Wall clock time and date at job start Tue Mar 31 2020 07:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35902 * 116.99562 * 2 1 4 4 C 1.38735 * 120.05793 * 179.97438 * 3 2 1 5 5 C 1.38141 * 119.94642 * 180.02562 * 4 3 2 6 6 C 1.38264 * 120.05456 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94302 * 180.02562 * 6 5 4 8 8 N 1.46894 * 109.47261 * 93.63181 * 7 6 5 9 9 C 1.46901 * 110.99967 * 155.92452 * 8 7 6 10 10 C 1.50709 * 109.46889 * 198.97024 * 9 8 7 11 11 H 1.08001 * 119.99564 * 4.37542 * 10 9 8 12 12 C 1.37882 * 119.99909 * 184.37088 * 10 9 8 13 13 N 1.31508 * 119.99822 * 0.02562 * 12 10 9 14 14 Si 1.86791 * 119.99602 * 180.02562 * 12 10 9 15 15 H 1.48491 * 109.47740 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.47237 * 120.00359 * 14 12 10 17 17 H 1.48511 * 109.46940 * 239.99866 * 14 12 10 18 18 C 1.46900 * 110.99980 * 279.87489 * 8 7 6 19 19 H 1.09005 * 110.01001 * 50.03966 * 18 8 7 20 20 C 1.53875 * 110.03031 * 288.65999 * 18 8 7 21 21 C 1.54162 * 108.70713 * 193.47781 * 20 18 8 22 22 S 1.82915 * 105.08328 * 27.91034 * 21 20 18 23 23 O 1.42095 * 109.35645 * 111.27641 * 22 21 20 24 24 O 1.42104 * 109.35341 * 244.34399 * 22 21 20 25 25 C 1.55409 * 110.08481 * 171.28846 * 18 8 7 26 26 C 1.38272 * 120.11395 * 0.29341 * 6 5 4 27 27 C 1.38142 * 120.05217 * 359.45265 * 26 6 5 28 28 H 1.08998 * 109.47108 * 60.00572 * 1 2 3 29 29 H 1.09009 * 109.46358 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47370 * 299.99273 * 1 2 3 31 31 H 1.08001 * 120.02553 * 0.02562 * 4 3 2 32 32 H 1.07996 * 119.97265 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.47348 * 333.62427 * 7 6 5 34 34 H 1.09011 * 109.47206 * 213.63367 * 7 6 5 35 35 H 1.09001 * 109.47487 * 318.96475 * 9 8 7 36 36 H 1.08991 * 109.47478 * 78.97220 * 9 8 7 37 37 H 0.97002 * 119.99758 * 180.02562 * 13 12 10 38 38 H 1.09004 * 109.64567 * 73.62498 * 20 18 8 39 39 H 1.08999 * 109.64543 * 313.33353 * 20 18 8 40 40 H 1.08998 * 110.32038 * 269.00428 * 21 20 18 41 41 H 1.09002 * 110.40131 * 146.85426 * 21 20 18 42 42 H 1.08999 * 110.75546 * 43.47524 * 25 18 8 43 43 H 1.08994 * 110.95594 * 279.91337 * 25 18 8 44 44 H 1.07993 * 119.96976 * 179.70738 * 26 6 5 45 45 H 1.07997 * 120.02554 * 180.25675 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2851 0.0005 5 6 4.0559 2.5172 0.0011 6 6 3.3016 3.6759 0.0005 7 6 3.9857 5.0187 0.0005 8 7 4.1304 5.4946 -1.3816 9 6 4.2439 6.9586 -1.4252 10 6 3.9255 7.4460 -2.8153 11 1 3.5963 6.7473 -3.5702 12 6 4.0542 8.7838 -3.1231 13 7 4.4553 9.6344 -2.2039 14 14 3.6587 9.3879 -4.8459 15 1 3.2313 8.2410 -5.6868 16 1 2.5632 10.3884 -4.7804 17 1 4.8667 10.0149 -5.4400 18 6 5.2787 4.8577 -2.0402 19 1 5.2331 3.7769 -1.9065 20 6 6.5922 5.4061 -1.4557 21 6 7.7556 4.9887 -2.3771 22 16 7.0109 4.8251 -4.0398 23 8 7.5020 5.8606 -4.8798 24 8 7.0955 3.4710 -4.4625 25 6 5.2841 5.2034 -3.5554 26 6 1.9208 3.6049 0.0056 27 6 1.2913 2.3752 -0.0002 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0278 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 4.0209 0.3802 0.0005 32 1 5.1343 2.5754 0.0019 33 1 4.9708 4.9247 0.4575 34 1 3.3880 5.7311 0.5694 35 1 3.5426 7.3987 -0.7164 36 1 5.2598 7.2522 -1.1612 37 1 4.5455 10.5756 -2.4204 38 1 6.7492 4.9953 -0.4583 39 1 6.5421 6.4934 -1.3984 40 1 8.1716 4.0348 -2.0531 41 1 8.5298 5.7560 -2.3830 42 1 5.0609 6.2588 -3.7116 43 1 4.5822 4.5733 -4.1015 44 1 1.3339 4.5114 0.0099 45 1 0.2127 2.3202 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027648802.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:18 Heat of formation + Delta-G solvation = -56.142724 kcal Electronic energy + Delta-G solvation = -28215.409795 eV Core-core repulsion = 24326.525598 eV Total energy + Delta-G solvation = -3888.884197 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.11643 -38.68590 -37.15442 -36.53828 -35.53819 -33.44687 -32.86121 -31.01503 -30.60707 -29.08523 -27.79235 -27.10950 -24.77624 -23.80996 -22.65200 -22.35793 -21.04955 -19.25827 -18.43348 -18.10002 -17.02452 -16.42357 -16.21436 -15.81469 -15.77182 -15.42616 -15.17065 -14.72179 -14.59635 -14.24198 -14.21060 -13.92502 -13.63780 -13.32388 -13.19228 -12.69822 -12.50489 -12.15216 -12.10101 -11.88989 -11.72078 -11.60731 -11.53295 -11.45946 -11.25692 -11.23572 -11.02294 -10.79617 -10.73126 -10.66143 -10.48208 -10.30732 -9.83472 -9.61549 -9.18607 -8.87170 -8.55332 -7.99770 -7.46138 -6.23421 -4.23119 0.55637 1.45984 1.55562 3.00019 3.24344 3.24487 3.34421 3.36365 3.84923 4.04187 4.29335 4.42393 4.71243 4.82162 4.93064 4.94086 5.00998 5.03554 5.05825 5.08677 5.09337 5.23547 5.29059 5.31167 5.43997 5.50452 5.52264 5.66850 5.80918 5.81785 5.91348 6.08276 6.12619 6.17638 6.33353 6.37952 6.48187 6.79280 6.85495 6.90761 7.00280 7.17598 7.41547 7.60502 7.86208 7.92343 8.29888 8.81883 9.38482 10.85316 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010629 B = 0.004064 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.568341 B = 6888.208867 C = 8315.794095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.115 3.885 4 C -0.152 4.152 5 C -0.080 4.080 6 C -0.097 4.097 7 C 0.087 3.913 8 N -0.509 5.509 9 C 0.176 3.824 10 C -0.520 4.520 11 H 0.081 0.919 12 C 0.062 3.938 13 N -0.886 5.886 14 Si 0.887 3.113 15 H -0.267 1.267 16 H -0.282 1.282 17 H -0.279 1.279 18 C 0.102 3.898 19 H 0.085 0.915 20 C -0.159 4.159 21 C -0.586 4.586 22 S 2.360 3.640 23 O -0.946 6.946 24 O -0.960 6.960 25 C -0.589 4.589 26 C -0.057 4.057 27 C -0.207 4.207 28 H 0.055 0.945 29 H 0.096 0.904 30 H 0.053 0.947 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.041 0.959 34 H 0.081 0.919 35 H 0.032 0.968 36 H 0.015 0.985 37 H 0.265 0.735 38 H 0.079 0.921 39 H 0.109 0.891 40 H 0.125 0.875 41 H 0.130 0.870 42 H 0.207 0.793 43 H 0.129 0.871 44 H 0.127 0.873 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.367 -13.301 6.933 15.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.236 6.236 3 C 0.070 3.930 4 C -0.171 4.171 5 C -0.099 4.099 6 C -0.098 4.098 7 C -0.041 4.041 8 N -0.232 5.232 9 C 0.052 3.948 10 C -0.558 4.558 11 H 0.099 0.901 12 C -0.142 4.142 13 N -0.523 5.523 14 Si 0.714 3.286 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.204 1.204 18 C -0.009 4.009 19 H 0.103 0.897 20 C -0.199 4.199 21 C -0.716 4.716 22 S 2.546 3.454 23 O -0.943 6.943 24 O -0.957 6.957 25 C -0.721 4.721 26 C -0.076 4.076 27 C -0.226 4.226 28 H 0.073 0.927 29 H 0.114 0.886 30 H 0.072 0.928 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.059 0.941 34 H 0.099 0.901 35 H 0.050 0.950 36 H 0.033 0.967 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.127 0.873 40 H 0.143 0.857 41 H 0.149 0.851 42 H 0.223 0.777 43 H 0.147 0.853 44 H 0.145 0.855 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.231 -13.650 5.814 15.004 hybrid contribution -0.028 0.928 0.318 0.982 sum -2.260 -12.722 6.132 14.302 Atomic orbital electron populations 1.23003 0.78741 1.03537 1.01359 1.86037 1.21123 1.27326 1.89115 1.18997 0.92361 0.83947 0.97701 1.20331 0.91293 0.98447 1.07032 1.20874 0.99595 0.91186 0.98230 1.19860 0.93672 0.95041 1.01214 1.21088 0.98546 0.92957 0.91475 1.62293 1.37481 1.10272 1.13148 1.20089 0.96815 0.79613 0.98276 1.21302 1.45295 0.92642 0.96566 0.90084 1.25024 0.94832 0.96801 0.97505 1.69933 1.45625 1.03428 1.33359 0.86595 0.78410 0.79390 0.84254 1.19168 1.20786 1.20445 1.22138 0.88921 0.98590 0.91294 0.89736 1.22771 0.91965 1.05725 0.99412 1.30334 1.08949 1.10121 1.22216 1.09801 0.81750 0.75161 0.78643 1.93583 1.79188 1.57822 1.63691 1.93546 1.86623 1.34938 1.80599 1.31722 1.17763 1.18806 1.03790 1.20846 0.94160 0.96863 0.95735 1.21200 0.99731 0.92433 1.09256 0.92666 0.88586 0.92817 0.85624 0.85764 0.94058 0.90081 0.95034 0.96747 0.92559 0.90197 0.87316 0.85665 0.85136 0.77727 0.85284 0.85546 0.85857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.90 10.50 -19.43 -0.20 -4.11 16 3 C 0.11 1.50 6.69 -39.21 -0.26 1.24 16 4 C -0.15 -1.96 9.99 -39.43 -0.39 -2.36 16 5 C -0.08 -1.04 8.53 -39.61 -0.34 -1.38 16 6 C -0.10 -1.37 5.19 -104.60 -0.54 -1.91 16 7 C 0.09 1.31 5.06 -4.98 -0.03 1.29 16 8 N -0.51 -9.09 4.40 -227.44 -1.00 -10.09 16 9 C 0.18 3.83 4.53 -4.97 -0.02 3.81 16 10 C -0.52 -12.58 6.56 -34.43 -0.23 -12.81 16 11 H 0.08 1.94 5.97 -52.49 -0.31 1.62 16 12 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 13 N -0.89 -23.74 13.29 55.43 0.74 -23.01 16 14 Si 0.89 20.25 29.54 -169.99 -5.02 15.23 16 15 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 C 0.10 1.64 2.53 -65.98 -0.17 1.48 16 19 H 0.08 1.23 6.45 -51.93 -0.33 0.89 16 20 C -0.16 -2.32 5.14 -25.67 -0.13 -2.46 16 21 C -0.59 -7.74 7.26 37.76 0.27 -7.46 16 22 S 2.36 38.85 6.09 -107.50 -0.66 38.20 16 23 O -0.95 -19.12 18.14 -57.73 -1.05 -20.17 16 24 O -0.96 -17.66 18.15 -57.73 -1.05 -18.71 16 25 C -0.59 -10.22 5.90 38.44 0.23 -9.99 16 26 C -0.06 -0.79 9.71 -39.60 -0.38 -1.17 16 27 C -0.21 -2.61 9.04 -39.43 -0.36 -2.97 16 28 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 29 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 30 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 31 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.12 1.39 7.83 -52.49 -0.41 0.97 16 33 H 0.04 0.56 6.41 -51.93 -0.33 0.23 16 34 H 0.08 1.23 7.49 -51.92 -0.39 0.84 16 35 H 0.03 0.74 7.57 -51.93 -0.39 0.35 16 36 H 0.02 0.33 5.20 -51.93 -0.27 0.06 16 37 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 38 H 0.08 0.99 7.07 -51.93 -0.37 0.63 16 39 H 0.11 1.84 5.41 -51.93 -0.28 1.56 16 40 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.13 1.59 8.14 -51.93 -0.42 1.17 16 42 H 0.21 4.16 3.80 -51.93 -0.20 3.97 16 43 H 0.13 2.07 8.14 -51.93 -0.42 1.64 16 44 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 45 H 0.12 1.28 6.30 -52.49 -0.33 0.95 16 LS Contribution 364.63 15.07 5.49 5.49 Total: -1.00 -31.83 364.63 -10.29 -42.11 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -6.09 Total: 7.02 kcal Atomic # 6 Polarization: -30.51 SS G_CDS: -1.45 Total: -31.97 kcal Atomic # 7 Polarization: -32.84 SS G_CDS: -0.26 Total: -33.10 kcal Atomic # 8 Polarization: -40.69 SS G_CDS: -2.30 Total: -42.99 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: 38.85 SS G_CDS: -0.66 Total: 38.20 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.83 -10.29 -42.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027648802.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.032 kcal (2) G-P(sol) polarization free energy of solvation -31.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds