Wall clock time and date at job start Tue Mar 31 2020 05:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38258 * 119.99453 * 2 1 4 4 C 1.38217 * 119.99710 * 180.25808 * 3 2 1 5 5 C 1.38264 * 119.99754 * 359.48335 * 4 3 2 6 6 C 1.50697 * 119.99938 * 180.28019 * 5 4 3 7 7 C 1.38206 * 119.99907 * 0.25766 * 5 4 3 8 8 S 1.76201 * 119.99871 * 180.02562 * 7 5 4 9 9 O 1.42101 * 106.40307 * 180.62559 * 8 7 5 10 10 O 1.42098 * 106.39908 * 313.53902 * 8 7 5 11 11 N 1.65599 * 107.22025 * 67.08180 * 8 7 5 12 12 C 1.47078 * 120.87896 * 265.32788 * 11 8 7 13 13 C 1.53701 * 108.27350 * 128.75564 * 12 11 8 14 14 N 1.46895 * 109.26008 * 54.08178 * 13 12 11 15 15 C 1.46900 * 111.00237 * 172.60930 * 14 13 12 16 16 C 1.50699 * 109.46659 * 294.29876 * 15 14 13 17 17 H 1.07991 * 120.00671 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99372 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00110 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99711 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46899 * 60.00166 * 20 18 16 22 22 H 1.48496 * 109.47086 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47057 * 300.00527 * 20 18 16 24 24 C 1.46900 * 111.26819 * 296.75952 * 14 13 12 25 25 C 1.47075 * 120.88161 * 85.60691 * 11 8 7 26 26 C 1.38207 * 120.00124 * 179.76260 * 2 1 3 27 27 H 1.09000 * 109.47505 * 270.23544 * 1 2 3 28 28 H 1.09003 * 109.47648 * 30.23908 * 1 2 3 29 29 H 1.09003 * 109.46787 * 150.23636 * 1 2 3 30 30 H 1.07998 * 120.00253 * 0.02562 * 3 2 1 31 31 H 1.07995 * 120.00071 * 179.76767 * 4 3 2 32 32 H 1.08999 * 109.46812 * 96.32344 * 6 5 4 33 33 H 1.08994 * 109.47219 * 216.32630 * 6 5 4 34 34 H 1.09004 * 109.46982 * 336.32832 * 6 5 4 35 35 H 1.08992 * 109.63155 * 248.52004 * 12 11 8 36 36 H 1.08997 * 109.62886 * 9.10620 * 12 11 8 37 37 H 1.09004 * 109.64553 * 294.07776 * 13 12 11 38 38 H 1.08997 * 109.44110 * 173.96068 * 13 12 11 39 39 H 1.08999 * 109.46919 * 54.30024 * 15 14 13 40 40 H 1.09004 * 109.46882 * 174.30196 * 15 14 13 41 41 H 0.97004 * 119.99722 * 180.02562 * 19 18 16 42 42 H 1.09007 * 109.49048 * 303.14278 * 24 14 13 43 43 H 1.08995 * 109.49504 * 183.06385 * 24 14 13 44 44 H 1.09006 * 109.62996 * 350.89770 * 25 11 8 45 45 H 1.09000 * 109.62947 * 111.47762 * 25 11 8 46 46 H 1.07995 * 120.00152 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 -0.0054 5 6 4.2717 0.0001 0.0000 6 6 5.7787 0.0002 0.0005 7 6 3.5807 -1.1968 0.0054 8 16 4.4618 -2.7227 0.0130 9 8 3.4820 -3.7518 0.0026 10 8 5.4759 -2.6052 -0.9754 11 7 5.2398 -2.8323 1.4707 12 6 6.6370 -2.3963 1.6153 13 6 6.7212 -1.4382 2.8142 14 7 6.1496 -2.0926 3.9986 15 6 6.3675 -1.2824 5.2044 16 6 7.8431 -1.2115 5.5020 17 1 8.5485 -1.7173 4.8595 18 6 8.2927 -0.4999 6.5941 19 7 7.4337 0.1164 7.3763 20 14 10.1217 -0.4126 6.9635 21 1 10.8295 0.2080 5.8148 22 1 10.3421 0.4076 8.1816 23 1 10.6476 -1.7832 7.1870 24 6 4.7220 -2.3828 3.8102 25 6 4.5538 -3.3739 2.6536 26 6 2.1981 -1.1969 0.0050 27 1 -0.3634 0.0042 1.0276 28 1 -0.3634 0.8878 -0.5175 29 1 -0.3633 -0.8921 -0.5102 30 1 1.6582 2.1327 0.0004 31 1 4.1203 2.1328 -0.0092 32 1 6.1416 -0.1086 1.0225 33 1 6.1422 -0.8303 -0.6045 34 1 6.1421 0.9396 -0.4160 35 1 7.2748 -3.2628 1.7897 36 1 6.9551 -1.8803 0.7095 37 1 6.1621 -0.5282 2.5961 38 1 7.7645 -1.1871 3.0053 39 1 5.9810 -0.2765 5.0409 40 1 5.8484 -1.7386 6.0474 41 1 7.7500 0.6173 8.1444 42 1 4.1907 -1.4596 3.5782 43 1 4.3154 -2.8172 4.7234 44 1 3.4940 -3.5046 2.4346 45 1 4.9952 -4.3326 2.9259 46 1 1.6582 -2.1322 0.0084 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020181028.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:35 Heat of formation + Delta-G solvation = -34.002111 kcal Electronic energy + Delta-G solvation = -28636.817760 eV Core-core repulsion = 24846.612314 eV Total energy + Delta-G solvation = -3790.205446 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.71658 -38.46530 -37.42510 -35.88736 -34.51464 -34.06070 -32.35000 -31.43291 -30.99869 -29.35278 -27.87660 -25.32513 -24.94351 -23.54097 -23.36591 -21.80474 -21.54026 -20.14698 -18.66289 -17.72543 -17.06927 -16.45222 -16.27819 -15.92271 -15.40100 -14.87313 -14.70622 -14.52276 -14.38895 -14.25486 -14.08575 -13.89628 -13.51236 -13.35820 -13.07170 -12.93949 -12.57663 -12.38275 -12.29882 -12.20410 -12.08192 -11.86415 -11.77862 -11.57529 -11.39858 -11.28553 -11.08271 -10.84852 -10.77752 -10.61462 -10.57911 -10.40145 -9.90125 -9.50221 -9.34602 -8.86945 -8.71853 -8.48759 -7.32494 -6.08518 -4.10514 0.34117 0.71281 1.11187 2.88110 3.29687 3.31523 3.34460 3.36985 3.72378 4.23878 4.36796 4.53216 4.58444 4.68395 4.71660 4.88959 4.93685 4.99525 5.23254 5.26953 5.34336 5.35023 5.37682 5.42287 5.48122 5.54049 5.62664 5.68617 5.69822 5.77920 5.80490 5.88969 6.01729 6.05831 6.16231 6.19260 6.23284 6.31465 6.43720 6.49316 6.69514 6.71751 7.20151 7.25197 7.72255 7.99889 8.10455 8.45768 8.96769 9.54229 11.02153 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014636 B = 0.003599 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.585864 B = 7777.924034 C = 8342.104697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.118 4.118 3 C -0.063 4.063 4 C -0.140 4.140 5 C 0.024 3.976 6 C -0.195 4.195 7 C -0.677 4.677 8 S 2.694 3.306 9 O -0.962 6.962 10 O -0.958 6.958 11 N -0.992 5.992 12 C 0.113 3.887 13 C 0.047 3.953 14 N -0.531 5.531 15 C 0.194 3.806 16 C -0.510 4.510 17 H 0.064 0.936 18 C 0.057 3.943 19 N -0.898 5.898 20 Si 0.898 3.102 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.276 1.276 24 C 0.040 3.960 25 C 0.130 3.870 26 C -0.020 4.020 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.029 0.971 38 H 0.098 0.902 39 H -0.010 1.010 40 H 0.031 0.969 41 H 0.262 0.738 42 H 0.026 0.974 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.933 0.171 -15.357 18.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.119 4.119 3 C -0.081 4.081 4 C -0.159 4.159 5 C 0.023 3.977 6 C -0.251 4.251 7 C -0.763 4.763 8 S 2.785 3.215 9 O -0.952 6.952 10 O -0.948 6.948 11 N -0.832 5.832 12 C -0.012 4.012 13 C -0.083 4.083 14 N -0.256 5.256 15 C 0.069 3.931 16 C -0.549 4.549 17 H 0.082 0.918 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.726 3.274 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.201 1.201 24 C -0.090 4.090 25 C 0.005 3.995 26 C -0.039 4.039 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.146 0.854 31 H 0.149 0.851 32 H 0.120 0.880 33 H 0.128 0.872 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.047 0.953 38 H 0.116 0.884 39 H 0.008 0.992 40 H 0.049 0.951 41 H 0.072 0.928 42 H 0.044 0.956 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.682 -0.778 -15.792 19.081 hybrid contribution 0.169 1.838 0.645 1.955 sum -10.513 1.060 -15.148 18.469 Atomic orbital electron populations 1.20793 0.90553 1.02970 1.02691 1.19995 0.96486 0.93091 1.02328 1.21319 0.94303 0.97753 0.94705 1.21201 0.94331 0.97846 1.02496 1.19538 0.95963 0.91773 0.90415 1.22177 0.90614 1.06572 1.05729 1.30864 1.06176 1.20121 1.19128 1.01912 0.73133 0.73679 0.72776 1.93540 1.61418 1.54004 1.86258 1.93501 1.57516 1.86806 1.56962 1.57636 1.21987 1.77177 1.26393 1.22057 0.80180 0.99635 0.99306 1.22557 1.02172 0.93654 0.89913 1.61995 1.11374 1.48330 1.03890 1.19726 0.97441 0.90089 0.85830 1.21109 0.91805 1.31124 1.10858 0.91777 1.24986 0.97963 0.95479 0.96068 1.69945 1.34055 1.33504 1.16233 0.86562 0.85113 0.78123 0.77610 1.20249 1.21411 1.20117 1.22400 0.91491 0.97372 0.97720 1.21586 0.96071 0.97767 0.84124 1.20805 0.91806 0.98825 0.92512 0.90882 0.91433 0.91245 0.85415 0.85108 0.88025 0.87159 0.89898 0.89939 0.88987 0.95274 0.88419 0.99192 0.95053 0.92834 0.95598 0.90068 0.89993 0.89966 0.84166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.01 36.01 0.36 -0.52 16 2 C -0.12 -1.28 5.88 -104.62 -0.62 -1.90 16 3 C -0.06 -0.66 9.70 -39.58 -0.38 -1.04 16 4 C -0.14 -1.61 9.68 -39.58 -0.38 -1.99 16 5 C 0.02 0.32 5.87 -104.63 -0.61 -0.30 16 6 C -0.20 -2.37 7.98 36.00 0.29 -2.08 16 7 C -0.68 -9.17 5.91 -39.58 -0.23 -9.40 16 8 S 2.69 38.73 5.13 -107.50 -0.55 38.18 16 9 O -0.96 -15.24 15.90 -57.17 -0.91 -16.15 16 10 O -0.96 -15.05 14.15 -57.17 -0.81 -15.86 16 11 N -0.99 -14.17 3.32 -112.98 -0.37 -14.55 16 12 C 0.11 1.63 5.59 -3.36 -0.02 1.62 16 13 C 0.05 0.81 4.92 -3.46 -0.02 0.80 16 14 N -0.53 -10.54 4.62 -235.46 -1.09 -11.63 16 15 C 0.19 4.78 4.72 -4.98 -0.02 4.75 16 16 C -0.51 -13.59 8.41 -34.44 -0.29 -13.88 16 17 H 0.06 1.67 7.13 -52.49 -0.37 1.30 16 18 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -25.87 13.29 55.43 0.74 -25.14 16 20 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 C 0.04 0.67 5.62 -3.70 -0.02 0.65 16 25 C 0.13 1.83 6.51 -3.60 -0.02 1.81 16 26 C -0.02 -0.25 9.20 -39.58 -0.36 -0.61 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 29 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 30 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 31 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 32 H 0.10 1.28 3.84 -51.93 -0.20 1.08 16 33 H 0.11 1.41 4.09 -51.93 -0.21 1.19 16 34 H 0.08 0.83 8.04 -51.93 -0.42 0.41 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.09 1.17 4.61 -51.93 -0.24 0.93 16 37 H 0.03 0.50 6.03 -51.93 -0.31 0.19 16 38 H 0.10 1.82 6.67 -51.93 -0.35 1.47 16 39 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 40 H 0.03 0.83 7.97 -51.93 -0.41 0.42 16 41 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.03 0.44 8.14 -51.92 -0.42 0.02 16 43 H 0.08 1.31 7.99 -51.93 -0.41 0.90 16 44 H 0.08 1.01 7.35 -51.93 -0.38 0.63 16 45 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.14 1.58 7.33 -52.49 -0.38 1.19 16 LS Contribution 365.06 15.07 5.50 5.50 Total: -1.00 -32.10 365.06 -11.58 -43.68 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.63 Total: 0.72 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: -2.44 Total: -20.66 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: -0.73 Total: -51.31 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -1.72 Total: -32.01 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 38.73 SS G_CDS: -0.55 Total: 38.18 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.10 -11.58 -43.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020181028.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.677 kcal (2) G-P(sol) polarization free energy of solvation -32.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds