Wall clock time and date at job start Tue Mar 31 2020 06:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 120.00269 * 2 1 4 4 C 1.50696 * 109.47151 * 275.00258 * 3 2 1 5 5 H 1.08004 * 120.00251 * 359.97438 * 4 3 2 6 6 C 1.37883 * 119.99915 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99886 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99828 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.47339 * 59.99930 * 8 6 4 10 10 H 1.48504 * 109.46835 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46958 * 299.99633 * 8 6 4 12 12 S 1.65598 * 119.99678 * 180.02562 * 2 1 3 13 13 O 1.42098 * 106.40228 * 156.46439 * 12 2 1 14 14 O 1.42100 * 106.40658 * 23.54049 * 12 2 1 15 15 C 1.76199 * 107.21605 * 270.00203 * 12 2 1 16 16 C 1.38445 * 119.86225 * 90.00364 * 15 12 2 17 17 C 1.38098 * 120.28238 * 180.02562 * 16 15 12 18 18 C 1.38660 * 119.85442 * 359.97438 * 17 16 15 19 19 C 1.39630 * 119.86610 * 0.02562 * 18 17 16 20 20 C 1.38106 * 119.85749 * 269.97630 * 15 12 2 21 21 N 1.39290 * 106.79747 * 179.97438 * 19 18 17 22 22 C 1.46497 * 125.81721 * 179.97438 * 21 19 18 23 23 C 1.34639 * 108.36534 * 359.97438 * 21 19 18 24 24 O 1.21686 * 125.16447 * 179.97438 * 23 21 19 25 25 N 1.34638 * 109.67607 * 0.02562 * 23 21 19 26 26 C 1.46505 * 125.82022 * 180.26462 * 25 23 21 27 27 H 1.08996 * 109.47356 * 269.99986 * 1 2 3 28 28 H 1.09000 * 109.46729 * 30.00022 * 1 2 3 29 29 H 1.09001 * 109.47188 * 149.99290 * 1 2 3 30 30 H 1.09004 * 109.46509 * 35.00115 * 3 2 1 31 31 H 1.08997 * 109.46958 * 154.99703 * 3 2 1 32 32 H 0.97001 * 119.99825 * 180.02562 * 7 6 4 33 33 H 1.08002 * 119.85547 * 359.97438 * 16 15 12 34 34 H 1.08003 * 120.07369 * 179.97438 * 17 16 15 35 35 H 1.07999 * 120.07426 * 0.02562 * 20 15 12 36 36 H 1.09003 * 109.46790 * 89.99821 * 22 21 19 37 37 H 1.08997 * 109.47416 * 209.99753 * 22 21 19 38 38 H 1.09001 * 109.47348 * 330.00263 * 22 21 19 39 39 H 1.08994 * 109.46762 * 269.69243 * 26 25 23 40 40 H 1.08996 * 109.46761 * 29.69146 * 26 25 23 41 41 H 1.08999 * 109.47182 * 149.69234 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7656 -1.4154 5 1 1.9289 1.1935 -2.2332 6 6 3.0008 2.9503 -1.6664 7 7 3.5036 3.6468 -0.6705 8 14 3.1798 3.5660 -3.4209 9 1 1.8336 3.7722 -4.0129 10 1 3.9233 4.8515 -3.4209 11 1 3.9253 2.5635 -4.2236 12 16 2.2930 -1.4342 -0.0006 13 8 3.5759 -1.1566 -0.5448 14 8 1.4113 -2.4063 -0.5455 15 6 2.5536 -1.8866 1.6822 16 6 1.6158 -2.6639 2.3402 17 6 1.8111 -3.0231 3.6593 18 6 2.9516 -2.6039 4.3273 19 6 3.8975 -1.8199 3.6637 20 6 3.6929 -1.4647 2.3390 21 7 4.9159 -1.5584 4.5772 22 6 6.1213 -0.7685 4.3144 23 6 4.6036 -2.1553 5.7430 24 8 5.2843 -2.1232 6.7512 25 7 3.4245 -2.7941 5.6236 26 6 2.7504 -3.5542 6.6792 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5139 30 1 1.6502 2.0042 0.5895 31 1 3.1858 1.1176 0.4343 32 1 3.9671 4.4804 -0.8471 33 1 0.7274 -2.9901 1.8200 34 1 1.0771 -3.6293 4.1695 35 1 4.4223 -0.8585 1.8225 36 1 5.9294 0.2776 4.5531 37 1 6.9397 -1.1379 4.9324 38 1 6.3918 -0.8574 3.2622 39 1 3.0707 -4.5952 6.6384 40 1 3.0075 -3.1328 7.6510 41 1 1.6715 -3.4999 6.5336 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019625145.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:43 Heat of formation + Delta-G solvation = -29.745628 kcal Electronic energy + Delta-G solvation = -27714.463263 eV Core-core repulsion = 23723.183386 eV Total energy + Delta-G solvation = -3991.279876 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 3.27 seconds Orbital eigenvalues (eV) -42.72666 -38.57144 -36.70886 -36.15158 -35.95111 -35.55129 -35.21583 -32.46517 -30.84366 -30.42057 -28.59317 -27.80362 -26.17515 -25.10956 -23.14426 -22.80078 -22.28474 -20.86684 -19.08336 -17.85795 -17.75289 -17.04793 -16.89439 -16.64959 -16.36841 -15.48331 -15.44996 -15.13493 -14.72175 -14.41135 -14.34546 -14.26048 -13.61569 -13.38637 -13.34573 -13.17140 -13.09959 -12.75289 -12.61872 -12.32907 -12.17760 -11.79241 -11.64824 -11.41266 -11.18704 -11.09345 -10.96093 -10.89722 -10.72499 -10.66433 -10.59699 -10.47784 -10.04996 -9.79048 -8.72820 -8.46909 -8.15788 -8.07144 -6.09220 -4.13420 0.62312 0.99633 1.05354 1.86056 2.64788 2.90057 3.19647 3.32849 3.36554 3.41011 3.72600 4.16795 4.29613 4.34707 4.43367 4.66103 4.77348 4.91847 4.94218 5.04891 5.16626 5.20495 5.23297 5.24412 5.28147 5.38662 5.48706 5.62342 5.69381 5.96270 5.98660 6.01061 6.13491 6.25362 6.33468 6.45010 6.52687 7.01605 7.16750 7.33169 7.53413 7.88001 7.90863 8.16156 8.88852 9.52029 10.99240 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.015426 B = 0.003636 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.633651 B = 7699.030917 C = 8824.909563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.985 5.985 3 C 0.255 3.745 4 C -0.530 4.530 5 H 0.061 0.939 6 C 0.063 3.937 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.274 1.274 12 S 2.689 3.311 13 O -0.940 6.940 14 O -0.973 6.973 15 C -0.666 4.666 16 C -0.013 4.013 17 C -0.128 4.128 18 C 0.133 3.867 19 C 0.067 3.933 20 C 0.007 3.993 21 N -0.538 5.538 22 C 0.095 3.905 23 C 0.679 3.321 24 O -0.555 6.555 25 N -0.544 5.544 26 C 0.099 3.901 27 H 0.041 0.959 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.037 0.963 31 H 0.039 0.961 32 H 0.264 0.736 33 H 0.150 0.850 34 H 0.137 0.863 35 H 0.152 0.848 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.688 -12.436 11.998 17.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.826 5.826 3 C 0.134 3.866 4 C -0.570 4.570 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.199 1.199 12 S 2.776 3.224 13 O -0.930 6.930 14 O -0.963 6.963 15 C -0.751 4.751 16 C -0.035 4.035 17 C -0.150 4.150 18 C 0.030 3.970 19 C -0.035 4.035 20 C -0.015 4.015 21 N -0.260 5.260 22 C -0.045 4.045 23 C 0.383 3.617 24 O -0.431 6.431 25 N -0.265 5.265 26 C -0.042 4.042 27 H 0.059 0.941 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.167 0.833 34 H 0.155 0.845 35 H 0.169 0.831 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.089 0.911 40 H 0.107 0.893 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.729 -12.689 12.218 17.825 hybrid contribution 0.138 0.584 0.003 0.600 sum -2.592 -12.104 12.221 17.395 Atomic orbital electron populations 1.21420 0.79691 1.03784 1.00513 1.57321 1.14386 1.22438 1.88414 1.19118 0.91092 0.78565 0.97855 1.21452 1.36284 1.06397 0.92827 0.92028 1.24919 0.95047 0.96454 0.97473 1.69905 1.37230 1.15347 1.31006 0.86578 0.78347 0.78021 0.84658 1.20149 1.21209 1.19915 1.02195 0.73840 0.72806 0.73580 1.93605 1.40122 1.84154 1.75106 1.93501 1.66462 1.60215 1.76108 1.31379 1.02500 1.12729 1.28453 1.20632 0.97351 0.92659 0.92808 1.20094 0.95878 1.04255 0.94810 1.18291 0.95980 0.98365 0.84317 1.18064 0.89943 1.02616 0.92852 1.19878 0.95987 0.95761 0.89921 1.44995 1.20928 1.49800 1.10258 1.21871 0.83944 0.95164 1.03566 1.15929 0.81758 0.80353 0.83709 1.91026 1.54815 1.67035 1.30247 1.45148 1.20538 1.49908 1.10871 1.21780 0.97402 0.95578 0.89403 0.94060 0.90071 0.91251 0.94488 0.94348 0.92610 0.83255 0.84483 0.83081 0.90662 0.89370 0.89175 0.91089 0.89318 0.89653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.44 10.68 59.85 0.64 2.08 16 2 N -0.98 -19.08 3.17 -123.05 -0.39 -19.47 16 3 C 0.26 6.05 5.08 -5.20 -0.03 6.02 16 4 C -0.53 -14.24 9.38 -34.44 -0.32 -14.57 16 5 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 7 N -0.90 -25.22 13.29 55.43 0.74 -24.48 16 8 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 12 S 2.69 49.62 5.64 -107.50 -0.61 49.01 16 13 O -0.94 -20.71 16.24 -57.17 -0.93 -21.64 16 14 O -0.97 -18.26 15.87 -57.17 -0.91 -19.17 16 15 C -0.67 -10.02 5.97 -39.55 -0.24 -10.26 16 16 C -0.01 -0.17 9.51 -39.56 -0.38 -0.54 16 17 C -0.13 -1.37 10.02 -39.48 -0.40 -1.77 16 18 C 0.13 1.68 6.83 -83.79 -0.57 1.11 16 19 C 0.07 0.94 6.83 -83.80 -0.57 0.37 16 20 C 0.01 0.10 9.49 -39.47 -0.37 -0.28 16 21 N -0.54 -7.40 3.18 -126.33 -0.40 -7.80 16 22 C 0.10 1.04 11.00 59.85 0.66 1.70 16 23 C 0.68 9.93 8.45 -87.17 -0.74 9.19 16 24 O -0.56 -9.34 17.48 5.20 0.09 -9.25 16 25 N -0.54 -6.57 3.19 -126.32 -0.40 -6.97 16 26 C 0.10 0.76 11.01 59.85 0.66 1.42 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 29 H 0.07 0.99 7.02 -51.93 -0.36 0.63 16 30 H 0.04 0.89 8.11 -51.93 -0.42 0.47 16 31 H 0.04 0.95 7.61 -51.93 -0.40 0.55 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.15 1.54 7.60 -52.49 -0.40 1.14 16 34 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 35 H 0.15 2.26 7.61 -52.49 -0.40 1.86 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 0.88 8.03 -51.93 -0.42 0.46 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.68 8.03 -51.93 -0.42 0.26 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 365.59 15.07 5.51 5.51 Total: -1.00 -35.18 365.59 -9.39 -44.57 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -5.31 Total: -2.57 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -1.75 Total: -3.88 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: -0.46 Total: -58.72 kcal Atomic # 8 Polarization: -48.31 SS G_CDS: -1.74 Total: -50.05 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 49.62 SS G_CDS: -0.61 Total: 49.01 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.18 -9.39 -44.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019625145.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.823 kcal (2) G-P(sol) polarization free energy of solvation -35.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.27 seconds