Wall clock time and date at job start Tue Mar 31 2020 05:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30173 * 126.81000 * 2 1 4 4 O 1.20914 * 111.61183 * 180.25550 * 3 2 1 5 5 C 1.34042 * 111.56583 * 359.74482 * 4 3 2 6 6 C 1.50701 * 126.77953 * 180.02562 * 5 4 3 7 7 C 1.35454 * 106.44740 * 0.02562 * 5 4 3 8 8 S 1.76196 * 128.00933 * 179.97438 * 7 5 4 9 9 O 1.42094 * 106.40480 * 343.26135 * 8 7 5 10 10 O 1.42100 * 106.40142 * 210.33567 * 8 7 5 11 11 N 1.65607 * 107.21756 * 96.79874 * 8 7 5 12 12 C 1.39779 * 119.99902 * 295.65106 * 11 8 7 13 13 C 1.38946 * 120.00883 * 133.96692 * 12 11 8 14 14 C 1.38016 * 119.99777 * 180.02562 * 13 12 11 15 15 C 1.38896 * 120.00135 * 0.02562 * 14 13 12 16 16 O 1.35802 * 119.98941 * 179.97438 * 15 14 13 17 17 C 1.34807 * 116.99991 * 5.40491 * 16 15 14 18 18 H 1.07994 * 120.00392 * 354.92639 * 17 16 15 19 19 C 1.38630 * 119.99745 * 174.92904 * 17 16 15 20 20 N 1.31575 * 120.00160 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99700 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47155 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.46780 * 120.00011 * 21 19 17 24 24 H 1.48495 * 109.46879 * 239.99812 * 21 19 17 25 25 C 1.38898 * 120.01750 * 0.25814 * 15 14 13 26 26 C 1.38014 * 120.00181 * 359.44419 * 25 15 14 27 27 H 1.09000 * 109.46880 * 270.16682 * 1 2 3 28 28 H 1.08997 * 109.46881 * 30.16123 * 1 2 3 29 29 H 1.08994 * 109.47273 * 150.16629 * 1 2 3 30 30 H 1.08994 * 109.47233 * 270.00006 * 6 5 4 31 31 H 1.08996 * 109.46911 * 30.00105 * 6 5 4 32 32 H 1.09007 * 109.47293 * 149.99493 * 6 5 4 33 33 H 0.96993 * 120.00197 * 115.65127 * 11 8 7 34 34 H 1.08000 * 120.00093 * 359.97438 * 13 12 11 35 35 H 1.07997 * 119.99771 * 180.02562 * 14 13 12 36 36 H 0.96994 * 120.00439 * 180.02562 * 20 19 17 37 37 H 1.08001 * 120.00227 * 179.70669 * 25 15 14 38 38 H 1.07999 * 120.00101 * 180.27606 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2870 1.0422 0.0000 4 8 3.4538 0.7252 -0.0050 5 6 3.6025 -0.6069 -0.0036 6 6 4.9021 -1.3698 -0.0079 7 6 2.3539 -1.1322 0.0026 8 16 1.8922 -2.8325 0.0067 9 8 3.0449 -3.5624 -0.3902 10 8 0.6485 -2.9122 -0.6762 11 7 1.5900 -3.2547 1.5793 12 6 2.6229 -3.2286 2.5207 13 6 2.4146 -2.6460 3.7648 14 6 3.4348 -2.6199 4.6940 15 6 4.6698 -3.1756 4.3853 16 8 5.6736 -3.1494 5.2996 17 6 5.3739 -2.6715 6.5239 18 1 4.3960 -2.2558 6.7169 19 6 6.3210 -2.7137 7.5354 20 7 7.5123 -3.2205 7.3004 21 14 5.9055 -2.0521 9.2322 22 1 4.5113 -1.5409 9.2364 23 1 6.0371 -3.1407 10.2337 24 1 6.8379 -0.9485 9.5751 25 6 4.8801 -3.7529 3.1396 26 6 3.8584 -3.7847 2.2123 27 1 -0.3633 0.0030 1.0277 28 1 -0.3633 0.8885 -0.5163 29 1 -0.3633 -0.8914 -0.5112 30 1 5.2111 -1.5553 -1.0366 31 1 5.6681 -0.7854 0.5017 32 1 4.7672 -2.3205 0.5081 33 1 0.6963 -3.5200 1.8471 34 1 1.4548 -2.2128 4.0044 35 1 3.2728 -2.1675 5.6611 36 1 8.1749 -3.2504 8.0081 37 1 5.8419 -4.1807 2.8981 38 1 4.0206 -4.2375 1.2453 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000018895643.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:13 Heat of formation + Delta-G solvation = -11.966933 kcal Electronic energy + Delta-G solvation = -27307.130855 eV Core-core repulsion = 23246.214737 eV Total energy + Delta-G solvation = -4060.916118 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.081 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.17467 -39.33893 -37.59815 -37.04584 -36.01100 -35.11367 -34.00751 -33.69146 -32.28281 -30.42699 -28.92572 -28.04473 -27.64324 -25.41376 -24.02819 -22.32849 -21.58265 -20.71182 -19.65687 -18.48868 -18.01534 -17.98193 -17.46085 -17.24195 -16.60846 -16.26797 -15.23415 -14.76276 -14.57803 -14.32237 -13.88694 -13.80623 -13.67162 -13.61116 -13.32967 -13.10541 -13.01790 -12.89640 -12.66022 -12.58879 -12.20222 -12.15714 -11.90563 -11.68085 -11.60880 -11.37518 -11.25209 -11.16612 -10.75268 -10.60014 -10.52080 -10.08000 -9.70565 -9.45897 -8.91070 -8.42739 -7.23235 -6.58726 -4.16526 0.23593 0.95971 1.70514 1.98186 2.06012 2.75544 3.01511 3.04331 3.06308 3.11727 3.58013 3.76733 3.85494 4.07397 4.28952 4.32799 4.81917 4.94725 4.98543 5.14806 5.23752 5.28566 5.29844 5.37245 5.37637 5.48912 5.60787 5.64731 5.87977 5.89829 6.01105 6.18685 6.41067 6.62890 6.78671 6.92268 7.10191 7.14770 7.27079 7.62663 7.85305 7.94657 8.86505 9.53265 10.58437 Molecular weight = 338.08amu Principal moments of inertia in cm(-1) A = 0.016950 B = 0.003350 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.507616 B = 8356.649620 C = 8668.268810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.107 3.893 3 N -0.367 5.367 4 O 0.096 5.904 5 C 0.127 3.873 6 C -0.110 4.110 7 C -0.795 4.795 8 S 2.724 3.276 9 O -0.946 6.946 10 O -0.959 6.959 11 N -1.038 6.038 12 C 0.025 3.975 13 C -0.071 4.071 14 C -0.222 4.222 15 C 0.151 3.849 16 O -0.170 6.170 17 C -0.393 4.393 18 H 0.094 0.906 19 C 0.041 3.959 20 N -0.856 5.856 21 Si 0.942 3.058 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.174 4.174 26 C -0.103 4.103 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.119 0.881 33 H 0.419 0.581 34 H 0.112 0.888 35 H 0.132 0.868 36 H 0.272 0.728 37 H 0.127 0.873 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.202 2.877 -12.034 16.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.055 4.055 3 N -0.076 5.076 4 O 0.039 5.961 5 C 0.060 3.940 6 C -0.167 4.167 7 C -0.883 4.883 8 S 2.810 3.190 9 O -0.936 6.936 10 O -0.949 6.949 11 N -0.792 5.792 12 C -0.070 4.070 13 C -0.093 4.093 14 C -0.242 4.242 15 C 0.096 3.904 16 O -0.072 6.072 17 C -0.469 4.469 18 H 0.112 0.888 19 C -0.164 4.164 20 N -0.490 5.490 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.200 1.200 24 H -0.200 1.200 25 C -0.194 4.194 26 C -0.124 4.124 27 H 0.107 0.893 28 H 0.103 0.897 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.118 0.882 32 H 0.137 0.863 33 H 0.256 0.744 34 H 0.130 0.870 35 H 0.150 0.850 36 H 0.082 0.918 37 H 0.145 0.855 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.816 3.691 -12.742 16.502 hybrid contribution -0.655 0.301 1.475 1.642 sum -10.471 3.992 -11.266 15.890 Atomic orbital electron populations 1.20600 0.85167 1.05767 1.04454 1.23054 0.98657 0.86179 0.97607 1.73803 0.88935 1.23649 1.21205 1.84855 