Wall clock time and date at job start Tue Mar 31 2020 06:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86800 * 120.00402 * 2 1 4 4 H 1.48495 * 109.47353 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47044 * 300.00214 * 3 2 1 6 6 H 1.48497 * 109.46799 * 60.00104 * 3 2 1 7 7 C 1.38797 * 119.99767 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00439 * 179.97438 * 7 2 1 9 9 S 1.76208 * 120.00184 * 359.97438 * 7 2 1 10 10 C 1.76201 * 99.99996 * 180.02562 * 9 7 2 11 11 N 1.30958 * 118.46155 * 0.27718 * 10 9 7 12 12 C 1.34771 * 121.64446 * 180.26323 * 11 10 9 13 13 C 1.39842 * 121.54474 * 179.75341 * 12 11 10 14 14 C 1.36608 * 119.79839 * 179.97438 * 13 12 11 15 15 C 1.38913 * 120.98121 * 359.97438 * 14 13 12 16 16 C 1.37786 * 120.59030 * 0.02562 * 15 14 13 17 17 C 1.39386 * 119.40696 * 359.97438 * 16 15 14 18 18 C 1.46966 * 121.86458 * 180.02562 * 17 16 15 19 19 O 1.21723 * 121.26164 * 0.02562 * 18 17 16 20 20 N 1.35349 * 117.48106 * 179.97438 * 18 17 16 21 21 C 1.46503 * 119.78582 * 179.97438 * 20 18 17 22 22 C 1.50695 * 109.47313 * 89.99870 * 21 20 18 23 23 C 1.38678 * 120.41675 * 270.25293 * 22 21 20 24 24 C 1.38627 * 118.41930 * 180.24221 * 23 22 21 25 25 C 1.38232 * 119.16085 * 359.75178 * 24 23 22 26 26 N 1.31857 * 120.76541 * 359.97438 * 25 24 23 27 27 C 1.31889 * 121.72235 * 0.02562 * 26 25 24 28 28 H 0.97003 * 119.99305 * 359.97438 * 1 2 3 29 29 H 1.07991 * 120.09722 * 359.95419 * 13 12 11 30 30 H 1.07998 * 119.50742 * 179.97438 * 14 13 12 31 31 H 1.08000 * 119.70887 * 180.02562 * 15 14 13 32 32 H 1.07994 * 120.29995 * 180.02562 * 16 15 14 33 33 H 1.09001 * 109.46632 * 329.99678 * 21 20 18 34 34 H 1.08996 * 109.46728 * 209.99672 * 21 20 18 35 35 H 1.07994 * 120.78944 * 359.96926 * 23 22 21 36 36 H 1.07997 * 120.42083 * 179.72800 * 24 23 22 37 37 H 1.07999 * 119.61954 * 180.02562 * 25 24 23 38 38 H 1.08002 * 119.61237 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 3.7093 1.3463 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8907 2.3963 1.2125 7 6 2.0092 -1.2020 -0.0005 8 1 3.0892 -1.2022 -0.0010 9 16 1.1281 -2.7280 -0.0005 10 6 2.4779 -3.8607 -0.0005 11 7 3.6960 -3.3799 0.0050 12 6 4.7750 -4.1875 0.0001 13 6 6.0748 -3.6718 0.0010 14 6 7.1430 -4.5234 -0.0036 15 6 6.9597 -5.9004 -0.0086 16 6 5.6915 -6.4389 -0.0095 17 6 4.5869 -5.5888 -0.0049 18 6 3.2108 -6.1047 -0.0051 19 8 2.9846 -7.3007 -0.0088 20 7 2.2044 -5.1996 0.0001 21 6 0.8131 -5.6583 -0.0004 22 6 0.3376 -5.8221 1.4202 23 6 0.4952 -7.0326 2.0782 24 6 0.0381 -7.1388 3.3827 25 6 -0.5506 -6.0409 3.9816 26 7 -0.6790 -4.9035 3.3271 27 6 -0.2558 -4.7663 2.0855 28 1 -0.4849 0.8401 0.0004 29 1 6.2337 -2.6037 0.0049 30 1 8.1448 -4.1201 -0.0034 31 1 7.8189 -6.5547 -0.0117 32 1 5.5544 -7.5101 -0.0130 33 1 0.7462 -6.6150 -0.5185 34 1 0.1889 -4.9245 -0.5101 35 1 0.9590 -7.8738 1.5847 36 1 0.1404 -8.0677 3.9240 37 1 -0.9090 -6.1153 4.9977 38 1 -0.3786 -3.8190 1.5814 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028343655.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:59 Heat of formation + Delta-G solvation = 48.298492 kcal Electronic energy + Delta-G solvation = -26145.184013 eV Core-core repulsion = 22464.597303 eV Total energy + Delta-G solvation = -3680.586710 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 339.078 amu Computer time = 7.59 seconds Orbital eigenvalues (eV) -41.13067 -39.89033 -38.13183 -36.90348 -34.53615 -32.90910 -32.32488 -31.49277 -30.82057 -29.50222 -26.91124 -25.89787 -24.54975 -23.65086 -23.36687 -21.82155 -21.49410 -19.11363 -18.39905 -17.68544 -17.06739 -16.77491 -16.12503 -16.03105 -15.32465 -15.16710 -15.03968 -14.71352 -14.49981 -14.03803 -13.63286 -13.51564 -13.36831 -13.18746 -13.00742 -12.82200 -12.37208 -12.10495 -11.82449 -11.57663 -11.54704 -11.32504 -11.27149 -11.19276 -10.42547 -9.93461 -9.77918 -9.67321 -9.52773 -9.28087 -9.18098 -9.12676 -8.85587 -8.83486 -8.10688 -6.98405 -6.70278 -4.45990 0.93238 1.11735 1.20664 1.40303 2.20101 2.65272 3.01885 3.05213 3.12335 3.13532 3.21003 3.79299 3.98696 4.38107 4.52590 4.57337 4.68762 4.77492 4.87151 4.92127 5.03416 5.05232 5.12823 5.17372 5.24520 5.37532 5.53602 5.58479 5.67730 5.74535 5.82315 5.96635 6.19661 6.21777 6.34388 6.40018 6.45982 6.67555 6.71925 6.82501 6.99965 7.16366 7.38869 8.05860 8.12545 8.25151 8.50514 8.83938 10.36942 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.007704 B = 0.006145 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3633.830508 B = 4555.494686 C = 7485.030238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.078 3.922 3 Si 0.934 3.066 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.538 4.538 8 H 0.119 0.881 9 S 0.171 5.829 10 C 0.329 3.671 11 N -0.537 5.537 12 C 0.202 3.798 13 C -0.134 4.134 14 C -0.068 4.068 15 C -0.178 4.178 16 C -0.030 4.030 17 C -0.235 4.235 18 C 0.558 3.442 19 O -0.534 6.534 20 N -0.530 5.530 21 C 0.139 3.861 22 C -0.166 4.166 23 C -0.050 4.050 24 C -0.185 4.185 25 C 0.101 3.899 26 N -0.483 5.483 27 C 0.127 3.873 28 H 0.278 0.722 29 H 0.132 0.868 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.127 0.873 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.138 0.862 36 H 0.132 0.868 37 H 0.153 0.847 38 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.421 -10.184 1.847 10.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.133 4.133 3 Si 0.759 3.241 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.686 4.686 8 H 0.137 0.863 9 S 0.415 5.585 10 C -0.036 4.036 11 N -0.265 5.265 12 C 0.081 3.919 13 C -0.155 4.155 14 C -0.088 4.088 15 C -0.198 4.198 16 C -0.050 4.050 17 C -0.244 4.244 18 C 0.352 3.648 19 O -0.411 6.411 20 N -0.254 5.254 21 C 0.015 3.985 22 C -0.169 4.169 23 C -0.077 4.077 24 C -0.205 4.205 25 C -0.056 4.056 26 N -0.191 5.191 27 C -0.031 4.031 28 H 0.088 0.912 29 H 0.150 0.850 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.145 0.855 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.156 0.844 36 H 0.150 0.850 37 H 0.171 0.829 38 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 1.571 -9.340 2.248 9.735 hybrid contribution 2.155 -0.414 -0.350 2.223 sum 3.726 -9.754 1.898 10.613 Atomic orbital electron populations 1.69893 1.06233 1.29037 1.44912 1.25201 0.95209 1.00025 0.92853 0.85837 0.80185 0.79962 0.78121 1.18688 1.20206 1.20179 1.23690 0.98078 0.88676 1.58158 0.86281 1.83343 0.99561 0.97102 1.78467 1.26250 1.00128 0.85021 0.92218 1.69088 0.95125 1.32977 1.29346 1.18924 0.93589 0.88283 0.91071 1.20548 0.89890 1.00466 1.04621 1.20869 0.98558 0.93356 0.96032 1.20894 0.96461 0.95130 1.07321 1.20855 0.91148 0.99194 0.93759 1.20459 0.92902 0.94813 1.16250 1.18388 0.85117 0.85528 0.75790 1.90743 1.84936 1.14258 1.51207 1.46494 1.08113 1.06094 1.64736 1.20673 0.80601 1.03382 0.93802 1.21033 1.02557 0.95621 0.97726 1.21627 0.94474 0.97345 0.94236 1.22105 1.01681 1.00632 0.96073 1.22862 0.94688 0.88436 0.99648 1.67831 1.17393 1.25136 1.08777 1.23366 0.91122 0.98441 0.90134 0.91185 0.84986 0.85916 0.86075 0.85542 0.87438 0.87159 0.84410 0.84961 0.82924 0.81151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.11 13.22 55.49 0.73 -21.38 16 2 C 0.08 1.93 5.49 -17.48 -0.10 1.84 16 3 Si 0.93 19.60 29.55 -169.99 -5.02 14.58 16 4 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.54 -13.51 9.23 30.94 0.29 -13.22 16 8 H 0.12 3.07 6.48 -52.48 -0.34 2.73 16 9 S 0.17 3.74 16.87 -107.50 -1.81 1.93 16 10 C 0.33 6.92 7.77 -88.50 -0.69 6.24 16 11 N -0.54 -11.83 8.28 -10.89 -0.09 -11.92 16 12 C 0.20 4.00 6.62 -84.78 -0.56 3.44 16 13 C -0.13 -2.25 9.98 -39.57 -0.40 -2.65 16 14 C -0.07 -0.94 9.95 -39.92 -0.40 -1.34 16 15 C -0.18 -2.41 10.02 -39.50 -0.40 -2.80 16 16 C -0.03 -0.48 9.68 -39.32 -0.38 -0.86 16 17 C -0.23 -4.44 5.90 -104.74 -0.62 -5.06 16 18 C 0.56 10.80 7.66 -12.47 -0.10 10.70 16 19 O -0.53 -10.37 15.98 5.17 0.08 -10.29 16 20 N -0.53 -9.98 2.61 -118.67 -0.31 -10.29 16 21 C 0.14 2.19 5.11 -5.19 -0.03 2.16 16 22 C -0.17 -2.63 5.48 -104.48 -0.57 -3.20 16 23 C -0.05 -0.72 9.86 -39.28 -0.39 -1.11 16 24 C -0.19 -2.33 10.11 -39.44 -0.40 -2.73 16 25 C 0.10 1.37 11.18 -17.54 -0.20 1.18 16 26 N -0.48 -8.16 10.36 -13.25 -0.14 -8.29 16 27 C 0.13 2.18 10.47 -17.55 -0.18 2.00 16 28 H 0.28 6.63 8.31 -40.82 -0.34 6.29 16 29 H 0.13 2.12 8.06 -52.49 -0.42 1.70 16 30 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 31 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.13 1.85 7.83 -52.49 -0.41 1.44 16 33 H 0.11 1.53 7.42 -51.93 -0.39 1.14 16 34 H 0.11 1.64 6.42 -51.93 -0.33 1.31 16 35 H 0.14 1.89 7.72 -52.49 -0.41 1.49 16 36 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.17 3.10 5.69 -52.49 -0.30 2.81 16 LS Contribution 342.84 15.07 5.17 5.17 Total: -1.00 -29.15 342.84 -9.92 -39.07 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -3.42 Total: 6.86 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -5.11 Total: -5.43 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: 0.20 Total: -51.88 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.08 Total: -10.29 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Atomic # 16 Polarization: 3.74 SS G_CDS: -1.81 Total: 1.93 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.15 -9.92 -39.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028343655.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.368 kcal (2) G-P(sol) polarization free energy of solvation -29.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.59 seconds