Wall clock time and date at job start Tue Mar 31 2020 07:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35901 * 117.00153 * 2 1 4 4 C 1.38732 * 120.05838 * 180.02562 * 3 2 1 5 5 C 1.38147 * 119.94035 * 179.97438 * 4 3 2 6 6 C 1.38259 * 120.05851 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.94240 * 180.02562 * 6 5 4 8 8 N 1.46902 * 109.47360 * 95.60846 * 7 6 5 9 9 C 1.46900 * 111.00062 * 164.15033 * 8 7 6 10 10 C 1.50699 * 109.46689 * 207.19254 * 9 8 7 11 11 H 1.08006 * 120.00426 * 359.22552 * 10 9 8 12 12 C 1.37883 * 119.99861 * 179.22156 * 10 9 8 13 13 N 1.31508 * 119.99763 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99858 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47001 * 90.00420 * 14 12 10 16 16 H 1.48503 * 109.47357 * 210.00116 * 14 12 10 17 17 H 1.48498 * 109.47630 * 330.00250 * 14 12 10 18 18 C 1.46898 * 110.99720 * 288.10340 * 8 7 6 19 19 H 1.09002 * 109.64421 * 60.29820 * 18 8 7 20 20 C 1.53878 * 109.64751 * 180.59339 * 18 8 7 21 21 C 1.55043 * 106.62806 * 167.02995 * 20 18 8 22 22 S 1.83285 * 102.56633 * 317.56827 * 21 20 18 23 23 O 1.42105 * 109.35259 * 269.81123 * 22 21 20 24 24 O 1.42101 * 109.35725 * 136.60775 * 22 21 20 25 25 C 1.54162 * 109.64641 * 299.86546 * 18 8 7 26 26 C 1.38259 * 120.11220 * 0.27481 * 6 5 4 27 27 C 1.38142 * 120.05574 * 359.45016 * 26 6 5 28 28 H 1.09001 * 109.46881 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47138 * 299.99705 * 1 2 3 30 30 H 1.09002 * 109.46823 * 60.00207 * 1 2 3 31 31 H 1.08000 * 120.02526 * 359.95907 * 4 3 2 32 32 H 1.08009 * 119.96852 * 180.02562 * 5 4 3 33 33 H 1.08996 * 109.47444 * 335.60779 * 7 6 5 34 34 H 1.08999 * 109.47177 * 215.60572 * 7 6 5 35 35 H 1.08993 * 109.47145 * 327.18705 * 9 8 7 36 36 H 1.08994 * 109.47318 * 87.19520 * 9 8 7 37 37 H 0.97005 * 120.00077 * 179.97438 * 13 12 10 38 38 H 1.08998 * 110.02791 * 286.32664 * 20 18 8 39 39 H 1.09000 * 110.02491 * 47.74081 * 20 18 8 40 40 H 1.08992 * 110.79561 * 199.29515 * 21 20 18 41 41 H 1.09005 * 110.78709 * 75.83227 * 21 20 18 42 42 H 1.08996 * 110.32207 * 331.14590 * 25 18 8 43 43 H 1.09007 * 110.32062 * 93.23773 * 25 18 8 44 44 H 1.08011 * 119.97250 * 179.70533 * 26 6 5 45 45 H 1.08003 * 120.03174 * 180.27693 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2849 -0.0005 5 6 4.0560 2.5170 -0.0011 6 6 3.3019 3.6758 -0.0016 7 6 3.9860 5.0185 -0.0028 8 7 4.0872 5.5154 -1.3815 9 6 4.3945 6.9517 -1.4023 10 6 3.8565 7.5622 -2.6707 11 1 3.3491 6.9425 -3.3953 12 6 4.0119 8.9118 -2.9061 13 7 4.6301 9.6662 -2.0240 14 14 3.3456 9.6683 -4.4787 15 1 1.9486 10.1208 -4.2571 16 1 4.1867 10.8298 -4.8644 17 1 3.3716 8.6560 -5.5649 18 6 5.0846 4.7526 -2.1440 19 1 4.7952 3.7022 -2.1777 20 6 5.1759 5.3074 -3.5764 21 6 6.4526 4.6956 -4.2086 22 16 7.6717 4.8210 -2.8458 23 8 8.3527 6.0649 -2.9361 24 8 8.4119 3.6108 -2.7632 25 6 6.4655 4.8885 -1.4723 26 6 1.9211 3.6048 0.0041 27 6 1.2915 2.3751 -0.0011 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 4.0209 0.3799 -0.0003 32 1 5.1346 2.5751 -0.0019 33 1 4.9850 4.9177 0.4213 34 1 3.4067 5.7220 0.5952 35 1 3.9316 7.4348 -0.5418 36 1 5.4745 7.0929 -1.3608 37 1 4.7397 10.6157 -2.1898 38 1 4.2969 5.0104 -4.1484 39 1 5.2558 6.3942 -3.5513 40 1 6.7750 5.2790 -5.0710 41 1 6.2866 3.6543 -4.4847 42 1 6.5400 5.8421 -0.9497 43 1 6.6322 4.0638 -0.7792 44 1 1.3341 4.5114 0.0085 45 1 0.2129 2.3201 -0.0011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027648808.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:22 Heat of formation + Delta-G solvation = -64.433490 kcal Electronic energy + Delta-G solvation = -28239.317314 eV Core-core repulsion = 24350.073603 eV Total energy + Delta-G solvation = -3889.243712 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.15675 -38.71423 -37.14787 -36.67858 -35.68017 -33.45697 -32.83044 -31.05454 -30.48853 -29.11350 -27.84832 -26.74760 -25.29373 -23.88652 -22.56147 -22.00427 -20.95818 -19.28187 -18.50795 -18.13515 -16.71210 -16.58401 -16.38284 -16.06713 -15.81228 -15.50301 -15.19795 -14.80757 -14.59042 -14.28211 -13.96417 -13.73864 -13.62094 -13.44531 -13.38856 -12.59563 -12.48827 -12.40334 -12.08239 -11.98889 -11.80842 -11.69712 -11.59841 -11.38225 -11.26412 -11.15641 -10.95642 -10.83277 -10.66932 -10.64942 -10.48939 -10.33067 -9.95142 -9.61208 -9.37652 -8.89934 -8.51175 -8.03058 -7.50859 -6.13683 -4.13880 0.39939 1.42951 1.52865 2.85929 3.21534 3.25864 3.33840 3.34837 3.80504 3.91703 4.28935 4.34720 4.64120 4.79754 4.89652 4.95841 4.98665 5.03145 5.06307 5.08519 5.11152 5.22425 5.27894 5.30853 5.44915 5.50131 5.51016 5.69310 5.77245 5.83287 5.92120 6.03853 6.09226 6.15628 6.35689 6.45816 6.47775 6.78680 6.83211 6.95668 7.02522 7.16106 7.38863 7.67906 7.90559 7.98268 8.33665 8.91221 9.47722 10.95687 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009757 B = 0.004249 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2869.162608 B = 6587.676416 C = 8526.609519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.115 3.885 4 C -0.153 4.153 5 C -0.081 4.081 6 C -0.098 4.098 7 C 0.089 3.911 8 N -0.511 5.511 9 C 0.179 3.821 10 C -0.511 4.511 11 H 0.071 0.929 12 C 0.058 3.942 13 N -0.890 5.890 14 Si 0.893 3.107 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.272 1.272 18 C 0.107 3.893 19 H 0.086 0.914 20 C -0.131 4.131 21 C -0.583 4.583 22 S 2.381 3.619 23 O -0.936 6.936 24 O -0.958 6.958 25 C -0.632 4.632 26 C -0.056 4.056 27 C -0.208 4.208 28 H 0.096 0.904 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.041 0.959 34 H 0.081 0.919 35 H 0.032 0.968 36 H 0.007 0.993 37 H 0.264 0.736 38 H 0.093 0.907 39 H 0.142 0.858 40 H 0.133 0.867 41 H 0.126 0.874 42 H 0.147 0.853 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.529 -15.089 3.017 16.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.236 6.236 3 C 0.070 3.930 4 C -0.172 4.172 5 C -0.100 4.100 6 C -0.099 4.099 7 C -0.039 4.039 8 N -0.233 5.233 9 C 0.055 3.945 10 C -0.549 4.549 11 H 0.089 0.911 12 C -0.145 4.145 13 N -0.528 5.528 14 Si 0.721 3.279 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.196 1.196 18 C -0.004 4.004 19 H 0.104 0.896 20 C -0.169 4.169 21 C -0.715 4.715 22 S 2.566 3.434 23 O -0.933 6.933 24 O -0.954 6.954 25 C -0.764 4.764 26 C -0.075 4.075 27 C -0.226 4.226 28 H 0.114 0.886 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.059 0.941 34 H 0.100 0.900 35 H 0.050 0.950 36 H 0.025 0.975 37 H 0.074 0.926 38 H 0.112 0.888 39 H 0.160 0.840 40 H 0.151 0.849 41 H 0.145 0.855 42 H 0.165 0.835 43 H 0.146 0.854 44 H 0.146 0.854 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.840 -15.105 2.837 15.842 hybrid contribution -0.709 0.698 -0.373 1.063 sum -4.549 -14.407 2.464 15.308 Atomic orbital electron populations 1.23004 0.78722 1.03547 1.01369 1.86037 1.21134 1.27327 1.89109 1.18999 0.92350 0.83952 0.97696 1.20336 0.91288 0.98441 1.07115 1.20905 0.99643 0.91186 0.98269 1.19866 0.93685 0.95047 1.01296 1.21103 0.98480 0.92619 0.91667 1.62289 1.44793 1.06270 1.09989 1.20008 0.95684 0.80256 0.98600 1.21183 1.36698 0.92821 1.04225 0.91076 1.25004 0.95295 0.97202 0.96953 1.69929 1.41636 1.06240 1.34994 0.86571 0.78858 0.79057 0.83431 1.20660 1.21226 1.19632 1.22064 0.85954 0.99232 0.93182 0.89613 1.22995 0.94948 1.06422 0.92574 1.30586 1.14983 1.09610 1.16272 1.09128 0.78349 0.75034 0.80907 1.93626 1.71156 1.43168 1.85360 1.93553 1.69242 1.46664 1.85990 1.31205 1.15617 1.11942 1.17626 1.20865 0.94167 0.96893 0.95573 1.21211 0.99746 0.92424 1.09267 0.88576 0.92797 0.92678 0.85602 0.85775 0.94099 0.90032 0.95012 0.97515 0.92647 0.88841 0.83999 0.84856 0.85526 0.83486 0.85359 0.85439 0.85842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.80 10.50 -19.43 -0.20 -4.00 16 3 C 0.11 1.46 6.69 -39.22 -0.26 1.20 16 4 C -0.15 -1.92 9.99 -39.43 -0.39 -2.32 16 5 C -0.08 -1.04 8.51 -39.61 -0.34 -1.38 16 6 C -0.10 -1.37 4.91 -104.61 -0.51 -1.89 16 7 C 0.09 1.38 4.95 -4.98 -0.02 1.35 16 8 N -0.51 -9.16 4.44 -228.25 -1.01 -10.17 16 9 C 0.18 3.99 4.21 -4.98 -0.02 3.97 16 10 C -0.51 -12.51 6.45 -34.44 -0.22 -12.73 16 11 H 0.07 1.70 6.81 -52.48 -0.36 1.34 16 12 C 0.06 1.51 5.46 -17.82 -0.10 1.42 16 13 N -0.89 -24.59 13.29 55.43 0.74 -23.85 16 14 Si 0.89 20.20 29.54 -169.99 -5.02 15.18 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 16 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 18 C 0.11 1.68 2.47 -66.65 -0.16 1.51 16 19 H 0.09 1.21 6.67 -51.93 -0.35 0.86 16 20 C -0.13 -2.14 4.62 -25.19 -0.12 -2.26 16 21 C -0.58 -7.80 7.31 38.24 0.28 -7.52 16 22 S 2.38 36.59 6.11 -107.50 -0.66 35.94 16 23 O -0.94 -18.39 18.15 -57.71 -1.05 -19.44 16 24 O -0.96 -16.34 18.15 -57.71 -1.05 -17.39 16 25 C -0.63 -9.23 5.10 37.76 0.19 -9.04 16 26 C -0.06 -0.76 9.71 -39.61 -0.38 -1.15 16 27 C -0.21 -2.56 9.04 -39.43 -0.36 -2.91 16 28 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.37 7.66 -51.93 -0.40 -0.02 16 30 H 0.05 0.40 7.66 -51.93 -0.40 0.01 16 31 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.12 1.40 7.49 -52.48 -0.39 1.00 16 33 H 0.04 0.59 6.47 -51.93 -0.34 0.25 16 34 H 0.08 1.29 7.61 -51.93 -0.39 0.89 16 35 H 0.03 0.77 7.51 -51.93 -0.39 0.38 16 36 H 0.01 0.17 5.75 -51.93 -0.30 -0.13 16 37 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 38 H 0.09 1.48 8.06 -51.93 -0.42 1.06 16 39 H 0.14 2.81 4.79 -51.93 -0.25 2.56 16 40 H 0.13 1.64 8.14 -51.93 -0.42 1.22 16 41 H 0.13 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.15 2.38 5.86 -51.93 -0.30 2.07 16 43 H 0.13 1.51 7.40 -51.92 -0.38 1.13 16 44 H 0.13 1.68 8.06 -52.48 -0.42 1.26 16 45 H 0.12 1.25 6.30 -52.48 -0.33 0.92 16 LS Contribution 365.59 15.07 5.51 5.51 Total: -1.00 -32.49 365.59 -10.42 -42.91 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -6.25 Total: 5.84 kcal Atomic # 6 Polarization: -29.10 SS G_CDS: -1.43 Total: -30.53 kcal Atomic # 7 Polarization: -33.74 SS G_CDS: -0.28 Total: -34.02 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -2.30 Total: -40.83 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: 36.59 SS G_CDS: -0.66 Total: 35.94 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.49 -10.42 -42.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027648808.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.525 kcal (2) G-P(sol) polarization free energy of solvation -32.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds