Wall clock time and date at job start Tue Mar 31 2020 05:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.37891 * 119.99983 * 120.54158 * 3 2 1 5 5 C 1.46298 * 119.99821 * 6.76113 * 4 3 2 6 6 C 1.40210 * 120.25647 * 39.48861 * 5 4 3 7 7 C 1.37632 * 119.87106 * 180.02562 * 6 5 4 8 8 C 1.38716 * 120.39208 * 0.02562 * 7 6 5 9 9 C 1.38043 * 120.51129 * 359.69202 * 8 7 6 10 10 C 1.38784 * 120.11792 * 0.56609 * 9 8 7 11 11 O 1.35434 * 120.19458 * 179.73848 * 10 9 8 12 12 C 1.34745 * 117.00295 * 4.91818 * 11 10 9 13 13 H 1.08009 * 119.99812 * 354.87893 * 12 11 10 14 14 C 1.38771 * 120.00282 * 174.59825 * 12 11 10 15 15 N 1.31469 * 119.99622 * 0.27946 * 14 12 11 16 16 Si 1.86794 * 119.99857 * 180.27499 * 14 12 11 17 17 H 1.48505 * 109.47460 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47340 * 120.00388 * 16 14 12 19 19 H 1.48509 * 109.47189 * 240.00202 * 16 14 12 20 20 C 1.47111 * 120.00166 * 300.54421 * 3 2 1 21 21 O 1.21647 * 120.00282 * 180.02562 * 20 3 2 22 22 N 1.34783 * 119.99617 * 359.97438 * 20 3 2 23 23 C 1.46498 * 119.99738 * 180.02562 * 22 20 3 24 24 C 1.50702 * 109.47073 * 180.02562 * 23 22 20 25 25 C 1.34512 * 125.79010 * 89.71296 * 24 23 22 26 26 C 1.41378 * 106.84243 * 179.89096 * 25 24 23 27 27 C 1.34519 * 106.83715 * 0.37434 * 26 25 24 28 28 O 1.34295 * 108.42317 * 359.77046 * 27 26 25 29 29 H 1.08002 * 119.99822 * 186.75965 * 4 3 2 30 30 H 1.08006 * 120.05920 * 0.04151 * 6 5 4 31 31 H 1.07998 * 119.80085 * 180.02562 * 7 6 5 32 32 H 1.07997 * 119.74274 * 179.97438 * 8 7 6 33 33 H 1.07998 * 119.94265 * 180.30024 * 9 8 7 34 34 H 0.97002 * 119.99162 * 179.97438 * 15 14 12 35 35 H 0.97001 * 120.00130 * 0.02562 * 22 20 3 36 36 H 1.08998 * 109.47392 * 300.00164 * 23 22 20 37 37 H 1.09000 * 109.46948 * 60.00430 * 23 22 20 38 38 H 1.08004 * 126.57688 * 0.03375 * 25 24 23 39 39 H 1.07999 * 126.58125 * 180.16880 * 26 25 24 40 40 H 1.08002 * 125.78739 * 179.75177 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2572 0.6078 -1.0285 5 6 2.5329 1.3775 -2.0401 6 6 1.4549 2.1936 -1.6690 7 6 0.7788 2.9139 -2.6273 8 6 1.1571 2.8373 -3.9597 9 6 2.2197 2.0434 -4.3420 10 6 2.9129 1.3039 -3.3941 11 8 3.9523 0.5204 -3.7682 12 6 4.3293 0.5801 -5.0605 13 1 3.7576 1.1683 -5.7632 14 6 5.4555 -0.1094 -5.4874 15 7 6.1514 -0.8252 -4.6320 16 14 5.9824 -0.0203 -7.2772 17 1 5.0385 0.8455 -8.0287 18 1 7.3511 0.5495 -7.3626 19 1 5.9769 -1.3848 -7.8634 20 6 3.3039 -0.6465 1.0972 21 8 4.5204 -0.6455 1.0975 22 7 2.6302 -1.2395 2.1027 23 6 3.3630 -1.8835 3.1957 24 6 2.3839 -2.4661 4.1821 25 6 1.8696 -3.7083 4.1397 26 6 1.0042 -3.8315 5.2509 27 6 1.0352 -2.6544 5.9012 28 8 1.8725 -1.8312 5.2494 29 1 4.3316 0.5151 -1.0872 30 1 1.1559 2.2570 -0.6331 31 1 -0.0511 3.5425 -2.3401 32 1 0.6189 3.4067 -4.7030 33 1 2.5094 1.9944 -5.3813 34 1 6.9383 -1.3074 -4.9305 35 1 1.6602 -1.2399 2.1027 36 1 3.9900 -2.6792 2.7935 37 1 3.9892 -1.1458 3.6974 38 1 2.0794 -4.4668 3.4001 39 1 0.4264 -4.7023 5.5233 40 1 0.4804 -2.4122 6.7957 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000022344692.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:06 Heat of formation + Delta-G solvation = 29.596062 kcal Electronic energy + Delta-G solvation = -26905.533703 eV Core-core repulsion = 22846.809035 eV Total energy + Delta-G solvation = -4058.724668 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.110 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.83953 -39.77477 -39.24476 -37.03735 -36.13230 -35.12268 -33.42361 -33.21224 -32.58568 -30.85816 -29.58553 -29.06451 -26.32249 -25.61567 -23.99849 -22.02500 -21.84985 -21.02190 -20.93567 -20.78569 -18.72539 -18.28617 -17.59673 -16.85990 -16.53336 -15.85599 -15.34551 -15.31095 -15.02505 -14.75101 -14.48422 -14.35365 -14.06436 -13.89673 -13.69275 -13.47168 -13.09783 -13.03098 -12.93227 -12.86301 -12.68053 -12.47385 -12.15999 -11.98698 -11.91718 -11.57909 -11.10790 -11.00146 -10.90405 -10.58886 -10.23219 -9.99810 -9.69390 -9.46510 -9.17184 -9.08422 -8.82618 -8.14456 -7.41648 -6.72824 -4.28869 0.75685 1.33780 2.11219 2.19756 2.29404 2.66093 2.91142 2.98342 3.00052 3.01304 3.07097 3.37303 3.74795 3.88781 4.31909 4.32538 4.34299 4.75098 4.77785 4.80342 4.89792 4.93011 5.17387 5.33236 5.41171 5.51715 5.52468 5.61007 5.67304 5.79353 5.82684 5.92182 6.18449 6.19558 6.27391 6.37932 6.40100 6.53726 6.83550 6.84856 6.96075 7.07616 7.12884 7.45579 7.50346 7.69819 7.81859 8.29319 8.70363 9.32577 10.42470 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013679 B = 0.002610 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.483268 B =10727.282132 C =12264.298916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C 0.268 3.732 3 C -0.203 4.203 4 C 0.143 3.857 5 C -0.204 4.204 6 C -0.032 4.032 7 C -0.218 4.218 8 C -0.047 4.047 9 C -0.232 4.232 10 C 0.181 3.819 11 O -0.151 6.151 12 C -0.396 4.396 13 H 0.099 0.901 14 C 0.045 3.955 15 N -0.840 5.840 16 Si 0.945 3.055 17 H -0.264 1.264 18 H -0.273 1.273 19 H -0.273 1.273 20 C 0.586 3.414 21 O -0.531 6.531 22 N -0.733 5.733 23 C 0.205 3.795 24 C -0.035 4.035 25 C -0.185 4.185 26 C -0.218 4.218 27 C -0.033 4.033 28 O -0.171 6.171 29 H 0.159 0.841 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.134 0.866 34 H 0.276 0.724 35 H 0.401 0.599 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.152 0.848 39 H 0.150 0.850 40 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.786 -1.255 13.148 14.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.045 4.045 3 C -0.211 4.211 4 C 0.119 3.881 5 C -0.206 4.206 6 C -0.050 4.050 7 C -0.237 4.237 8 C -0.066 4.066 9 C -0.251 4.251 10 C 0.123 3.877 11 O -0.050 6.050 12 C -0.471 4.471 13 H 0.117 0.883 14 C -0.163 4.163 15 N -0.471 5.471 16 Si 0.769 3.231 17 H -0.189 1.189 18 H -0.198 1.198 19 H -0.198 1.198 20 C 0.375 3.625 21 O -0.408 6.408 22 N -0.387 5.387 23 C 0.082 3.918 24 C -0.085 4.085 25 C -0.205 4.205 26 C -0.237 4.237 27 C -0.101 4.101 28 O -0.067 6.067 29 H 0.176 0.824 30 H 0.133 0.867 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.152 0.848 34 H 0.087 0.913 35 H 0.236 0.764 36 H 0.121 0.879 37 H 0.106 0.894 38 H 0.170 0.830 39 H 0.168 0.832 40 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -7.158 -1.323 13.368 15.222 hybrid contribution -0.079 -0.250 -0.872 0.911 sum -7.237 -1.573 12.496 14.526 Atomic orbital electron populations 1.81198 1.11799 1.10552 1.08336 1.25499 0.92542 0.92969 0.93512 1.17773 0.84566 1.16051 1.02662 1.23097 1.00554 0.80067 0.84388 1.17984 