Wall clock time and date at job start Tue Mar 31 2020 08:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86807 * 119.99728 * 2 1 4 4 H 1.48499 * 109.46761 * 269.04201 * 3 2 1 5 5 H 1.48501 * 109.46933 * 29.03830 * 3 2 1 6 6 H 1.48495 * 109.47082 * 149.04110 * 3 2 1 7 7 C 1.38808 * 120.00181 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00235 * 345.37954 * 7 2 1 9 9 N 1.36937 * 119.99866 * 165.38014 * 7 2 1 10 10 C 1.47080 * 120.88412 * 151.71656 * 9 7 2 11 11 C 1.53235 * 108.52453 * 128.78883 * 10 9 7 12 12 N 1.46900 * 109.33891 * 53.83317 * 11 10 9 13 13 C 1.46900 * 111.00285 * 172.74567 * 12 11 10 14 14 C 1.50701 * 109.46986 * 65.68963 * 13 12 11 15 15 O 1.21287 * 120.00214 * 353.43329 * 14 13 12 16 16 N 1.34778 * 120.00150 * 173.42794 * 14 13 12 17 17 C 1.39607 * 120.00226 * 174.54671 * 16 14 13 18 18 C 1.37831 * 120.29935 * 340.22981 * 17 16 14 19 19 C 1.39159 * 120.75072 * 179.72487 * 18 17 16 20 20 C 1.36164 * 121.08181 * 0.58206 * 19 18 17 21 21 C 1.40506 * 119.95447 * 359.70025 * 20 19 18 22 22 C 1.40577 * 121.20349 * 180.02562 * 21 20 19 23 23 C 1.36097 * 119.66292 * 179.97438 * 22 21 20 24 24 C 1.39346 * 120.97672 * 0.02562 * 23 22 21 25 25 C 1.36152 * 120.96061 * 359.93368 * 24 23 22 26 26 C 1.40371 * 119.67414 * 0.08028 * 25 24 23 27 27 C 1.46906 * 111.26888 * 296.89280 * 12 11 10 28 28 C 1.47085 * 120.88038 * 331.68633 * 9 7 2 29 29 H 0.96999 * 120.00169 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.62626 * 9.07840 * 10 9 7 31 31 H 1.09003 * 109.78733 * 248.59526 * 10 9 7 32 32 H 1.09000 * 109.49274 * 173.78865 * 11 10 9 33 33 H 1.08997 * 109.49550 * 293.87289 * 11 10 9 34 34 H 1.08996 * 109.47613 * 185.69115 * 13 12 11 35 35 H 1.09000 * 109.46997 * 305.69423 * 13 12 11 36 36 H 0.96998 * 119.99504 * 354.55395 * 16 14 13 37 37 H 1.07998 * 119.62096 * 0.02562 * 18 17 16 38 38 H 1.08001 * 119.45330 * 180.28670 * 19 18 17 39 39 H 1.08004 * 120.02107 * 179.68334 * 20 19 18 40 40 H 1.08001 * 120.16740 * 359.96182 * 22 21 20 41 41 H 1.07995 * 119.51170 * 180.02562 * 23 22 21 42 42 H 1.08000 * 119.52324 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.16416 * 180.02562 * 25 24 23 44 44 H 1.08999 * 109.49098 * 303.14869 * 27 12 11 45 45 H 1.08995 * 109.51258 * 183.07773 * 27 12 11 46 46 H 1.08993 * 109.62778 * 350.92144 * 28 9 7 47 47 H 1.09009 * 109.62560 * 111.50116 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5179 2.0348 -1.3999 5 1 1.4375 2.6585 0.6796 6 1 3.5374 1.4463 0.7202 7 6 2.0103 -1.2021 0.0005 8 1 1.4966 -2.1222 0.2370 9 7 3.3464 -1.2213 -0.2988 10 6 4.2294 -2.2587 0.2557 11 6 5.0193 -2.8916 -0.8949 12 7 5.7021 -1.8359 -1.6547 13 6 6.6062 -2.4113 -2.6594 14 6 5.7997 -3.1469 -3.6984 15 8 4.6047 -3.2902 -3.5490 16 7 6.4064 -3.6454 -4.7939 17 6 5.6829 -4.4238 -5.6992 18 6 4.5045 -5.0252 -5.3127 19 6 3.7728 -5.7984 -6.2090 20 6 4.2046 -5.9920 -7.4858 21 6 5.4039 -5.4012 -7.9180 22 6 5.8739 -5.5832 -9.2303 23 6 7.0395 -4.9959 -9.6158 24 6 7.7771 -4.2151 -8.7281 25 6 7.3519 -4.0165 -7.4501 26 6 6.1544 -4.6067 -7.0164 27 6 4.7379 -0.9192 -2.2777 28 6 3.9365 -0.2055 -1.1838 29 1 -0.4850 0.8400 -0.0004 30 1 3.6305 -3.0222 0.7522 31 1 4.9196 -1.8119 0.9714 32 1 5.7574 -3.5847 -0.4913 33 1 4.3362 -3.4293 -1.5525 34 1 7.1731 -1.6127 -3.1379 35 1 7.2935 -3.1048 -2.1749 36 1 7.3457 -3.4634 -4.9531 37 1 4.1424 -4.8908 -4.3041 38 1 2.8498 -6.2562 -5.8852 39 1 3.6258 -6.5996 -8.1657 40 1 5.3130 -6.1863 -9.9289 41 1 7.3981 -5.1370 -10.6247 42 1 8.6991 -3.7603 -9.0589 43 1 7.9335 -3.4085 -6.7729 44 1 4.0588 -1.4844 -2.9160 45 1 5.2717 -0.1819 -2.8773 46 1 3.1440 0.3884 -1.6390 47 1 4.5984 0.4417 -0.6082 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019376388.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:30 Heat of formation + Delta-G solvation = 70.323115 kcal Electronic energy + Delta-G solvation = -29257.029229 eV Core-core repulsion = 25406.310896 eV Total energy + Delta-G solvation = -3850.718332 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.26857 -39.99151 -37.90993 -36.48832 -35.25611 -34.35456 -32.03064 -31.47984 -30.48979 -30.38327 -29.35118 -27.98417 -25.19948 -23.67616 -23.41357 -23.23001 -22.57628 -21.77674 -20.48965 -19.55442 -18.28008 -18.06663 -16.84741 -16.65436 -16.25175 -16.01071 -15.70304 -15.27820 -14.72419 -14.57759 -14.31049 -14.24622 -14.04735 -13.97621 -13.77276 -13.64707 -13.60686 -12.93584 -12.44615 -12.39185 -12.31339 -12.10965 -11.76313 -11.75385 -11.53220 -11.41964 -11.21429 -10.98137 -10.84000 -10.42601 -10.24123 -10.11158 -9.96286 -9.71434 -9.50755 -9.36074 -8.81681 -8.60650 -7.90905 -7.65854 -6.83980 -5.84924 -3.24007 0.31005 0.81380 1.71609 2.45634 2.79338 2.88986 3.36512 3.52738 3.56307 3.93141 4.10301 4.37445 4.49659 4.59483 4.59623 4.62441 4.78491 4.98617 5.03744 5.04956 5.07077 5.17219 5.25991 5.29472 5.42452 5.48503 5.63157 5.64002 5.69413 5.85149 5.91066 6.00003 6.07074 6.17355 6.20915 6.21704 6.23476 6.26261 6.33115 6.45108 6.47494 6.60984 6.63534 6.74711 6.89523 7.00156 7.09234 7.32469 7.39463 7.96796 8.04882 8.41981 9.01415 9.79937 10.19643 11.31583 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018382 B = 0.002691 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.868312 B =10403.981743 C =10798.167599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.018 3.982 3 Si 0.893 3.107 4 H -0.290 1.290 5 H -0.306 1.306 6 H -0.269 1.269 7 C -0.253 4.253 8 H 0.085 0.915 9 N -0.607 5.607 10 C 0.156 3.844 11 C 0.025 3.975 12 N -0.507 5.507 13 C 0.037 3.963 14 C 0.473 3.527 15 O -0.491 6.491 16 N -0.669 5.669 17 C 0.159 3.841 18 C -0.144 4.144 19 C -0.084 4.084 20 C -0.138 4.138 21 C -0.033 4.033 22 C -0.105 4.105 23 C -0.118 4.118 24 C -0.121 4.121 25 C -0.106 4.106 26 C -0.071 4.071 27 C 0.025 3.975 28 C 0.128 3.872 29 H 0.262 0.738 30 H 0.064 0.936 31 H 0.027 0.973 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.408 0.592 37 H 0.157 0.843 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.074 0.926 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.319 -11.513 -17.557 28.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.180 4.180 3 Si 0.725 3.275 4 H -0.218 1.218 5 H -0.235 1.235 6 H -0.194 1.194 7 C -0.381 4.381 8 H 0.103 0.897 9 N -0.331 5.331 10 C 0.029 3.971 11 C -0.104 4.104 12 N -0.229 5.229 13 C -0.095 4.095 14 C 0.260 3.740 15 O -0.364 6.364 16 N -0.314 5.314 17 C 0.063 3.937 18 C -0.164 4.164 19 C -0.102 4.102 20 C -0.157 4.157 21 C -0.033 4.033 22 C -0.123 4.123 23 C -0.136 4.136 24 C -0.139 4.139 25 C -0.124 4.124 26 C -0.073 4.073 27 C -0.104 4.104 28 C 0.002 3.998 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.244 0.756 37 H 0.175 0.825 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.092 0.908 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 18.583 -11.179 -16.943 27.520 hybrid contribution 0.475 0.650 -0.897 1.205 sum 19.058 -10.530 -17.840 28.149 Atomic orbital electron populations 1.69781 1.05626 1.26382 1.54270 1.25301 0.95325 0.97671 0.99699 0.86865 0.79533 0.84178 0.76950 1.21771 1.23461 1.19389 1.18945 0.82207 0.94307 1.42657 0.89720 1.44334 1.05729 1.30707 1.52316 1.20956 0.91952 0.91601 0.92569 1.22901 0.97234 0.92941 0.97305 1.62425 1.21498 1.17472 1.21501 1.22485 0.96796 0.98930 0.91316 1.22947 0.89523 0.79006 0.82530 1.90669 1.14862 1.55295 1.75589 1.43865 1.13985 1.50445 1.23097 1.17784 0.94110 0.93600 0.88246 1.21683 0.94889 0.97291 1.02578 1.20827 0.99321 0.96858 0.93233 1.20944 0.96037 1.01834 0.96873 1.17887 0.94878 0.97116 0.93459 1.21036 0.96639 0.99941 0.94729 1.20834 0.95328 0.97710 0.99706 1.20772 1.00140 0.99286 0.93687 1.20784 0.95358 0.99595 0.96709 1.17776 0.96615 1.00865 0.92054 1.22916 0.94285 0.95230 0.97925 1.21491 0.95465 0.91962 0.90854 0.92864 0.91709 0.95466 0.92133 0.91691 0.87995 0.87521 0.75623 0.82540 0.85525 0.85656 0.85482 0.86026 0.85995 0.86209 0.91426 0.92368 0.90793 0.95021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.16 13.97 55.49 0.78 -28.39 16 2 C 0.02 0.54 5.34 -17.43 -0.09 0.45 16 3 Si 0.89 23.37 24.21 -169.99 -4.12 19.26 16 4 H -0.29 -7.30 6.51 56.52 0.37 -6.93 16 5 H -0.31 -8.11 7.11 56.52 0.40 -7.71 16 6 H -0.27 -6.89 6.35 56.52 0.36 -6.53 16 7 C -0.25 -7.39 10.11 -15.06 -0.15 -7.55 16 8 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 9 N -0.61 -15.24 2.83 -172.01 -0.49 -15.73 16 10 C 0.16 3.23 6.69 -3.60 -0.02 3.21 16 11 C 0.02 0.44 5.22 -3.70 -0.02 0.42 16 12 N -0.51 -8.26 4.83 -235.77 -1.14 -9.39 16 13 C 0.04 0.42 5.85 -4.98 -0.03 0.39 16 14 C 0.47 6.18 7.07 -10.98 -0.08 6.10 16 15 O -0.49 -8.59 8.59 5.55 0.05 -8.54 16 16 N -0.67 -6.99 5.24 -9.64 -0.05 -7.04 16 17 C 0.16 1.97 6.52 -83.38 -0.54 1.43 16 18 C -0.14 -1.98 8.77 -39.39 -0.35 -2.33 16 19 C -0.08 -1.00 9.94 -39.99 -0.40 -1.39 16 20 C -0.14 -1.46 9.75 -39.47 -0.38 -1.85 16 21 C -0.03 -0.36 5.74 -106.85 -0.61 -0.97 16 22 C -0.11 -0.92 9.77 -39.47 -0.39 -1.31 16 23 C -0.12 -0.92 9.95 -39.94 -0.40 -1.31 16 24 C -0.12 -0.95 9.95 -39.92 -0.40 -1.34 16 25 C -0.11 -0.95 9.47 -39.53 -0.37 -1.32 16 26 C -0.07 -0.80 5.75 -106.70 -0.61 -1.42 16 27 C 0.03 0.49 5.11 -3.70 -0.02 0.47 16 28 C 0.13 2.97 4.30 -3.60 -0.02 2.95 16 29 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 30 H 0.06 1.33 7.95 -51.93 -0.41 0.92 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.88 8.04 -51.93 -0.42 0.46 16 33 H 0.06 1.28 5.79 -51.93 -0.30 0.98 16 34 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.11 0.94 8.05 -51.93 -0.42 0.52 16 36 H 0.41 2.78 7.08 -40.82 -0.29 2.49 16 37 H 0.16 2.49 5.38 -52.49 -0.28 2.20 16 38 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 39 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 40 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 41 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.12 0.77 6.61 -52.49 -0.35 0.42 16 44 H 0.07 1.46 5.69 -51.93 -0.30 1.16 16 45 H 0.06 0.97 8.11 -51.93 -0.42 0.55 16 46 H 0.07 1.87 4.37 -51.93 -0.23 1.64 16 47 H 0.03 0.74 6.74 -51.92 -0.35 0.39 16 LS Contribution 361.67 15.07 5.45 5.45 Total: -1.00 -35.72 361.67 -10.75 -46.47 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -6.36 Total: 3.29 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -4.88 Total: -5.38 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: -0.90 Total: -60.55 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.05 Total: -8.54 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -4.12 Total: 19.26 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.72 -10.75 -46.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019376388.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.794 kcal (2) G-P(sol) polarization free energy of solvation -35.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds