Wall clock time and date at job start Tue Mar 31 2020 06:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47403 * 2 1 4 4 C 1.53005 * 109.46815 * 240.00162 * 2 1 3 5 5 C 1.50697 * 109.47366 * 120.00411 * 2 1 3 6 6 C 1.38520 * 118.95214 * 239.73147 * 5 2 1 7 7 C 1.38332 * 122.15728 * 179.97438 * 6 5 2 8 8 C 1.39282 * 117.20827 * 0.49316 * 7 6 5 9 9 C 1.42670 * 120.46383 * 359.41600 * 8 7 6 10 10 C 1.37180 * 118.94853 * 59.99283 * 5 2 1 11 11 C 1.43681 * 106.04147 * 180.71975 * 9 8 7 12 12 C 1.34865 * 106.38213 * 0.60042 * 11 9 8 13 13 N 1.36441 * 111.45113 * 357.86479 * 12 11 9 14 14 C 1.46991 * 122.52562 * 184.24539 * 13 12 11 15 15 C 1.53117 * 109.55605 * 343.36278 * 14 13 12 16 16 N 1.47218 * 111.02097 * 43.83995 * 15 14 13 17 17 C 1.36943 * 121.39453 * 115.41193 * 16 15 14 18 18 H 1.08002 * 119.99597 * 152.22151 * 17 16 15 19 19 C 1.38810 * 120.00097 * 332.22049 * 17 16 15 20 20 N 1.31623 * 119.99939 * 342.69643 * 19 17 16 21 21 Si 1.86800 * 120.00088 * 162.69391 * 19 17 16 22 22 H 1.48500 * 109.46627 * 90.00089 * 21 19 17 23 23 H 1.48492 * 109.47140 * 210.00131 * 21 19 17 24 24 H 1.48493 * 109.46994 * 330.00488 * 21 19 17 25 25 C 1.47691 * 117.21285 * 295.43385 * 16 15 14 26 26 H 1.09005 * 110.74188 * 286.78417 * 25 16 15 27 27 C 1.51852 * 111.35370 * 163.15927 * 25 16 15 28 28 C 1.51110 * 115.76423 * 205.06554 * 27 25 16 29 29 C 1.51273 * 135.13741 * 182.40815 * 11 9 8 30 30 H 1.08997 * 109.47145 * 300.00023 * 1 2 3 31 31 H 1.09003 * 109.47234 * 59.99742 * 1 2 3 32 32 H 1.08994 * 109.47362 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47303 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47136 * 300.00318 * 3 2 1 35 35 H 1.08997 * 109.46990 * 59.99882 * 3 2 1 36 36 H 1.08996 * 109.47146 * 299.99979 * 4 2 1 37 37 H 1.09000 * 109.47586 * 60.00287 * 4 2 1 38 38 H 1.09008 * 109.46607 * 180.02562 * 4 2 1 39 39 H 1.08010 * 118.92130 * 0.17966 * 6 5 2 40 40 H 1.08000 * 121.39747 * 180.22335 * 7 6 5 41 41 H 1.07997 * 121.39247 * 359.95999 * 10 5 2 42 42 H 1.08999 * 109.44982 * 103.38960 * 14 13 12 43 43 H 1.08996 * 109.45731 * 223.33655 * 14 13 12 44 44 H 1.08998 * 109.16596 * 164.22937 * 15 14 13 45 45 H 1.08996 * 109.17189 * 283.44364 * 15 14 13 46 46 H 0.97002 * 120.00087 * 179.97438 * 20 19 17 47 47 H 1.09001 * 108.22395 * 326.69963 * 27 25 16 48 48 H 1.09000 * 108.22828 * 83.43362 * 27 25 16 49 49 H 1.09000 * 107.98361 * 121.73219 * 28 27 25 50 50 H 1.08995 * 107.98602 * 238.03967 * 28 27 25 51 51 H 1.08998 * 109.77421 * 17.19866 * 29 11 9 52 52 H 1.09004 * 108.78332 * 257.37319 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0324 -0.7105 1.2304 6 6 2.8319 -0.0182 2.1249 7 6 3.3287 -0.6049 3.2750 8 6 3.0012 -1.9395 3.5016 9 6 2.1757 -2.6485 2.5789 10 6 1.6877 -2.0238 1.4260 11 6 2.0251 -3.9723 3.1169 12 6 2.7142 -3.9925 4.2760 13 7 3.3372 -2.8007 4.5070 14 6 4.2290 -2.5846 5.6552 15 6 4.0042 -3.6874 6.6935 16 7 3.9057 -5.0073 6.0490 17 6 4.8363 -5.9851 6.2799 18 1 4.5583 -7.0255 6.1969 19 6 6.1367 -5.6392 6.6206 20 7 6.5730 -4.4178 6.3962 21 14 7.2675 -6.9069 7.3974 22 1 8.0039 -7.6325 6.3314 23 1 8.2365 -6.2240 8.2916 24 1 6.4608 -7.8721 8.1866 25 6 2.7616 -5.2327 5.1426 26 1 1.8369 -5.3451 5.7088 27 6 2.9934 -6.4383 4.2489 28 6 2.2408 -6.4388 2.9385 29 6 1.3395 -5.2422 2.6636 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6766 -0.2074 -2.1393 38 1 3.1300 -0.7216 -1.2491 39 1 3.0727 1.0145 1.9194 40 1 3.9482 -0.0524 3.9660 41 1 1.0666 -2.5537 0.7191 42 1 5.2656 -2.6082 5.3191 43 1 4.0149 -1.6146 6.1038 44 1 4.8380 -3.6933 7.3955 45 1 3.0813 -3.4847 7.2368 46 1 7.4816 -4.1759 6.6346 47 1 4.0594 -6.5002 4.0297 48 1 2.7122 -7.3333 4.8038 49 1 2.9705 -6.5029 2.1313 50 1 1.6260 -7.3382 2.9039 51 1 1.1255 -5.1851 1.5964 52 1 0.4069 -5.3542 3.2167 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026907355.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:49 Heat of formation + Delta-G solvation = 70.339486 kcal Electronic energy + Delta-G solvation = -30632.481011 eV Core-core repulsion = 26983.022394 eV Total energy + Delta-G solvation = -3649.458617 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.205 amu Computer time = 4.82 seconds Orbital eigenvalues (eV) -41.17399 -38.76996 -36.64049 -35.53308 -34.28852 -32.00074 -31.00427 -30.21114 -28.77663 -28.29949 -27.18929 -27.03287 -26.34028 -24.08034 -23.78390 -22.06009 -21.58611 -20.09573 -19.78924 -18.72707 -17.69156 -16.81576 -15.95505 -15.72646 -15.32893 -15.18170 -14.64433 -14.38900 -14.25060 -14.14121 -13.77238 -13.44792 -13.34004 -13.21124 -12.77305 -12.58703 -12.47970 -12.43007 -12.30182 -12.00668 -11.84763 -11.74376 -11.65884 -11.43997 -11.25228 -11.05382 -10.97330 -10.88051 -10.67225 -10.63517 -10.40168 -10.32210 -10.17080 -9.91214 -9.87389 -9.77328 -9.68607 -8.95182 -8.71148 -7.30250 -6.96288 -6.76034 -5.99902 -3.42171 1.62317 2.14666 3.27548 3.34945 3.35914 3.37417 3.58313 4.33344 4.34654 4.77755 4.87091 5.01103 5.08845 5.17954 5.19040 5.34590 5.37478 5.43945 5.47565 5.53079 5.59129 5.62455 5.64227 5.74207 5.79101 5.87105 5.88569 5.90615 5.96698 6.04895 6.07557 6.08167 6.11521 6.17263 6.24799 6.26273 6.29068 6.34321 6.37098 6.38306 6.47947 6.51154 6.65366 6.71734 6.82078 6.97940 7.05206 7.08347 7.14973 7.21099 7.33076 7.54562 7.65273 7.93602 8.10034 8.20078 8.96419 9.58292 10.16597 11.09914 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017598 B = 0.003430 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.744158 B = 8161.843220 C = 9031.473734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.023 4.023 3 C -0.141 4.141 4 C -0.137 4.137 5 C -0.111 4.111 6 C -0.119 4.119 7 C -0.124 4.124 8 C 0.088 3.912 9 C -0.080 4.080 10 C -0.072 4.072 11 C -0.212 4.212 12 C 0.088 3.912 13 N -0.447 5.447 14 C 0.097 3.903 15 C 0.158 3.842 16 N -0.589 5.589 17 C -0.249 4.249 18 H 0.074 0.926 19 C 0.005 3.995 20 N -0.903 5.903 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.289 1.289 24 H -0.278 1.278 25 C 0.230 3.770 26 H 0.055 0.945 27 C -0.108 4.108 28 C -0.107 4.107 29 C -0.027 4.027 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.100 0.900 43 H 0.057 0.943 44 H 0.109 0.891 45 H 0.012 0.988 46 H 0.256 0.744 47 H 0.080 0.920 48 H 0.058 0.942 49 H 0.053 0.947 50 H 0.054 0.946 51 H 0.061 0.939 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.940 6.738 -9.459 15.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.023 4.023 3 C -0.198 4.198 4 C -0.194 4.194 5 C -0.112 4.112 6 C -0.138 4.138 7 C -0.145 4.145 8 C -0.020 4.020 9 C -0.086 4.086 10 C -0.090 4.090 11 C -0.219 4.219 12 C -0.025 4.025 13 N -0.124 5.124 14 C -0.025 4.025 15 C 0.032 3.968 16 N -0.312 5.312 17 C -0.378 4.378 18 H 0.091 0.909 19 C -0.194 4.194 20 N -0.547 5.547 21 Si 0.736 3.264 22 H -0.213 1.213 23 H -0.215 1.215 24 H -0.204 1.204 25 C 0.123 3.877 26 H 0.072 0.928 27 C -0.147 4.147 28 C -0.146 4.146 29 C -0.064 4.064 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.118 0.882 43 H 0.076 0.924 44 H 0.126 0.874 45 H 0.030 0.970 46 H 0.066 0.934 47 H 0.099 0.901 48 H 0.077 0.923 49 H 0.072 0.928 50 H 0.073 0.927 51 H 0.080 0.920 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.497 6.839 -9.065 14.803 hybrid contribution 0.998 -0.363 0.409 1.138 sum -8.499 6.475 -8.656 13.751 Atomic orbital electron populations 1.21883 0.94368 1.01861 1.01218 1.19391 0.95156 0.94648 0.93151 1.21945 1.01123 0.95450 1.01308 1.21893 1.01221 1.00174 0.96121 1.19047 1.01337 0.94167 0.96653 1.20628 0.99523 0.99531 0.94122 1.20279 1.03487 0.91813 0.98912 1.18655 1.00713 0.92125 0.90533 1.18576 1.01480 0.92994 0.95505 1.20184 0.99765 0.93507 0.95560 1.19705 1.10266 0.94404 0.97503 1.21655 0.94591 0.88900 0.97403 1.43737 1.37865 1.09653 1.21147 1.22690 0.94369 0.99518 0.85893 1.20956 0.99600 0.83143 0.93147 1.44475 1.25787 1.11775 1.49157 1.19102 0.88615 0.87859 1.42253 0.90881 1.25037 0.96381 0.96830 1.01151 1.69920 1.16700 1.18843 1.49286 0.86230 0.80349 0.80709 0.79111 1.21314 1.21500 1.20351 1.19531 0.91911 0.88200 0.88042 0.92760 1.20924 1.02443 0.96932 0.94361 1.20930 0.98462 0.97337 0.97842 1.19640 0.96890 0.90023 0.99890 0.92685 0.93036 0.92527 0.92382 0.93021 0.92416 0.92526 0.93020 0.92637 0.86537 0.86417 0.86444 0.88185 0.92417 0.87358 0.96971 0.93400 0.90122 0.92281 0.92812 0.92695 0.92019 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.27 37.16 0.31 -1.10 16 2 C -0.02 -0.27 0.84 -155.66 -0.13 -0.40 16 3 C -0.14 -1.42 7.10 37.16 0.26 -1.15 16 4 C -0.14 -1.47 8.27 37.16 0.31 -1.16 16 5 C -0.11 -1.62 4.76 -104.90 -0.50 -2.11 16 6 C -0.12 -1.80 8.88 -39.44 -0.35 -2.15 16 7 C -0.12 -2.15 10.23 -39.16 -0.40 -2.55 16 8 C 0.09 1.76 6.87 -83.66 -0.57 1.19 16 9 C -0.08 -1.53 6.27 -105.44 -0.66 -2.19 16 10 C -0.07 -1.15 8.75 -39.34 -0.34 -1.50 16 11 C -0.21 -4.08 6.38 -103.42 -0.66 -4.74 16 12 C 0.09 1.85 6.10 -81.41 -0.50 1.36 16 13 N -0.45 -9.55 3.19 -108.75 -0.35 -9.90 16 14 C 0.10 2.07 7.15 -3.71 -0.03 2.04 16 15 C 0.16 3.57 5.39 -3.59 -0.02 3.55 16 16 N -0.59 -14.02 2.98 -165.71 -0.49 -14.51 16 17 C -0.25 -6.34 8.21 -15.06 -0.12 -6.47 16 18 H 0.07 1.82 7.28 -52.49 -0.38 1.44 16 19 C 0.00 0.12 4.94 -17.43 -0.09 0.04 16 20 N -0.90 -24.03 10.20 55.49 0.57 -23.46 16 21 Si 0.91 20.60 29.59 -169.99 -5.03 15.57 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 C 0.23 4.81 3.61 -68.68 -0.25 4.56 16 26 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 27 C -0.11 -2.04 4.43 -28.27 -0.13 -2.17 16 28 C -0.11 -1.69 5.81 -28.04 -0.16 -1.86 16 29 C -0.03 -0.42 6.17 -27.96 -0.17 -0.59 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.59 7.33 -51.93 -0.38 0.21 16 33 H 0.06 0.59 7.44 -51.93 -0.39 0.20 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.57 7.46 -51.93 -0.39 0.18 16 36 H 0.06 0.61 7.33 -51.93 -0.38 0.23 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 39 H 0.12 1.49 5.64 -52.48 -0.30 1.19 16 40 H 0.12 1.87 8.06 -52.49 -0.42 1.44 16 41 H 0.12 1.66 7.05 -52.49 -0.37 1.29 16 42 H 0.10 2.40 7.17 -51.93 -0.37 2.02 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.11 2.64 6.00 -51.93 -0.31 2.33 16 45 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 47 H 0.08 1.77 7.07 -51.93 -0.37 1.40 16 48 H 0.06 1.03 8.09 -51.93 -0.42 0.61 16 49 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 50 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 52 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 387.61 15.07 5.84 5.84 Total: -1.00 -27.65 387.61 -12.35 -40.00 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -8.68 Total: 3.88 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -4.20 Total: -17.41 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -0.28 Total: -47.88 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.57 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -27.65 -12.35 -40.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026907355.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.338 kcal (2) G-P(sol) polarization free energy of solvation -27.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.82 seconds