1.22161 1.22621 1.66494 1.24634 0.97255 0.83672 0.88418 1.21081 0.89409 1.00294 1.05894 1.32828 1.00047 1.26578 1.28856 1.01348 0.73417 0.72111 0.72091 1.93544 1.51097 1.68295 1.80669 1.93542 1.43522 1.86464 1.71408 1.52730 1.18102 1.80724 1.27602 1.16877 0.88771 1.09528 0.91829 1.20724 0.98481 0.97242 0.92815 1.21071 0.93708 1.08083 1.01373 1.19475 0.87875 0.92664 0.90375 1.83989 1.31497 1.71407 1.20312 1.21399 1.01087 1.40087 0.84350 0.88840 1.25315 0.94833 0.96734 0.99519 1.70043 1.04058 1.41033 1.33872 0.85637 0.78882 0.78625 0.80250 1.19056 1.20005 1.20043 1.20140 1.00180 1.06623 0.92433 1.21354 0.92056 0.98320 1.00620 0.89308 0.89675 0.87631 0.87386 0.88222 0.86256 0.74420 0.86959 0.85021 0.91841 0.85550 0.83403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.05 10.33 36.01 0.37 -0.68 16 2 C 0.11 1.45 7.32 -82.10 -0.60 0.85 16 3 N -0.37 -5.41 12.07 33.42 0.40 -5.01 16 4 O 0.10 1.35 11.20 17.17 0.19 1.55 16 5 C 0.13 1.66 7.49 -35.30 -0.26 1.40 16 6 C -0.11 -1.19 9.66 36.01 0.35 -0.84 16 7 C -0.80 -10.66 6.29 -39.38 -0.25 -10.91 16 8 S 2.72 35.10 5.78 -107.50 -0.62 34.48 16 9 O -0.95 -13.36 12.90 -57.17 -0.74 -14.10 16 10 O -0.96 -13.29 16.09 -57.17 -0.92 -14.21 16 11 N -1.04 -12.72 5.77 32.45 0.19 -12.53 16 12 C 0.02 0.38 6.19 -83.71 -0.52 -0.14 16 13 C -0.07 -1.15 9.96 -39.40 -0.39 -1.54 16 14 C -0.22 -4.32 9.16 -39.42 -0.36 -4.69 16 15 C 0.15 3.30 6.65 -39.09 -0.26 3.04 16 16 O -0.17 -4.47 9.76 -0.05 0.00 -4.47 16 17 C -0.39 -10.26 9.48 30.88 0.29 -9.97 16 18 H 0.09 2.25 5.20 -52.49 -0.27 1.97 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -23.81 13.67 55.48 0.76 -23.05 16 21 Si 0.94 19.45 29.55 -169.99 -5.02 14.43 16 22 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 23 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 25 C -0.17 -3.25 9.98 -39.42 -0.39 -3.65 16 26 C -0.10 -1.66 7.35 -39.40 -0.29 -1.95 16 27 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.11 1.06 6.27 -51.93 -0.33 0.74 16 30 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.12 1.44 4.55 -51.92 -0.24 1.20 16 33 H 0.42 4.00 8.95 -34.48 -0.31 3.69 16 34 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 35 H 0.13 2.58 5.63 -52.49 -0.30 2.29 16 36 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 38 H 0.15 2.21 5.44 -52.49 -0.29 1.92 16 LS Contribution 336.51 15.07 5.07 5.07 Total: -1.00 -31.73 336.51 -6.50 -38.23 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -3.40 Total: 7.72 kcal Atomic # 6 Polarization: -25.69 SS G_CDS: -2.41 Total: -28.11 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 1.35 Total: -40.59 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -1.47 Total: -31.24 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Atomic # 16 Polarization: 35.10 SS G_CDS: -0.62 Total: 34.48 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.73 -6.50 -38.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018895643.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.260 kcal (2) G-P(sol) polarization free energy of solvation -31.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds