Wall clock time and date at job start Tue Mar 31 2020 08:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35993 * 116.99797 * 2 1 4 4 C 1.38250 * 120.16704 * 0.02562 * 3 2 1 5 5 C 1.38984 * 120.61834 * 180.02562 * 4 3 2 6 6 C 1.37739 * 119.63876 * 359.60842 * 5 4 3 7 7 C 1.38844 * 119.96540 * 0.32103 * 6 5 4 8 8 C 1.38288 * 120.54394 * 0.10984 * 7 6 5 9 9 O 1.35997 * 120.21748 * 179.76195 * 8 7 6 10 10 C 1.42898 * 117.00247 * 359.76679 * 9 8 7 11 11 C 1.50840 * 122.33233 * 180.60264 * 6 5 4 12 12 H 1.09000 * 109.43429 * 228.80866 * 11 6 5 13 13 C 1.50706 * 109.43690 * 108.89671 * 11 6 5 14 14 C 1.38230 * 119.99938 * 124.17451 * 13 11 6 15 15 C 1.38241 * 120.00109 * 179.76982 * 14 13 11 16 16 C 1.38238 * 119.99368 * 0.48459 * 15 14 13 17 17 C 1.38233 * 120.00044 * 359.79556 * 16 15 14 18 18 C 1.38225 * 120.00368 * 359.94978 * 17 16 15 19 19 N 1.46680 * 109.69061 * 348.87887 * 11 6 5 20 20 C 1.36941 * 121.34514 * 224.35574 * 19 11 6 21 21 H 1.07996 * 120.00149 * 332.25041 * 20 19 11 22 22 C 1.38814 * 119.99352 * 152.24874 * 20 19 11 23 23 N 1.31614 * 120.00183 * 339.03096 * 22 20 19 24 24 Si 1.86801 * 119.99493 * 159.03302 * 22 20 19 25 25 H 1.48501 * 109.47277 * 95.07218 * 24 22 20 26 26 H 1.48504 * 109.46992 * 215.06979 * 24 22 20 27 27 H 1.48501 * 109.47160 * 335.07165 * 24 22 20 28 28 C 1.47232 * 117.30293 * 44.33137 * 19 11 6 29 29 C 1.50629 * 117.51785 * 179.36585 * 5 4 3 30 30 H 1.09004 * 109.46754 * 299.99900 * 1 2 3 31 31 H 1.08997 * 109.47464 * 59.99381 * 1 2 3 32 32 H 1.08995 * 109.47196 * 180.02562 * 1 2 3 33 33 H 1.07998 * 119.68688 * 359.97438 * 4 3 2 34 34 H 1.07999 * 119.72792 * 179.88916 * 7 6 5 35 35 H 1.09001 * 109.46841 * 300.00004 * 10 9 8 36 36 H 1.08996 * 109.47126 * 59.99844 * 10 9 8 37 37 H 1.09004 * 109.47427 * 179.97438 * 10 9 8 38 38 H 1.08009 * 120.00210 * 0.02562 * 14 13 11 39 39 H 1.08000 * 119.99833 * 180.25167 * 15 14 13 40 40 H 1.08000 * 119.99113 * 179.76528 * 16 15 14 41 41 H 1.08002 * 119.99508 * 179.97438 * 17 16 15 42 42 H 1.07998 * 120.00096 * 180.02562 * 18 17 16 43 43 H 0.97005 * 119.99930 * 180.02562 * 23 22 20 44 44 H 1.08997 * 109.77781 * 55.23632 * 28 19 11 45 45 H 1.08998 * 109.78082 * 175.98801 * 28 19 11 46 46 H 1.09002 * 109.19669 * 40.07145 * 29 5 4 47 47 H 1.09003 * 109.16206 * 280.76850 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2968 2.3734 0.0005 5 6 1.9179 3.6167 0.0000 6 6 3.2933 3.6910 0.0071 7 6 4.0507 2.5273 0.0080 8 6 3.4359 1.2886 -0.0005 9 8 4.1843 0.1531 -0.0044 10 6 5.6044 0.3119 -0.0046 11 6 4.0301 5.0071 0.0204 12 1 4.8016 4.9987 -0.7495 13 6 4.6702 5.2100 1.3696 14 6 6.0305 5.4379 1.4619 15 6 6.6169 5.6287 2.6991 16 6 5.8446 5.5815 3.8447 17 6 4.4853 5.3478 3.7527 18 6 3.8980 5.1623 2.5152 19 7 3.0903 6.1023 -0.2424 20 6 3.4009 7.1146 -1.1107 21 1 4.4325 7.3907 -1.2714 22 6 2.3896 7.7857 -1.7844 23 7 1.2085 7.2230 -1.9280 24 14 2.7052 9.4874 -2.4873 25 1 3.0917 9.3689 -3.9162 26 1 1.4714 10.3061 -2.3745 27 1 3.8033 10.1399 -1.7300 28 6 1.7994 6.0687 0.4649 29 6 1.0340 4.8362 -0.0141 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 0.2184 2.3140 0.0005 34 1 5.1289 2.5900 0.0118 35 1 5.9079 0.8658 -0.8930 36 1 5.9087 0.8602 0.8870 37 1 6.0798 -0.6689 -0.0074 38 1 6.6345 5.4711 0.5671 39 1 7.6790 5.8108 2.7709 40 1 6.3035 5.7268 4.8115 41 1 3.8820 5.3105 4.6477 42 1 2.8360 4.9801 2.4433 43 1 0.5019 7.6918 -2.3991 44 1 1.9692 6.0028 1.5395 45 1 1.2299 6.9695 0.2361 46 1 0.1798 4.6674 0.6416 47 1 0.6775 5.0080 -1.0298 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026478262.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:47 Heat of formation + Delta-G solvation = 10.857482 kcal Electronic energy + Delta-G solvation = -30405.366872 eV Core-core repulsion = 26519.777165 eV Total energy + Delta-G solvation = -3885.589707 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 6.59 seconds Orbital eigenvalues (eV) -40.42237 -39.06799 -38.14554 -37.43393 -35.07379 -32.64556 -31.92565 -30.44451 -29.78394 -29.61735 -28.29109 -27.10159 -26.96509 -25.03898 -23.20931 -22.18537 -21.94602 -21.61368 -20.76511 -19.12867 -17.90762 -17.01485 -16.70665 -16.19193 -15.81268 -15.76549 -15.07023 -15.02570 -14.78822 -14.55688 -14.17519 -14.06860 -13.84118 -13.51192 -13.35650 -12.96352 -12.80404 -12.71879 -12.27519 -12.12893 -12.01937 -11.63714 -11.47061 -11.36472 -11.24060 -11.00109 -10.98204 -10.89352 -10.77647 -10.66530 -10.43939 -10.12951 -9.88795 -9.85352 -9.46716 -8.58353 -8.44957 -8.26254 -8.05797 -7.20885 -6.77050 -5.88657 -3.29494 1.73026 1.82558 1.87572 1.98905 3.33568 3.41881 3.45158 3.53941 3.56260 4.15860 4.24149 4.46470 5.09399 5.15034 5.26959 5.28069 5.29040 5.29955 5.32470 5.32937 5.38940 5.44179 5.50570 5.53797 5.57727 5.62203 5.66376 5.80386 5.87946 5.97215 6.00897 6.11258 6.23947 6.43809 6.47584 6.52275 6.54670 6.58945 6.69672 6.84457 6.90519 6.96053 7.08620 7.21643 7.34100 7.36625 7.44954 7.50736 7.54771 7.77286 7.92721 8.32940 9.09872 9.72008 10.31094 11.19295 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.008958 B = 0.005092 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3124.972048 B = 5497.899126 C = 7298.558061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.313 6.313 3 C 0.090 3.910 4 C -0.184 4.184 5 C -0.037 4.037 6 C -0.071 4.071 7 C -0.165 4.165 8 C 0.081 3.919 9 O -0.313 6.313 10 C 0.029 3.971 11 C 0.242 3.758 12 H 0.078 0.922 13 C -0.063 4.063 14 C -0.117 4.117 15 C -0.126 4.126 16 C -0.137 4.137 17 C -0.126 4.126 18 C -0.103 4.103 19 N -0.572 5.572 20 C -0.254 4.254 21 H 0.067 0.933 22 C 0.010 3.990 23 N -0.892 5.892 24 Si 0.900 3.100 25 H -0.288 1.288 26 H -0.289 1.289 27 H -0.278 1.278 28 C 0.158 3.842 29 C -0.095 4.095 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.093 0.907 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.093 0.907 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.124 0.876 43 H 0.254 0.746 44 H 0.017 0.983 45 H 0.089 0.911 46 H 0.048 0.952 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.555 -10.314 7.413 13.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.046 3.954 4 C -0.203 4.203 5 C -0.037 4.037 6 C -0.073 4.073 7 C -0.184 4.184 8 C 0.037 3.963 9 O -0.227 6.227 10 C -0.066 4.066 11 C 0.134 3.866 12 H 0.096 0.904 13 C -0.066 4.066 14 C -0.136 4.136 15 C -0.144 4.144 16 C -0.155 4.155 17 C -0.144 4.144 18 C -0.122 4.122 19 N -0.291 5.291 20 C -0.383 4.383 21 H 0.085 0.915 22 C -0.189 4.189 23 N -0.535 5.535 24 Si 0.729 3.271 25 H -0.215 1.215 26 H -0.215 1.215 27 H -0.204 1.204 28 C 0.033 3.967 29 C -0.133 4.133 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.112 0.888 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.112 0.888 38 H 0.134 0.866 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.142 0.858 43 H 0.064 0.936 44 H 0.035 0.965 45 H 0.107 0.893 46 H 0.066 0.934 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.404 -10.581 7.279 13.286 hybrid contribution 0.026 1.154 -0.464 1.244 sum 3.429 -9.427 6.815 12.127 Atomic orbital electron populations 1.22969 0.79280 1.03173 1.01225 1.86106 1.20468 1.26486 1.89666 1.18060 0.88985 0.84800 1.03586 1.21102 0.99466 0.91229 1.08485 1.19559 0.93280 0.94381 0.96504 1.19925 0.93149 0.94909 0.99295 1.20959 0.99923 0.90634 1.06872 1.18003 0.87960 0.85779 1.04601 1.86098 1.18048 1.28774 1.89807 1.22966 0.79394 1.03058 1.01231 1.18314 0.92030 0.85028 0.91235 0.90405 1.20756 0.93184 0.95950 0.96694 1.21017 0.94599 1.00732 0.97224 1.20997 0.99192 1.01371 0.92829 1.20956 0.94247 1.02409 0.97872 1.21078 0.94934 1.00999 0.97415 1.21245 1.00064 0.98985 0.91860 1.44036 1.14161 1.22742 1.48135 1.19070 0.92954 1.08172 1.18063 0.91541 1.24955 0.96852 0.99554 0.97576 1.70005 1.03897 1.36053 1.43582 0.86329 0.77324 0.84633 0.78777 1.21482 1.21524 1.20370 1.20934 0.86796 0.97386 0.91601 1.20983 0.95760 0.92608 1.03942 0.92999 0.92867 0.88823 0.85484 0.85488 0.92925 0.92955 0.88843 0.86624 0.86929 0.87098 0.86953 0.85822 0.93601 0.96487 0.89279 0.93398 0.87813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.31 -5.13 10.29 -33.94 -0.35 -5.48 16 3 C 0.09 1.61 6.69 -39.23 -0.26 1.35 16 4 C -0.18 -3.24 8.60 -39.30 -0.34 -3.58 16 5 C -0.04 -0.72 5.77 -104.56 -0.60 -1.32 16 6 C -0.07 -1.38 4.62 -104.51 -0.48 -1.87 16 7 C -0.16 -2.90 8.42 -39.34 -0.33 -3.23 16 8 C 0.08 1.45 6.69 -39.22 -0.26 1.18 16 9 O -0.31 -5.15 10.29 -33.96 -0.35 -5.50 16 10 C 0.03 0.34 9.82 101.05 0.99 1.33 16 11 C 0.24 4.96 2.63 -70.06 -0.18 4.78 16 12 H 0.08 1.62 7.72 -51.93 -0.40 1.22 16 13 C -0.06 -1.16 4.81 -104.62 -0.50 -1.67 16 14 C -0.12 -1.92 9.67 -39.58 -0.38 -2.31 16 15 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16 16 C -0.14 -1.95 10.05 -39.58 -0.40 -2.35 16 17 C -0.13 -1.95 10.05 -39.59 -0.40 -2.35 16 18 C -0.10 -1.84 8.20 -39.59 -0.32 -2.16 16 19 N -0.57 -13.49 2.58 -167.63 -0.43 -13.92 16 20 C -0.25 -6.62 9.64 -15.06 -0.15 -6.76 16 21 H 0.07 1.73 7.91 -52.49 -0.42 1.32 16 22 C 0.01 0.27 4.85 -17.43 -0.08 0.18 16 23 N -0.89 -24.00 10.31 55.49 0.57 -23.43 16 24 Si 0.90 20.95 29.60 -169.99 -5.03 15.92 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 28 C 0.16 3.53 5.19 -3.75 -0.02 3.51 16 29 C -0.09 -1.95 5.77 -28.03 -0.16 -2.11 16 30 H 0.05 0.55 7.66 -51.93 -0.40 0.16 16 31 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.13 1.95 6.26 -52.49 -0.33 1.62 16 34 H 0.13 1.97 6.28 -52.49 -0.33 1.65 16 35 H 0.05 0.59 7.68 -51.93 -0.40 0.19 16 36 H 0.05 0.58 7.66 -51.93 -0.40 0.19 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.12 1.74 7.95 -52.48 -0.42 1.32 16 39 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 40 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 41 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 42 H 0.12 2.27 5.61 -52.49 -0.29 1.97 16 43 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 44 H 0.02 0.36 4.92 -51.93 -0.26 0.11 16 45 H 0.09 2.22 6.12 -51.93 -0.32 1.90 16 46 H 0.05 0.87 8.11 -51.93 -0.42 0.45 16 47 H 0.10 2.45 7.04 -51.93 -0.37 2.09 16 LS Contribution 373.06 15.07 5.62 5.62 Total: -1.00 -29.80 373.06 -9.65 -39.45 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.39 Total: 5.59 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: -3.30 Total: -18.26 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.14 Total: -37.35 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: -0.70 Total: -10.98 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.80 -9.65 -39.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026478262.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.312 kcal (2) G-P(sol) polarization free energy of solvation -29.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.59 seconds