Wall clock time and date at job start Tue Mar 31 2020 05:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00007 * 2 1 4 4 H 1.48504 * 109.46960 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47147 * 299.99808 * 3 2 1 6 6 H 1.48498 * 109.47463 * 59.99958 * 3 2 1 7 7 C 1.38812 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00133 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00135 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00039 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.54229 * 323.60652 * 10 9 7 12 12 C 1.54230 * 110.73553 * 200.67054 * 10 9 7 13 13 C 1.51324 * 103.55120 * 241.19417 * 12 10 9 14 14 O 1.21228 * 125.39026 * 180.24955 * 13 12 10 15 15 N 1.33872 * 109.20605 * 0.38828 * 13 12 10 16 16 C 1.40226 * 122.76066 * 179.84038 * 15 13 12 17 17 C 1.38824 * 120.05698 * 292.44055 * 16 15 13 18 18 C 1.38117 * 119.94456 * 179.70192 * 17 16 15 19 19 C 1.38350 * 120.05527 * 0.29601 * 18 17 16 20 20 Br 1.89100 * 119.94668 * 179.97438 * 19 18 17 21 21 C 1.38365 * 120.11581 * 0.02562 * 19 18 17 22 22 C 1.38119 * 120.04938 * 359.97438 * 21 19 18 23 23 C 1.33877 * 114.47744 * 359.57359 * 15 13 12 24 24 O 1.21225 * 125.39721 * 180.24668 * 23 15 13 25 25 H 0.97003 * 119.99875 * 0.02562 * 1 2 3 26 26 H 0.97002 * 119.99324 * 0.02562 * 9 7 2 27 27 H 1.08998 * 110.60774 * 359.93483 * 12 10 9 28 28 H 1.09003 * 110.60660 * 122.75428 * 12 10 9 29 29 H 1.07997 * 120.02715 * 359.96884 * 17 16 15 30 30 H 1.08001 * 119.96908 * 180.27400 * 18 17 16 31 31 H 1.07999 * 119.97274 * 180.02562 * 21 19 18 32 32 H 1.07999 * 120.02213 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9607 -3.5772 -0.6061 12 6 1.1622 -4.8044 -0.5097 13 6 1.0971 -5.7525 0.6679 14 8 0.4902 -6.8017 0.6919 15 7 1.8133 -5.2476 1.6800 16 6 1.9430 -5.8971 2.9160 17 6 0.8413 -6.0312 3.7500 18 6 0.9704 -6.6768 4.9641 19 6 2.1976 -7.1842 5.3522 20 35 2.3709 -8.0669 7.0155 21 6 3.2987 -7.0460 4.5257 22 6 3.1748 -6.4012 3.3106 23 6 2.4000 -4.0742 1.4131 24 8 3.0949 -3.4456 2.1822 25 1 -0.4850 0.8401 -0.0004 26 1 0.3555 -2.3880 -0.0005 27 1 0.1693 -4.4328 -0.7628 28 1 1.6182 -5.2941 -1.3702 29 1 -0.1167 -5.6349 3.4477 30 1 0.1126 -6.7852 5.6113 31 1 4.2555 -7.4434 4.8307 32 1 4.0344 -6.2940 2.6657 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019770963.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:14 Heat of formation + Delta-G solvation = -9.273480 kcal Electronic energy + Delta-G solvation = -20605.574563 eV Core-core repulsion = 17192.470756 eV Total energy + Delta-G solvation = -3413.103808 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -41.90225 -39.04212 -38.21876 -35.64448 -35.09294 -32.88509 -31.57059 -31.33561 -29.84293 -28.16279 -25.42226 -23.79425 -23.18167 -22.71290 -21.47532 -19.64516 -17.95131 -17.46232 -16.61517 -16.28576 -16.07184 -15.25857 -15.15242 -14.62288 -14.28058 -13.87209 -13.79778 -13.76370 -13.48346 -13.40860 -13.21515 -12.33062 -12.02672 -11.70473 -11.46597 -11.13556 -11.07777 -11.01579 -10.51420 -10.46765 -10.18319 -10.11782 -9.92970 -9.78197 -9.25708 -9.14504 -8.67890 -7.37427 -6.03883 -3.36773 0.75664 1.09444 1.38161 1.84939 2.66313 2.99643 3.32868 3.36600 3.40537 3.42817 4.35149 4.48333 4.57682 4.64688 4.77385 4.84876 5.04006 5.11087 5.14807 5.27277 5.42475 5.58016 5.67787 5.69761 5.90984 5.94950 6.05065 6.11508 6.16303 6.56257 7.02961 7.53479 7.59418 8.08836 8.20061 9.23531 9.63639 9.99572 11.16868 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.019903 B = 0.002947 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.456316 B = 9498.734343 C =10262.955973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.000 4.000 3 Si 0.915 3.085 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.257 4.257 8 H 0.081 0.919 9 N -0.686 5.686 10 C 0.156 3.844 11 H 0.106 0.894 12 C -0.161 4.161 13 C 0.534 3.466 14 O -0.492 6.492 15 N -0.538 5.538 16 C 0.139 3.861 17 C -0.097 4.097 18 C -0.080 4.080 19 C -0.090 4.090 20 Br -0.052 7.052 21 C -0.081 4.081 22 C -0.098 4.098 23 C 0.490 3.510 24 O -0.465 6.465 25 H 0.260 0.740 26 H 0.392 0.608 27 H 0.126 0.874 28 H 0.122 0.878 29 H 0.136 0.864 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.928 -17.317 8.458 19.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.198 4.198 3 Si 0.745 3.255 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.387 4.387 8 H 0.099 0.901 9 N -0.326 5.326 10 C 0.039 3.961 11 H 0.124 0.876 12 C -0.201 4.201 13 C 0.325 3.675 14 O -0.364 6.364 15 N -0.281 5.281 16 C 0.049 3.951 17 C -0.117 4.117 18 C -0.100 4.100 19 C -0.169 4.169 20 Br 0.034 6.966 21 C -0.101 4.101 22 C -0.118 4.118 23 C 0.276 3.724 24 O -0.331 6.331 25 H 0.070 0.930 26 H 0.228 0.772 27 H 0.144 0.856 28 H 0.140 0.860 29 H 0.154 0.846 30 H 0.157 0.843 31 H 0.157 0.843 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.158 -17.616 9.484 20.434 hybrid contribution -0.024 1.132 -0.034 1.133 sum 4.134 -16.484 9.450 19.445 Atomic orbital electron populations 1.69665 1.05321 1.26473 1.55536 1.24848 0.95600 0.98242 1.01077 0.86004 0.79084 0.83073 0.77315 1.20065 1.21489 1.21518 1.19346 0.91591 0.83097 1.44664 0.90074 1.42450 1.05905 0.98829 1.85420 1.21019 0.97294 0.87711 0.90050 0.87606 1.22875 1.04965 0.95424 0.96855 1.21076 0.75959 0.85752 0.84744 1.90736 1.40535 1.22671 1.82412 1.45223 1.48225 1.22572 1.12129 1.17966 0.94421 0.95900 0.86778 1.21211 0.98877 0.98600 0.93026 1.20968 0.96279 0.96651 0.96120 1.21803 0.96804 1.04306 0.93995 1.96703 1.98433 1.77039 1.24473 1.20953 0.97914 0.98237 0.93019 1.21138 0.96929 0.96917 0.96808 1.24135 0.76777 0.77391 0.94082 1.90681 1.34147 1.53934 1.54366 0.92982 0.77185 0.85630 0.86025 0.84608 0.84310 0.84325 0.84636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 52. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.03 13.06 55.49 0.72 -25.30 16 2 C 0.00 0.00 5.50 -17.43 -0.10 -0.10 16 3 Si 0.92 21.41 29.55 -169.99 -5.02 16.38 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.26 -6.62 9.97 -15.06 -0.15 -6.77 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.69 -15.37 5.20 -53.63 -0.28 -15.65 16 10 C 0.16 2.69 3.72 -68.14 -0.25 2.43 16 11 H 0.11 1.67 8.12 -51.93 -0.42 1.25 16 12 C -0.16 -2.15 6.79 -26.93 -0.18 -2.33 16 13 C 0.53 8.18 7.96 -11.08 -0.09 8.10 16 14 O -0.49 -8.43 17.61 5.60 0.10 -8.33 16 15 N -0.54 -8.76 2.61 -59.40 -0.16 -8.92 16 16 C 0.14 2.16 4.95 -83.58 -0.41 1.75 16 17 C -0.10 -1.39 9.81 -39.41 -0.39 -1.77 16 18 C -0.08 -0.98 9.78 -39.58 -0.39 -1.37 16 19 C -0.09 -1.07 6.22 -39.49 -0.25 -1.32 16 20 Br -0.05 -0.53 33.70 -68.01 -2.29 -2.82 16 21 C -0.08 -0.96 9.78 -39.58 -0.39 -1.34 16 22 C -0.10 -1.33 9.78 -39.41 -0.39 -1.72 16 23 C 0.49 9.12 7.59 -11.09 -0.08 9.03 16 24 O -0.47 -10.31 17.59 5.61 0.10 -10.21 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.39 9.17 7.52 -40.82 -0.31 8.87 16 27 H 0.13 1.66 7.67 -51.93 -0.40 1.26 16 28 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.14 1.88 8.06 -52.49 -0.42 1.46 16 30 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 312.31 15.07 4.71 4.71 Total: -1.00 -31.07 312.31 -7.97 -39.04 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -2.79 Total: 6.51 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -3.06 Total: 4.59 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: 0.29 Total: -49.86 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: 0.20 Total: -18.54 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 35 Polarization: -0.53 SS G_CDS: -2.29 Total: -2.82 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.07 -7.97 -39.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019770963.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.762 kcal (2) G-P(sol) polarization free energy of solvation -31.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds