O -0.52 -16.27 13.47 4.86 0.07 -16.21 16 11 N -0.62 -13.48 5.31 -14.88 -0.08 -13.56 16 12 C 0.31 6.63 8.35 -87.58 -0.73 5.90 16 13 N -0.28 -6.72 9.79 30.88 0.30 -6.42 16 14 N -0.22 -4.54 11.03 31.55 0.35 -4.19 16 15 C -0.08 -1.37 7.87 52.75 0.42 -0.95 16 16 S 0.00 0.03 22.29 -107.50 -2.40 -2.36 16 17 C -0.07 -0.75 5.34 36.01 0.19 -0.56 16 18 C -0.08 -0.80 5.14 -104.62 -0.54 -1.34 16 19 C -0.07 -0.61 9.70 -39.60 -0.38 -0.99 16 20 C -0.15 -1.27 10.03 -39.51 -0.40 -1.66 16 21 C 0.10 0.91 7.30 -39.42 -0.29 0.62 16 22 F -0.14 -1.38 17.27 2.25 0.04 -1.34 16 23 C -0.15 -1.27 10.03 -39.51 -0.40 -1.66 16 24 C -0.07 -0.61 9.70 -39.59 -0.38 -0.99 16 25 S 0.05 0.75 23.51 -107.50 -2.53 -1.78 16 26 H 0.28 6.97 8.29 -40.82 -0.34 6.63 16 27 H 0.41 7.01 8.76 -40.82 -0.36 6.65 16 28 H 0.11 1.26 8.08 -51.92 -0.42 0.84 16 29 H 0.11 1.26 8.08 -51.92 -0.42 0.84 16 30 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 31 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 32 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 33 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 LS Contribution 334.13 15.07 5.04 5.04 Total: -1.00 -33.80 334.13 -9.10 -42.90 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -2.43 Total: 3.93 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -3.08 Total: 0.56 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: 1.22 Total: -44.01 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: 0.07 Total: -16.21 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.02 Total: 13.28 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -4.92 Total: -4.14 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.80 -9.10 -42.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016742024.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.569 kcal (2) G-P(sol) polarization free energy of solvation -33.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds