Wall clock time and date at job start Tue Mar 31 2020 06:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99921 * 2 1 4 4 H 1.48496 * 109.47036 * 269.99795 * 3 2 1 5 5 H 1.48499 * 109.47226 * 29.99786 * 3 2 1 6 6 H 1.48499 * 109.47235 * 149.99936 * 3 2 1 7 7 C 1.37872 * 119.99843 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99817 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00251 * 359.97438 * 7 2 1 10 10 O 1.42107 * 106.39700 * 66.46341 * 9 7 2 11 11 O 1.42096 * 106.40500 * 293.54410 * 9 7 2 12 12 C 1.76206 * 107.22050 * 179.97438 * 9 7 2 13 13 N 1.29399 * 126.06398 * 89.95798 * 12 9 7 14 14 N 1.26104 * 117.93435 * 179.78351 * 13 12 9 15 15 C 1.30191 * 117.64622 * 0.48464 * 14 13 12 16 16 N 1.38976 * 126.16328 * 179.82867 * 15 14 13 17 17 C 1.34777 * 119.99596 * 359.68946 * 16 15 14 18 18 O 1.21563 * 120.00284 * 359.97438 * 17 16 15 19 19 C 1.47804 * 119.99571 * 179.72312 * 17 16 15 20 20 C 1.39599 * 120.14442 * 359.97438 * 19 17 16 21 21 C 1.37957 * 119.84511 * 179.76566 * 20 19 17 22 22 C 1.38363 * 120.14586 * 0.50846 * 21 20 19 23 23 C 1.38360 * 120.30094 * 359.74646 * 22 21 20 24 24 C 1.37953 * 120.14710 * 359.97438 * 23 22 21 25 25 S 1.76483 * 126.07339 * 270.00445 * 12 9 7 26 26 H 0.97006 * 120.00036 * 0.02562 * 1 2 3 27 27 H 0.97000 * 119.99921 * 179.68503 * 16 15 14 28 28 H 1.07997 * 120.07552 * 359.97438 * 20 19 17 29 29 H 1.07997 * 119.92321 * 180.27619 * 21 20 19 30 30 H 1.08006 * 119.84994 * 179.71556 * 22 21 20 31 31 H 1.07999 * 119.93154 * 179.97438 * 23 22 21 32 32 H 1.07998 * 120.07716 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 16 1.1235 -2.7199 0.0019 10 8 0.4510 -2.7960 -1.2476 11 8 0.4518 -2.7944 1.2518 12 6 2.3203 -4.0132 0.0016 13 7 2.8390 -4.5713 1.0474 14 7 3.6836 -5.4906 0.8688 15 6 3.9816 -5.8072 -0.3583 16 7 4.8855 -6.7847 -0.7567 17 6 5.5524 -7.5030 0.1684 18 8 5.3636 -7.2954 1.3512 19 6 6.5092 -8.5468 -0.2552 20 6 6.7241 -8.7916 -1.6127 21 6 7.6221 -9.7641 -2.0012 22 6 8.3013 -10.5031 -1.0489 23 6 8.0891 -10.2692 0.2982 24 6 7.1981 -9.2959 0.7004 25 16 3.0251 -4.7765 -1.4251 26 1 -0.4850 0.8401 -0.0004 27 1 5.0364 -6.9501 -1.7005 28 1 6.1910 -8.2187 -2.3569 29 1 7.7926 -9.9515 -3.0511 30 1 8.9999 -11.2665 -1.3584 31 1 8.6221 -10.8499 1.0365 32 1 7.0330 -9.1145 1.7522 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027664291.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:46 Heat of formation + Delta-G solvation = -13.332031 kcal Electronic energy + Delta-G solvation = -22990.301306 eV Core-core repulsion = 19170.819858 eV Total energy + Delta-G solvation = -3819.481447 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 339.018 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.26322 -40.32866 -38.72458 -35.62523 -35.42617 -34.21306 -33.23341 -32.07426 -31.46421 -30.31267 -26.66919 -26.27077 -24.54277 -23.10258 -22.33716 -20.31627 -20.01336 -18.83496 -18.20343 -17.85974 -16.78096 -16.56817 -16.12963 -15.83537 -15.63207 -15.07827 -14.90401 -14.74677 -14.29656 -13.98577 -13.96818 -13.84390 -13.32760 -13.14561 -12.20423 -12.15093 -11.68167 -11.64904 -11.44061 -11.26793 -11.17407 -10.65130 -10.58192 -10.54558 -10.44831 -10.05058 -9.85405 -9.67228 -9.55833 -9.50859 -9.35066 -9.05225 -8.85152 -6.84143 -5.48867 0.06888 0.46927 0.54927 0.82985 1.17127 1.75054 2.31307 2.42252 2.79748 3.03501 3.10272 3.18059 3.37384 3.90348 3.98693 4.23853 4.38861 4.51837 4.54045 4.78345 4.81800 4.91366 4.95981 5.07318 5.22217 5.44262 5.57245 5.64913 5.76037 5.84179 5.91533 6.32168 6.55767 6.63063 7.18646 7.55783 7.79982 8.68419 8.72815 10.11468 Molecular weight = 339.02amu Principal moments of inertia in cm(-1) A = 0.026643 B = 0.002573 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.694654 B =10879.087804 C =10990.461891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.133 3.867 3 Si 0.930 3.070 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.260 1.260 7 C -0.989 4.989 8 H 0.109 0.891 9 S 2.611 3.389 10 O -0.961 6.961 11 O -0.945 6.945 12 C -0.501 4.501 13 N -0.134 5.134 14 N -0.274 5.274 15 C 0.247 3.753 16 N -0.622 5.622 17 C 0.552 3.448 18 O -0.457 6.457 19 C -0.131 4.131 20 C -0.087 4.087 21 C -0.125 4.125 22 C -0.091 4.091 23 C -0.125 4.125 24 C -0.054 4.054 25 S 0.167 5.833 26 H 0.295 0.705 27 H 0.424 0.576 28 H 0.127 0.873 29 H 0.132 0.868 30 H 0.129 0.871 31 H 0.133 0.867 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.365 -17.527 -8.141 25.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.086 4.086 3 Si 0.753 3.247 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.184 1.184 7 C -1.124 5.124 8 H 0.127 0.873 9 S 2.782 3.218 10 O -0.958 6.958 11 O -0.942 6.942 12 C -0.855 4.855 13 N 0.028 4.972 14 N -0.121 5.121 15 C -0.121 4.121 16 N -0.274 5.274 17 C 0.337 3.663 18 O -0.325 6.325 19 C -0.135 4.135 20 C -0.106 4.106 21 C -0.143 4.143 22 C -0.109 4.109 23 C -0.143 4.143 24 C -0.073 4.073 25 S 0.405 5.595 26 H 0.106 0.894 27 H 0.264 0.736 28 H 0.144 0.856 29 H 0.150 0.850 30 H 0.147 0.853 31 H 0.151 0.849 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 15.314 -17.693 -6.971 24.417 hybrid contribution 1.333 0.645 -0.650 1.618 sum 16.647 -17.048 -7.621 25.017 Atomic orbital electron populations 1.69880 1.06739 1.31290 1.38908 1.24789 0.94677 1.00808 0.88341 0.86000 0.80187 0.79157 0.79343 1.18937 1.19641 1.18379 1.29872 1.05992 1.08621 1.67952 0.87322 1.01825 0.72369 0.73481 0.74106 1.93406 1.70431 1.87149 1.44783 1.93397 1.70222 1.86436 1.44107 1.43679 1.23967 1.24369 0.93512 1.71118 1.00808 1.00090 1.25215 1.71767 1.13063 1.12086 1.15193 1.27396 0.95882 0.95275 0.93537 1.42837 1.39264 1.33753 1.11594 1.18654 0.80599 0.81285 0.85756 1.90969 1.61192 1.64417 1.15879 1.19701 1.00340 0.98900 0.94534 1.21332 0.97482 0.97478 0.94259 1.21134 0.96801 0.96162 1.00224 1.21461 0.98022 0.98291 0.93114 1.21220 0.98570 0.98174 0.96381 1.21356 0.92971 0.92751 1.00195 1.85591 1.34814 1.29853 1.09282 0.89408 0.73613 0.85550 0.84997 0.85264 0.84901 0.84173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.59 13.19 55.43 0.73 -22.86 16 2 C 0.13 3.57 5.46 -17.82 -0.10 3.47 16 3 Si 0.93 19.88 29.54 -169.99 -5.02 14.86 16 4 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.99 -26.57 9.58 30.60 0.29 -26.28 16 8 H 0.11 2.67 7.81 -52.48 -0.41 2.26 16 9 S 2.61 69.56 4.83 -107.50 -0.52 69.04 16 10 O -0.96 -26.40 17.84 -57.17 -1.02 -27.42 16 11 O -0.94 -27.94 17.90 -57.17 -1.02 -28.96 16 12 C -0.50 -11.36 7.65 51.74 0.40 -10.97 16 13 N -0.13 -3.15 11.56 31.17 0.36 -2.79 16 14 N -0.27 -5.86 9.80 31.05 0.30 -5.55 16 15 C 0.25 4.16 8.42 -86.91 -0.73 3.43 16 16 N -0.62 -7.46 5.35 -12.48 -0.07 -7.52 16 17 C 0.55 7.25 7.73 -12.35 -0.10 7.15 16 18 O -0.46 -8.09 15.06 5.31 0.08 -8.01 16 19 C -0.13 -1.23 5.87 -104.97 -0.62 -1.85 16 20 C -0.09 -0.55 9.54 -39.18 -0.37 -0.93 16 21 C -0.13 -0.65 10.03 -39.64 -0.40 -1.04 16 22 C -0.09 -0.46 10.04 -39.49 -0.40 -0.86 16 23 C -0.13 -0.78 10.03 -39.64 -0.40 -1.18 16 24 C -0.05 -0.47 9.60 -39.18 -0.38 -0.85 16 25 S 0.17 2.82 23.47 -107.50 -2.52 0.29 16 26 H 0.30 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.42 3.01 6.85 -40.82 -0.28 2.73 16 28 H 0.13 0.47 6.40 -52.49 -0.34 0.13 16 29 H 0.13 0.37 8.06 -52.49 -0.42 -0.06 16 30 H 0.13 0.35 8.06 -52.48 -0.42 -0.07 16 31 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 32 H 0.14 1.29 7.65 -52.49 -0.40 0.88 16 LS Contribution 325.02 15.07 4.90 4.90 Total: -1.00 -37.61 325.02 -8.42 -46.03 By element: Atomic # 1 Polarization: -0.28 SS G_CDS: -1.83 Total: -2.11 kcal Atomic # 6 Polarization: -27.10 SS G_CDS: -2.79 Total: -29.89 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 1.33 Total: -38.73 kcal Atomic # 8 Polarization: -62.43 SS G_CDS: -1.96 Total: -64.39 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 16 Polarization: 72.38 SS G_CDS: -3.04 Total: 69.34 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -37.61 -8.42 -46.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027664291.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.701 kcal (2) G-P(sol) polarization free energy of solvation -37.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds