Wall clock time and date at job start Tue Mar 31 2020 08:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35995 * 117.00009 * 2 1 4 4 C 1.38243 * 120.16760 * 359.97438 * 3 2 1 5 5 C 1.38982 * 120.62536 * 179.97438 * 4 3 2 6 6 C 1.37743 * 119.63223 * 359.65967 * 5 4 3 7 7 C 1.38837 * 119.97106 * 0.62900 * 6 5 4 8 8 C 1.38304 * 120.54220 * 359.50735 * 7 6 5 9 9 O 1.35992 * 120.21967 * 180.02562 * 8 7 6 10 10 C 1.42895 * 117.00013 * 0.02562 * 9 8 7 11 11 C 1.50470 * 122.30068 * 181.14539 * 6 5 4 12 12 H 1.08998 * 109.25969 * 108.88821 * 11 6 5 13 13 C 1.50690 * 109.39841 * 228.62381 * 11 6 5 14 14 C 1.38238 * 120.00179 * 80.18739 * 13 11 6 15 15 C 1.38231 * 120.00003 * 179.78941 * 14 13 11 16 16 C 1.38235 * 120.00456 * 0.45961 * 15 14 13 17 17 C 1.38233 * 119.99518 * 359.77135 * 16 15 14 18 18 C 1.38232 * 120.00184 * 260.46111 * 13 11 6 19 19 N 1.46676 * 109.90125 * 348.80033 * 11 6 5 20 20 C 1.36931 * 121.33566 * 224.35235 * 19 11 6 21 21 H 1.08004 * 120.00492 * 331.37318 * 20 19 11 22 22 C 1.38816 * 120.00103 * 151.37628 * 20 19 11 23 23 N 1.31623 * 119.99813 * 343.07852 * 22 20 19 24 24 Si 1.86793 * 120.00255 * 162.80541 * 22 20 19 25 25 H 1.48493 * 109.47263 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47278 * 120.00179 * 24 22 20 27 27 H 1.48497 * 109.47305 * 240.00016 * 24 22 20 28 28 C 1.47230 * 117.32011 * 44.07526 * 19 11 6 29 29 C 1.50622 * 117.53264 * 179.55972 * 5 4 3 30 30 H 1.09006 * 109.46902 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47355 * 300.00319 * 1 2 3 32 32 H 1.08997 * 109.47121 * 60.00518 * 1 2 3 33 33 H 1.08007 * 119.68674 * 359.95332 * 4 3 2 34 34 H 1.08003 * 119.73402 * 179.51823 * 7 6 5 35 35 H 1.08999 * 109.47272 * 179.97438 * 10 9 8 36 36 H 1.08999 * 109.47479 * 299.99630 * 10 9 8 37 37 H 1.09003 * 109.47483 * 60.00189 * 10 9 8 38 38 H 1.07999 * 119.99763 * 359.97438 * 14 13 11 39 39 H 1.08007 * 120.00059 * 180.25040 * 15 14 13 40 40 H 1.07996 * 120.00693 * 179.79140 * 16 15 14 41 41 H 1.08003 * 119.99919 * 179.97438 * 17 16 15 42 42 H 1.08006 * 120.00403 * 359.97438 * 18 13 11 43 43 H 0.96997 * 120.00444 * 179.97438 * 23 22 20 44 44 H 1.08998 * 109.77596 * 55.58404 * 28 19 11 45 45 H 1.09003 * 109.77676 * 176.32852 * 28 19 11 46 46 H 1.08999 * 109.20244 * 39.55368 * 29 5 4 47 47 H 1.08998 * 109.19944 * 280.26933 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2968 2.3733 -0.0005 5 6 1.9179 3.6167 0.0000 6 6 3.2933 3.6909 0.0082 7 6 4.0507 2.5274 0.0026 8 6 3.4359 1.2885 -0.0009 9 8 4.1842 0.1530 -0.0058 10 6 5.6043 0.3120 -0.0065 11 6 4.0275 5.0041 0.0346 12 1 4.4888 5.1384 1.0130 13 6 5.0971 5.0009 -1.0268 14 6 4.7644 5.2560 -2.3441 15 6 5.7463 5.2574 -3.3171 16 6 7.0594 4.9944 -2.9744 17 6 7.3913 4.7346 -1.6579 18 6 6.4101 4.7374 -0.6842 19 7 3.0915 6.1046 -0.2189 20 6 3.4069 7.1244 -1.0766 21 1 4.4388 7.4082 -1.2218 22 6 2.4004 7.7934 -1.7594 23 7 1.2013 7.2588 -1.8534 24 14 2.7455 9.4558 -2.5381 25 1 4.1583 9.8369 -2.2858 26 1 2.5077 9.3758 -4.0017 27 1 1.8446 10.4767 -1.9454 28 6 1.7968 6.0654 0.4811 29 6 1.0342 4.8364 -0.0109 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 0.2184 2.3141 -0.0017 34 1 5.1289 2.5901 0.0012 35 1 6.0797 -0.6689 -0.0101 36 1 5.9075 0.8662 -0.8947 37 1 5.9091 0.8597 0.8853 38 1 3.7379 5.4571 -2.6126 39 1 5.4870 5.4607 -4.3457 40 1 7.8260 4.9922 -3.7351 41 1 8.4172 4.5287 -1.3902 42 1 6.6695 4.5341 0.3444 43 1 0.4978 7.7264 -2.3302 44 1 1.9609 5.9917 1.5561 45 1 1.2284 6.9678 0.2559 46 1 0.1761 4.6632 0.6386 47 1 0.6830 5.0155 -1.0271 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026478270.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:58 Heat of formation + Delta-G solvation = 11.251638 kcal Electronic energy + Delta-G solvation = -30690.915017 eV Core-core repulsion = 26805.342402 eV Total energy + Delta-G solvation = -3885.572615 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 17.21 seconds Orbital eigenvalues (eV) -40.40615 -38.98336 -38.13231 -37.39482 -35.11482 -32.72123 -31.91246 -30.26999 -29.73556 -29.51641 -28.08850 -27.09722 -26.92971 -25.21245 -23.01055 -22.20918 -21.84783 -21.53104 -20.42527 -19.18769 -17.90144 -17.02267 -16.36961 -16.23177 -15.92146 -15.73702 -15.02233 -14.98793 -14.63120 -14.47993 -14.17140 -13.99154 -13.84113 -13.39956 -13.21527 -12.90927 -12.73644 -12.57861 -12.19293 -12.13655 -11.99721 -11.66313 -11.50557 -11.30804 -11.16591 -10.99319 -10.96470 -10.86994 -10.85028 -10.45026 -10.35713 -10.13456 -9.83897 -9.79190 -9.54513 -8.60359 -8.25478 -8.15103 -7.90950 -7.19735 -6.71432 -5.90402 -3.31958 1.74519 1.90128 2.05007 2.11901 3.31506 3.40857 3.43734 3.54486 3.57637 4.16670 4.38371 4.48404 5.11282 5.15744 5.26639 5.29663 5.30542 5.33079 5.34952 5.45549 5.49098 5.52759 5.53680 5.58035 5.62510 5.66669 5.79286 5.81632 5.94801 6.06121 6.16804 6.28098 6.43389 6.44858 6.52534 6.56202 6.64374 6.71220 6.83051 6.86686 7.03950 7.09896 7.25216 7.34329 7.36627 7.45784 7.47248 7.59308 7.73800 7.77602 7.93611 8.32291 9.09323 9.69397 10.29785 11.16149 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.010692 B = 0.005253 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.257396 B = 5328.652811 C = 7264.750782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.313 6.313 3 C 0.090 3.910 4 C -0.184 4.184 5 C -0.038 4.038 6 C -0.074 4.074 7 C -0.165 4.165 8 C 0.080 3.920 9 O -0.313 6.313 10 C 0.029 3.971 11 C 0.243 3.757 12 H 0.046 0.954 13 C -0.062 4.062 14 C -0.053 4.053 15 C -0.140 4.140 16 C -0.129 4.129 17 C -0.142 4.142 18 C -0.125 4.125 19 N -0.584 5.584 20 C -0.236 4.236 21 H 0.070 0.930 22 C 0.006 3.994 23 N -0.894 5.894 24 Si 0.898 3.102 25 H -0.277 1.277 26 H -0.290 1.290 27 H -0.289 1.289 28 C 0.167 3.833 29 C -0.092 4.092 30 H 0.093 0.907 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.093 0.907 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.144 0.856 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.254 0.746 44 H 0.007 0.993 45 H 0.096 0.904 46 H 0.047 0.953 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.766 -10.411 3.051 11.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.045 3.955 4 C -0.203 4.203 5 C -0.038 4.038 6 C -0.076 4.076 7 C -0.184 4.184 8 C 0.035 3.965 9 O -0.227 6.227 10 C -0.066 4.066 11 C 0.137 3.863 12 H 0.063 0.937 13 C -0.062 4.062 14 C -0.071 4.071 15 C -0.158 4.158 16 C -0.147 4.147 17 C -0.161 4.161 18 C -0.144 4.144 19 N -0.307 5.307 20 C -0.365 4.365 21 H 0.088 0.912 22 C -0.193 4.193 23 N -0.538 5.538 24 Si 0.728 3.272 25 H -0.202 1.202 26 H -0.217 1.217 27 H -0.215 1.215 28 C 0.042 3.958 29 C -0.131 4.131 30 H 0.112 0.888 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.145 0.855 34 H 0.148 0.852 35 H 0.112 0.888 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.162 0.838 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.064 0.936 44 H 0.025 0.975 45 H 0.114 0.886 46 H 0.066 0.934 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.639 -10.686 2.971 11.673 hybrid contribution 0.071 1.099 -0.611 1.259 sum 3.711 -9.587 2.360 10.547 Atomic orbital electron populations 1.22965 0.79298 1.03165 1.01214 1.86104 1.20456 1.26504 1.89670 1.18071 0.88993 0.84798 1.03589 1.21098 0.99445 0.91231 1.08558 1.19587 0.93264 0.94461 0.96523 1.19900 0.93105 0.95020 0.99577 1.21058 1.00187 0.90563 1.06566 1.18031 0.87951 0.85837 1.04643 1.86092 1.18056 1.28769 1.89808 1.22962 0.79371 1.03024 1.01274 1.18328 0.88627 0.85204 0.94144 0.93672 1.19808 0.93227 0.98192 0.95004 1.21388 1.01067 0.92889 0.91794 1.21130 0.93279 1.02136 0.99281 1.20957 0.96225 1.01551 0.96006 1.20824 0.98311 1.03551 0.93379 1.20923 0.92807 1.01963 0.98663 1.44258 1.14992 1.20990 1.50417 1.19100 0.93176 1.06692 1.17521 0.91197 1.25015 0.96692 0.99602 0.98027 1.69951 1.02702 1.37055 1.44102 0.86270 0.77929 0.84318 0.78675 1.20181 1.21699 1.21528 1.20793 0.86445 0.97693 0.90883 1.20968 0.95737 0.92557 1.03826 0.88826 0.92987 0.92900 0.85495 0.85202 0.88850 0.92827 0.93051 0.83796 0.87062 0.87404 0.87279 0.87153 0.93555 0.97500 0.88620 0.93426 0.87959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.31 -5.17 10.29 -33.94 -0.35 -5.52 16 3 C 0.09 1.62 6.69 -39.23 -0.26 1.36 16 4 C -0.18 -3.26 8.60 -39.30 -0.34 -3.60 16 5 C -0.04 -0.75 5.76 -104.57 -0.60 -1.35 16 6 C -0.07 -1.46 5.41 -104.69 -0.57 -2.03 16 7 C -0.16 -2.94 8.09 -39.34 -0.32 -3.26 16 8 C 0.08 1.44 6.70 -39.21 -0.26 1.18 16 9 O -0.31 -5.23 10.29 -33.93 -0.35 -5.58 16 10 C 0.03 0.36 9.81 101.05 0.99 1.35 16 11 C 0.24 5.01 3.08 -70.26 -0.22 4.79 16 12 H 0.05 0.92 8.00 -51.93 -0.42 0.51 16 13 C -0.06 -1.21 3.35 -104.63 -0.35 -1.56 16 14 C -0.05 -1.10 7.49 -39.58 -0.30 -1.40 16 15 C -0.14 -2.53 10.05 -39.59 -0.40 -2.93 16 16 C -0.13 -2.06 10.05 -39.58 -0.40 -2.45 16 17 C -0.14 -2.20 10.05 -39.58 -0.40 -2.59 16 18 C -0.13 -2.10 8.63 -39.58 -0.34 -2.44 16 19 N -0.58 -13.53 2.84 -167.85 -0.48 -14.00 16 20 C -0.24 -5.88 6.29 -15.06 -0.09 -5.98 16 21 H 0.07 1.81 6.80 -52.48 -0.36 1.46 16 22 C 0.01 0.15 4.96 -17.43 -0.09 0.06 16 23 N -0.89 -23.14 10.09 55.49 0.56 -22.58 16 24 Si 0.90 20.66 29.59 -169.99 -5.03 15.63 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 28 C 0.17 3.71 5.58 -3.76 -0.02 3.69 16 29 C -0.09 -1.89 5.76 -28.03 -0.16 -2.05 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 32 H 0.05 0.59 7.66 -51.93 -0.40 0.20 16 33 H 0.13 1.95 6.26 -52.48 -0.33 1.62 16 34 H 0.13 2.10 4.92 -52.48 -0.26 1.85 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.05 0.65 7.67 -51.93 -0.40 0.25 16 37 H 0.05 0.57 7.67 -51.93 -0.40 0.18 16 38 H 0.14 3.46 6.64 -52.49 -0.35 3.11 16 39 H 0.11 1.84 8.06 -52.48 -0.42 1.41 16 40 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 41 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 42 H 0.11 1.63 8.04 -52.48 -0.42 1.20 16 43 H 0.25 6.48 8.31 -40.82 -0.34 6.14 16 44 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 45 H 0.10 2.33 6.02 -51.93 -0.31 2.02 16 46 H 0.05 0.86 8.10 -51.93 -0.42 0.44 16 47 H 0.10 2.37 7.05 -51.93 -0.37 2.00 16 LS Contribution 369.99 15.07 5.58 5.58 Total: -1.00 -28.24 369.99 -9.69 -37.93 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -6.49 Total: 6.43 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -3.13 Total: -17.88 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.08 Total: -36.59 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: -0.70 Total: -11.10 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.24 -9.69 -37.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026478270.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.178 kcal (2) G-P(sol) polarization free energy of solvation -28.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 17.22 seconds