1.03243 1.08685 0.90685 1.20981 0.91452 0.93914 0.98695 1.20534 1.03694 1.06222 0.93218 1.21001 0.94590 0.95415 0.95574 1.21163 1.00106 1.03369 1.00428 1.19377 0.88143 0.88605 0.91570 1.83836 1.39739 1.51614 1.29850 1.21547 1.11267 1.32387 0.81864 0.88333 1.25419 0.94831 0.95342 1.00714 1.70002 1.16019 1.26189 1.34939 0.85577 0.79108 0.78788 0.79612 1.18853 1.19780 1.19840 1.17531 0.86828 0.77321 0.80773 1.90852 1.12611 1.59783 1.77602 1.45904 1.10444 1.58723 1.23589 1.19572 0.90191 0.98362 0.83707 1.22376 1.02132 0.92913 0.91093 1.21760 1.00465 0.97425 1.00858 1.21890 1.04294 0.99651 0.97853 1.24124 0.96423 0.89836 0.99720 1.84048 1.47988 1.41113 1.33520 0.82354 0.86734 0.87028 0.86869 0.84792 0.91337 0.76409 0.87923 0.89417 0.83008 0.83245 0.77947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.77 18.49 41.84 0.77 -7.00 16 2 C 0.27 4.48 10.80 -22.47 -0.24 4.24 16 3 C -0.20 -3.39 5.81 -104.50 -0.61 -4.00 16 4 C 0.14 2.63 8.97 -36.47 -0.33 2.30 16 5 C -0.20 -3.98 5.42 -104.94 -0.57 -4.55 16 6 C -0.03 -0.56 8.32 -39.06 -0.33 -0.89 16 7 C -0.22 -3.61 10.02 -39.63 -0.40 -4.01 16 8 C -0.05 -0.80 10.03 -39.48 -0.40 -1.19 16 9 C -0.23 -4.55 9.16 -39.45 -0.36 -4.91 16 10 C 0.18 3.96 6.67 -38.40 -0.26 3.70 16 11 O -0.15 -3.84 9.21 1.26 0.01 -3.83 16 12 C -0.40 -9.97 9.49 30.93 0.29 -9.68 16 13 H 0.10 2.28 5.20 -52.48 -0.27 2.00 16 14 C 0.04 1.12 5.49 -17.51 -0.10 1.03 16 15 N -0.84 -22.62 13.67 55.49 0.76 -21.86 16 16 Si 0.95 18.80 29.55 -169.99 -5.02 13.78 16 17 H -0.26 -5.03 7.11 56.52 0.40 -4.62 16 18 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 19 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 20 C 0.59 9.41 7.75 -12.66 -0.10 9.32 16 21 O -0.53 -9.96 16.30 5.24 0.09 -9.87 16 22 N -0.73 -9.58 5.50 -62.66 -0.34 -9.93 16 23 C 0.20 2.29 6.20 -5.19 -0.03 2.26 16 24 C -0.03 -0.38 6.69 -35.62 -0.24 -0.61 16 25 C -0.19 -1.84 10.81 -39.71 -0.43 -2.27 16 26 C -0.22 -1.89 10.91 -39.70 -0.43 -2.32 16 27 C -0.03 -0.27 12.09 29.42 0.36 0.08 16 28 O -0.17 -1.86 10.65 5.72 0.06 -1.79 16 29 H 0.16 3.06 7.61 -52.49 -0.40 2.67 16 30 H 0.11 1.86 6.57 -52.48 -0.34 1.52 16 31 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.13 2.58 5.63 -52.49 -0.30 2.28 16 34 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 35 H 0.40 5.01 7.34 -40.82 -0.30 4.71 16 36 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.15 1.32 8.06 -52.48 -0.42 0.90 16 39 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.20 0.90 8.06 -52.49 -0.42 0.47 16 LS Contribution 366.56 15.07 5.52 5.52 Total: -1.00 -29.92 366.56 -6.02 -35.94 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -3.71 Total: 10.53 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -4.16 Total: -11.50 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 1.19 Total: -38.79 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: 0.16 Total: -15.49 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.78 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.92 -6.02 -35.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022344692.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.540 kcal (2) G-P(sol) polarization free energy of solvation -29.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds