Wall clock time and date at job start Tue Mar 31 2020 07:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47295 * 2 1 4 4 H 1.09003 * 109.47005 * 304.99898 * 3 2 1 5 5 O 1.42902 * 109.47132 * 64.99660 * 3 2 1 6 6 C 1.35899 * 117.00050 * 266.69299 * 5 3 2 7 7 C 1.38753 * 120.05543 * 356.14845 * 6 5 3 8 8 C 1.38125 * 119.94260 * 180.02562 * 7 6 5 9 9 C 1.38287 * 120.05477 * 359.97438 * 8 7 6 10 10 C 1.38241 * 120.11377 * 0.04678 * 9 8 7 11 11 C 1.50702 * 119.97514 * 179.97438 * 10 9 8 12 12 C 1.38169 * 120.05759 * 359.67316 * 10 9 8 13 13 C 1.50694 * 109.47395 * 184.99915 * 3 2 1 14 14 O 1.21278 * 120.00052 * 245.00065 * 13 3 2 15 15 N 1.34778 * 120.00093 * 64.99961 * 13 3 2 16 16 C 1.39234 * 120.00134 * 185.25208 * 15 13 3 17 17 C 1.39491 * 119.83119 * 212.41493 * 16 15 13 18 18 C 1.36372 * 120.16434 * 179.76105 * 17 16 15 19 19 C 1.40872 * 119.83158 * 0.51273 * 18 17 16 20 20 C 1.41151 * 120.16332 * 179.72296 * 19 18 17 21 21 H 1.08005 * 119.99812 * 207.44078 * 20 19 18 22 22 C 1.39901 * 120.00367 * 27.44099 * 20 19 18 23 23 N 1.30872 * 120.00023 * 12.25600 * 22 20 19 24 24 Si 1.86805 * 120.00046 * 192.25299 * 22 20 19 25 25 H 1.48501 * 109.46935 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46711 * 120.00238 * 24 22 20 27 27 H 1.48498 * 109.46993 * 239.99876 * 24 22 20 28 28 C 1.40873 * 119.67068 * 359.73914 * 19 18 17 29 29 C 1.36380 * 119.82807 * 0.02562 * 28 19 18 30 30 H 1.09000 * 109.47010 * 60.00736 * 1 2 3 31 31 H 1.09004 * 109.46730 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47091 * 299.99621 * 1 2 3 33 33 H 1.09006 * 109.46923 * 239.99863 * 2 1 3 34 34 H 1.09001 * 109.47084 * 120.00224 * 2 1 3 35 35 H 1.07990 * 120.02974 * 359.97438 * 7 6 5 36 36 H 1.07996 * 119.97121 * 180.02562 * 8 7 6 37 37 H 1.08001 * 119.94280 * 180.02562 * 9 8 7 38 38 H 1.08997 * 109.47799 * 89.99375 * 11 10 9 39 39 H 1.08998 * 109.47222 * 210.00210 * 11 10 9 40 40 H 1.09003 * 109.46742 * 329.99753 * 11 10 9 41 41 H 1.07994 * 120.03575 * 180.29742 * 12 10 9 42 42 H 0.97000 * 119.99994 * 5.25071 * 15 13 3 43 43 H 1.07998 * 119.91532 * 0.02562 * 17 16 15 44 44 H 1.08004 * 120.08488 * 180.25248 * 18 17 16 45 45 H 0.97002 * 119.99971 * 180.02562 * 23 22 20 46 46 H 1.07998 * 120.08469 * 179.97438 * 28 19 18 47 47 H 1.07997 * 119.91149 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 8 1.6620 2.0814 1.2210 6 6 0.4971 2.7813 1.2162 7 6 -0.2262 2.9187 0.0400 8 6 -1.4096 3.6310 0.0376 9 6 -1.8740 4.2064 1.2062 10 6 -1.1550 4.0713 2.3792 11 6 -1.6637 4.7002 3.6508 12 6 0.0264 3.3549 2.3882 13 6 3.5419 1.4443 -0.1238 14 8 4.2250 1.8610 0.7875 15 7 4.1260 0.9827 -1.2473 16 6 5.5128 0.8821 -1.3201 17 6 6.1595 1.0755 -2.5408 18 6 7.5178 0.9833 -2.6189 19 6 8.2672 0.6812 -1.4650 20 6 9.6730 0.5783 -1.5390 21 1 10.2057 -0.0524 -0.8426 22 6 10.3764 1.2934 -2.5143 23 7 9.7747 2.2335 -3.1976 24 14 12.1744 0.9063 -2.8411 25 1 12.6159 -0.1905 -1.9425 26 1 12.3407 0.4843 -4.2552 27 1 12.9957 2.1169 -2.5860 28 6 7.6065 0.4820 -0.2368 29 6 6.2479 0.5822 -0.1733 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 0.1363 2.4699 -0.8729 36 1 -1.9731 3.7379 -0.8775 37 1 -2.7997 4.7626 1.2023 38 1 -2.3043 3.9916 4.1757 39 1 -0.8199 4.9674 4.2868 40 1 -2.2349 5.5966 3.4094 41 1 0.5853 3.2455 3.3058 42 1 3.5803 0.7207 -2.0052 43 1 5.5833 1.3031 -3.4255 44 1 8.0175 1.1374 -3.5640 45 1 10.2623 2.7290 -3.8741 46 1 8.1744 0.2497 0.6520 47 1 5.7400 0.4293 0.7674 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020456824.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:46 Heat of formation + Delta-G solvation = -29.656266 kcal Electronic energy + Delta-G solvation = -28193.159729 eV Core-core repulsion = 24305.813214 eV Total energy + Delta-G solvation = -3887.346515 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 12.86 seconds Orbital eigenvalues (eV) -40.87533 -39.52770 -37.97718 -37.01245 -34.56064 -33.92218 -32.86083 -32.71861 -30.42462 -29.63486 -29.14999 -27.48202 -27.20343 -24.81534 -22.79569 -22.65125 -22.05722 -21.20679 -20.49279 -19.51576 -18.33635 -17.51372 -17.26838 -16.28854 -16.07817 -15.88055 -15.64229 -15.20623 -14.70237 -14.55729 -14.10551 -13.99310 -13.95479 -13.70095 -13.39934 -13.05442 -13.00946 -12.73559 -12.50569 -12.26358 -12.17009 -12.12536 -11.95337 -11.83395 -11.79355 -11.39883 -11.35222 -11.17890 -11.07157 -10.99746 -10.75297 -10.61261 -9.98001 -9.60632 -9.41634 -9.15810 -8.97878 -8.93630 -8.26506 -7.57738 -6.98011 -6.73371 -4.33666 1.12115 1.28558 2.44965 2.74195 2.93933 3.05895 3.07564 3.12455 3.31337 3.55461 3.80424 3.92628 4.43822 4.57170 4.62004 4.62289 4.65462 4.80201 4.87033 5.01896 5.05880 5.14890 5.21351 5.31692 5.34927 5.42623 5.50705 5.64703 5.66942 5.70464 5.82922 5.88121 5.98922 6.15422 6.16844 6.23389 6.38910 6.39523 6.58291 6.71215 6.86903 7.02031 7.14961 7.23428 7.29518 7.57193 7.67753 7.84476 8.01167 8.21525 8.25818 8.56642 8.67698 8.86868 8.95947 10.18743 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.024490 B = 0.002044 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.064128 B =13697.943687 C =13961.146245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.139 4.139 3 C 0.067 3.933 4 H 0.099 0.901 5 O -0.280 6.280 6 C 0.142 3.858 7 C -0.219 4.219 8 C -0.076 4.076 9 C -0.164 4.164 10 C -0.048 4.048 11 C -0.115 4.115 12 C -0.154 4.154 13 C 0.498 3.502 14 O -0.507 6.507 15 N -0.644 5.644 16 C -0.005 4.005 17 C -0.114 4.114 18 C -0.149 4.149 19 C 0.104 3.896 20 C -0.455 4.455 21 H 0.078 0.922 22 C 0.071 3.929 23 N -0.798 5.798 24 Si 0.911 3.089 25 H -0.261 1.261 26 H -0.273 1.273 27 H -0.274 1.274 28 C -0.212 4.212 29 C -0.078 4.078 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.131 0.869 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.131 0.869 42 H 0.395 0.605 43 H 0.091 0.909 44 H 0.125 0.875 45 H 0.280 0.720 46 H 0.096 0.904 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.278 0.359 3.156 22.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.177 4.177 3 C 0.007 3.993 4 H 0.116 0.884 5 O -0.192 6.192 6 C 0.096 3.904 7 C -0.237 4.237 8 C -0.094 4.094 9 C -0.183 4.183 10 C -0.048 4.048 11 C -0.171 4.171 12 C -0.173 4.173 13 C 0.282 3.718 14 O -0.381 6.381 15 N -0.289 5.289 16 C -0.097 4.097 17 C -0.134 4.134 18 C -0.169 4.169 19 C 0.102 3.898 20 C -0.485 4.485 21 H 0.097 0.903 22 C -0.146 4.146 23 N -0.424 5.424 24 Si 0.736 3.264 25 H -0.184 1.184 26 H -0.198 1.198 27 H -0.200 1.200 28 C -0.232 4.232 29 C -0.098 4.098 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.148 0.852 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.149 0.851 42 H 0.228 0.772 43 H 0.109 0.891 44 H 0.142 0.858 45 H 0.090 0.910 46 H 0.114 0.886 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -21.600 0.804 3.831 21.952 hybrid contribution 0.487 -0.109 -0.913 1.041 sum -21.113 0.695 2.919 21.325 Atomic orbital electron populations 1.21947 0.94573 1.02384 1.02355 1.22005 0.97108 0.94151 1.04436 1.22379 0.93947 0.94980 0.88005 0.88377 1.86240 1.35991 1.63098 1.33839 1.19058 0.85574 0.91602 0.94167 1.21310 0.98354 1.06346 0.97704 1.20881 0.95008 0.95419 0.98061 1.20902 1.01047 1.03765 0.92539 1.19692 0.93523 0.95900 0.95693 1.20810 1.01575 1.00312 0.94446 1.20307 0.97719 1.02306 0.96961 1.20055 0.88532 0.79221 0.83958 1.90739 1.64191 1.44279 1.38888 1.42847 1.06751 1.63569 1.15703 1.17145 0.80188 1.16475 0.95887 1.20219 0.95269 1.03371 0.94583 1.20962 0.91300 1.05220 0.99395 1.17700 0.93458 0.88403 0.90288 1.19601 0.91947 1.23834 1.13137 0.90340 1.25931 1.00961 0.93288 0.94374 1.69824 1.38351 1.15644 1.18563 0.86208 0.81745 0.79409 0.79041 1.18420 1.19773 1.19982 1.20694 0.93269 1.12241 0.97011 1.20272 0.94154 0.99257 0.96136 0.92296 0.91983 0.92060 0.89601 0.89975 0.85154 0.85868 0.86119 0.90934 0.91240 0.91349 0.85144 0.77163 0.89098 0.85758 0.90951 0.88590 0.87924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 8.45 37.16 0.31 -1.04 16 2 C -0.14 -1.46 5.61 -26.73 -0.15 -1.62 16 3 C 0.07 0.89 2.58 -27.89 -0.07 0.81 16 4 H 0.10 1.06 5.36 -51.93 -0.28 0.78 16 5 O -0.28 -4.24 9.21 -39.29 -0.36 -4.60 16 6 C 0.14 1.82 5.26 -39.21 -0.21 1.61 16 7 C -0.22 -2.31 7.14 -39.43 -0.28 -2.59 16 8 C -0.08 -0.69 10.04 -39.61 -0.40 -1.09 16 9 C -0.16 -1.48 9.70 -39.56 -0.38 -1.87 16 10 C -0.05 -0.47 5.88 -104.65 -0.62 -1.08 16 11 C -0.11 -0.81 10.01 36.01 0.36 -0.45 16 12 C -0.15 -1.83 9.64 -39.43 -0.38 -2.21 16 13 C 0.50 8.92 6.91 -10.99 -0.08 8.84 16 14 O -0.51 -11.62 14.12 -14.30 -0.20 -11.83 16 15 N -0.64 -11.12 5.19 -9.74 -0.05 -11.17 16 16 C -0.01 -0.11 6.30 -83.57 -0.53 -0.64 16 17 C -0.11 -2.58 9.89 -39.79 -0.39 -2.97 16 18 C -0.15 -3.80 8.61 -39.26 -0.34 -4.13 16 19 C 0.10 2.79 5.56 -106.80 -0.59 2.20 16 20 C -0.46 -12.08 9.05 -37.85 -0.34 -12.42 16 21 H 0.08 2.00 7.88 -52.48 -0.41 1.59 16 22 C 0.07 1.79 5.23 -17.34 -0.09 1.69 16 23 N -0.80 -20.57 10.82 55.55 0.60 -19.97 16 24 Si 0.91 18.64 29.58 -169.99 -5.03 13.61 16 25 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 26 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 27 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 28 C -0.21 -5.41 9.74 -39.26 -0.38 -5.79 16 29 C -0.08 -1.89 8.58 -39.79 -0.34 -2.23 16 30 H 0.06 0.43 6.84 -51.93 -0.36 0.08 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.61 6.23 -51.93 -0.32 0.29 16 33 H 0.09 0.77 7.93 -51.93 -0.41 0.36 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.13 1.18 4.62 -52.49 -0.24 0.94 16 36 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 37 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 40 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 41 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 42 H 0.39 5.12 8.69 -40.82 -0.35 4.76 16 43 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 44 H 0.12 3.24 6.16 -52.48 -0.32 2.92 16 45 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 46 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 47 H 0.10 2.46 6.34 -52.49 -0.33 2.13 16 LS Contribution 383.67 15.07 5.78 5.78 Total: -1.00 -31.84 383.67 -10.55 -42.39 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -6.39 Total: 10.76 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: -4.90 Total: -24.97 kcal Atomic # 7 Polarization: -31.69 SS G_CDS: 0.55 Total: -31.14 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.56 Total: -16.43 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.84 -10.55 -42.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020456824.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.730 kcal (2) G-P(sol) polarization free energy of solvation -31.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.86 seconds