Wall clock time and date at job start Tue Mar 31 2020 05:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38234 * 119.99895 * 2 1 4 4 C 1.38240 * 120.00062 * 180.32314 * 3 2 1 5 5 C 1.38234 * 119.99686 * 359.92348 * 4 3 2 6 6 C 1.50703 * 119.99499 * 180.02562 * 5 4 3 7 7 H 1.09007 * 109.46774 * 160.02375 * 6 5 4 8 8 N 1.46897 * 109.47320 * 40.02594 * 6 5 4 9 9 C 1.46897 * 110.99963 * 154.99438 * 8 6 5 10 10 C 1.50705 * 109.47006 * 180.02562 * 9 8 6 11 11 O 1.21280 * 119.99844 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00003 * 180.02562 * 10 9 8 13 13 C 1.46494 * 119.99919 * 180.02562 * 12 10 9 14 14 C 1.50705 * 109.47040 * 179.97438 * 13 12 10 15 15 H 1.07993 * 119.99806 * 0.02562 * 14 13 12 16 16 C 1.37886 * 119.99868 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99794 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99621 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47050 * 90.00386 * 18 16 14 20 20 H 1.48498 * 109.46733 * 210.00075 * 18 16 14 21 21 H 1.48495 * 109.47369 * 330.00082 * 18 16 14 22 22 C 1.50694 * 109.47401 * 280.02352 * 6 5 4 23 23 C 1.38235 * 120.00039 * 79.72716 * 22 6 5 24 24 C 1.38242 * 120.00059 * 179.78748 * 23 22 6 25 25 C 1.38229 * 119.99812 * 0.44409 * 24 23 22 26 26 C 1.38242 * 120.00395 * 359.81331 * 25 24 23 27 27 C 1.38236 * 120.00150 * 260.00370 * 22 6 5 28 28 C 1.38234 * 120.00244 * 0.07174 * 5 4 3 29 29 C 1.38230 * 119.99864 * 359.95693 * 28 5 4 30 30 H 1.09000 * 109.47344 * 269.72897 * 1 2 3 31 31 H 1.09003 * 109.46871 * 29.72827 * 1 2 3 32 32 H 1.09001 * 109.47017 * 149.72165 * 1 2 3 33 33 H 1.08001 * 120.00279 * 0.27436 * 3 2 1 34 34 H 1.07997 * 119.99831 * 179.97438 * 4 3 2 35 35 H 1.00901 * 110.99662 * 31.04438 * 8 6 5 36 36 H 1.08995 * 109.47499 * 299.99996 * 9 8 6 37 37 H 1.08998 * 109.47343 * 60.00470 * 9 8 6 38 38 H 0.97002 * 120.00047 * 359.97438 * 12 10 9 39 39 H 1.09000 * 109.47117 * 299.99137 * 13 12 10 40 40 H 1.09001 * 109.47551 * 59.99734 * 13 12 10 41 41 H 0.97003 * 119.99216 * 180.02562 * 17 16 14 42 42 H 1.07996 * 119.99841 * 0.02562 * 23 22 6 43 43 H 1.07995 * 120.00005 * 180.27344 * 24 23 22 44 44 H 1.07999 * 119.99899 * 179.83125 * 25 24 23 45 45 H 1.07998 * 120.00064 * 180.02562 * 26 25 24 46 46 H 1.08005 * 120.00156 * 359.97438 * 27 22 6 47 47 H 1.08002 * 119.99744 * 179.97438 * 28 5 4 48 48 H 1.08000 * 120.00356 * 179.97438 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0068 5 6 4.2717 0.0000 -0.0119 6 6 5.7787 0.0001 -0.0187 7 1 6.1436 -0.9663 0.3291 8 7 6.2723 1.0592 0.8716 9 6 7.6218 0.7484 1.3617 10 6 8.0934 1.8544 2.2702 11 8 7.3758 2.8075 2.4883 12 7 9.3127 1.7845 2.8403 13 6 9.7709 2.8594 3.7239 14 6 11.1554 2.5406 4.2265 15 1 11.6451 1.6288 3.9183 16 6 11.7973 3.4136 5.0792 17 7 11.2010 4.5243 5.4542 18 14 13.5137 3.0188 5.7016 19 1 14.5209 3.5821 4.7670 20 1 13.7008 3.6147 7.0489 21 1 13.6838 1.5459 5.7839 22 6 6.2748 0.2499 -1.4195 23 6 6.3016 1.5365 -1.9242 24 6 6.7608 1.7661 -3.2078 25 6 7.1845 0.7080 -3.9898 26 6 7.1528 -0.5794 -3.4870 27 6 6.6977 -0.8084 -2.2020 28 6 3.5805 -1.1971 -0.0118 29 6 2.1982 -1.1971 -0.0057 30 1 -0.3634 -0.0049 1.0276 31 1 -0.3633 0.8924 -0.5096 32 1 -0.3633 -0.8875 -0.5182 33 1 1.6582 2.1325 0.0045 34 1 4.1205 2.1325 -0.0072 35 1 5.6354 1.2124 1.6390 36 1 7.6004 -0.1909 1.9142 37 1 8.3034 0.6570 0.5160 38 1 9.8866 1.0220 2.6661 39 1 9.7918 3.7992 3.1721 40 1 9.0895 2.9497 4.5698 41 1 11.6528 5.1386 6.0537 42 1 5.9674 2.3628 -1.3144 43 1 6.7858 2.7718 -3.6005 44 1 7.5407 0.8870 -4.9935 45 1 7.4842 -1.4060 -4.0979 46 1 6.6730 -1.8142 -1.8091 47 1 4.1206 -2.1324 -0.0162 48 1 1.6582 -2.1324 -0.0060 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027356309.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:42 Heat of formation + Delta-G solvation = 6.272848 kcal Electronic energy + Delta-G solvation = -27861.010547 eV Core-core repulsion = 24072.940697 eV Total energy + Delta-G solvation = -3788.069849 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.26773 -38.92019 -38.69770 -36.14902 -34.14502 -32.89375 -32.29243 -31.26384 -31.10890 -30.77742 -28.57324 -27.40027 -25.64550 -24.22968 -22.99490 -22.30150 -22.26790 -21.57325 -20.30704 -19.67277 -17.53028 -17.00377 -16.38316 -16.01932 -15.66649 -15.51240 -15.09934 -15.04298 -14.96708 -14.73972 -14.39612 -14.04620 -13.75242 -13.66169 -13.60432 -13.36871 -13.22331 -12.85779 -12.74323 -12.44891 -12.38572 -12.16648 -12.04649 -11.91930 -11.48428 -11.37394 -11.09044 -11.08330 -10.97365 -10.89751 -10.87103 -10.31380 -9.39134 -9.07138 -9.04407 -8.91458 -8.85644 -8.72818 -8.56635 -8.46900 -7.85596 -6.16172 -4.22960 1.07398 1.28647 1.38813 1.43697 3.24396 3.30365 3.32704 3.40122 3.55448 3.75945 3.79503 4.28658 4.45874 4.60029 4.66031 4.78433 4.80754 4.90045 4.91830 4.97858 5.07639 5.14790 5.19857 5.24208 5.33843 5.34178 5.42326 5.48723 5.52887 5.55683 5.60225 5.63693 5.65768 5.87235 5.94271 5.97934 6.06006 6.25369 6.41378 6.42379 6.45198 6.53175 6.56599 6.86315 6.95042 7.00648 7.31543 7.36138 7.46063 7.53279 7.68095 7.97999 8.64609 8.79450 9.12743 9.43709 10.94037 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.011805 B = 0.002434 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.346943 B =11499.835467 C =12995.024450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.088 4.088 3 C -0.121 4.121 4 C -0.089 4.089 5 C -0.090 4.090 6 C 0.169 3.831 7 H 0.060 0.940 8 N -0.661 5.661 9 C 0.041 3.959 10 C 0.498 3.502 11 O -0.544 6.544 12 N -0.714 5.714 13 C 0.251 3.749 14 C -0.543 4.543 15 H 0.063 0.937 16 C 0.063 3.937 17 N -0.885 5.885 18 Si 0.904 3.096 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.273 1.273 22 C -0.071 4.071 23 C -0.080 4.080 24 C -0.126 4.126 25 C -0.123 4.123 26 C -0.126 4.126 27 C -0.117 4.117 28 C -0.106 4.106 29 C -0.124 4.124 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.122 0.878 34 H 0.134 0.866 35 H 0.356 0.644 36 H 0.055 0.945 37 H 0.097 0.903 38 H 0.390 0.610 39 H 0.027 0.973 40 H 0.026 0.974 41 H 0.266 0.734 42 H 0.132 0.868 43 H 0.120 0.880 44 H 0.117 0.883 45 H 0.118 0.882 46 H 0.116 0.884 47 H 0.119 0.881 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.973 -13.577 -16.884 27.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.088 4.088 3 C -0.140 4.140 4 C -0.108 4.108 5 C -0.091 4.091 6 C 0.059 3.941 7 H 0.078 0.922 8 N -0.294 5.294 9 C -0.092 4.092 10 C 0.282 3.718 11 O -0.422 6.422 12 N -0.363 5.363 13 C 0.131 3.869 14 C -0.581 4.581 15 H 0.081 0.919 16 C -0.141 4.141 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.198 1.198 22 C -0.072 4.072 23 C -0.098 4.098 24 C -0.144 4.144 25 C -0.141 4.141 26 C -0.144 4.144 27 C -0.135 4.135 28 C -0.125 4.125 29 C -0.142 4.142 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.140 0.860 34 H 0.152 0.848 35 H 0.177 0.823 36 H 0.073 0.927 37 H 0.115 0.885 38 H 0.222 0.778 39 H 0.045 0.955 40 H 0.044 0.956 41 H 0.075 0.925 42 H 0.149 0.851 43 H 0.138 0.862 44 H 0.135 0.865 45 H 0.136 0.864 46 H 0.135 0.865 47 H 0.137 0.863 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.225 -12.293 -17.069 27.187 hybrid contribution 1.203 -1.225 0.892 1.935 sum -16.022 -13.517 -16.176 26.478 Atomic orbital electron populations 1.20792 0.91387 1.02628 1.02293 1.19943 0.95991 0.93317 0.99539 1.21074 0.94249 0.97512 1.01116 1.21135 0.93838 0.98339 0.97452 1.19731 0.94019 0.93644 1.01668 1.19258 0.90032 0.93799 0.91003 0.92204 1.60151 1.03090 1.42588 1.23578 1.21886 0.92178 0.96425 0.98705 1.20295 0.82644 0.87625 0.81222 1.90660 1.55221 1.34037 1.62233 1.46441 1.15998 1.25689 1.48222 1.19081 0.94265 0.85209 0.88394 1.21232 1.00444 1.06957 1.29498 0.91931 1.24959 0.98458 0.94770 0.95876 1.69980 1.37864 1.10488 1.33938 0.86416 0.83727 0.78551 0.78221 1.20447 1.21008 1.19774 1.19679 0.99116 0.93696 0.94676 1.21091 0.97161 0.96983 0.94569 1.21211 0.99571 0.98952 0.94661 1.21128 1.00245 0.93018 0.99720 1.21023 1.00777 0.96912 0.95727 1.20965 0.99705 0.98326 0.94507 1.20961 0.94217 0.97272 1.00051 1.20932 0.93959 0.97452 1.01842 0.91200 0.91576 0.91714 0.86032 0.84813 0.82255 0.92706 0.88533 0.77809 0.95548 0.95623 0.92459 0.85052 0.86243 0.86508 0.86422 0.86548 0.86260 0.86255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.01 36.01 0.36 -0.42 16 2 C -0.09 -0.82 5.88 -104.62 -0.62 -1.44 16 3 C -0.12 -1.23 9.70 -39.58 -0.38 -1.62 16 4 C -0.09 -1.00 8.79 -39.58 -0.35 -1.35 16 5 C -0.09 -0.98 4.70 -104.62 -0.49 -1.47 16 6 C 0.17 1.88 2.42 -70.02 -0.17 1.71 16 7 H 0.06 0.61 7.52 -51.93 -0.39 0.22 16 8 N -0.66 -8.85 4.57 -110.46 -0.51 -9.35 16 9 C 0.04 0.57 5.96 -4.97 -0.03 0.55 16 10 C 0.50 9.82 7.87 -10.98 -0.09 9.74 16 11 O -0.54 -12.91 16.20 5.56 0.09 -12.82 16 12 N -0.71 -15.01 5.55 -61.47 -0.34 -15.35 16 13 C 0.25 6.69 5.43 -5.19 -0.03 6.66 16 14 C -0.54 -14.79 9.28 -34.43 -0.32 -15.11 16 15 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 18 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 C -0.07 -0.82 4.70 -104.63 -0.49 -1.31 16 23 C -0.08 -0.98 9.11 -39.58 -0.36 -1.34 16 24 C -0.13 -1.41 10.05 -39.58 -0.40 -1.81 16 25 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 26 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 27 C -0.12 -1.21 9.67 -39.58 -0.38 -1.59 16 28 C -0.11 -1.04 9.67 -39.59 -0.38 -1.42 16 29 C -0.12 -1.14 9.70 -39.59 -0.38 -1.52 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 32 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 33 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 34 H 0.13 1.57 7.24 -52.49 -0.38 1.19 16 35 H 0.36 5.06 7.69 -39.29 -0.30 4.76 16 36 H 0.06 0.67 8.05 -51.93 -0.42 0.25 16 37 H 0.10 1.30 8.00 -51.93 -0.42 0.88 16 38 H 0.39 7.01 8.32 -40.82 -0.34 6.67 16 39 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.13 1.72 7.25 -52.49 -0.38 1.34 16 43 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 45 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 46 H 0.12 0.99 8.04 -52.48 -0.42 0.57 16 47 H 0.12 0.95 8.04 -52.49 -0.42 0.53 16 48 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 LS Contribution 405.89 15.07 6.12 6.12 Total: -1.00 -32.60 405.89 -11.55 -44.15 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -7.23 Total: 10.21 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -5.40 Total: -13.39 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: -0.11 Total: -50.18 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.09 Total: -12.82 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.60 -11.55 -44.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027356309.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.423 kcal (2) G-P(sol) polarization free energy of solvation -32.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds