Wall clock time and date at job start Tue Mar 31 2020 06:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30895 * 1 3 3 Si 1.86802 * 120.00025 * 2 1 4 4 H 1.48500 * 109.47455 * 274.98281 * 3 2 1 5 5 H 1.48504 * 109.46945 * 34.98272 * 3 2 1 6 6 H 1.48497 * 109.47289 * 154.98227 * 3 2 1 7 7 C 1.39872 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99980 * 161.45342 * 7 2 1 9 9 C 1.41138 * 119.99817 * 341.44904 * 7 2 1 10 10 C 1.40881 * 120.15383 * 154.32115 * 9 7 2 11 11 C 1.36338 * 119.83598 * 180.27467 * 10 9 7 12 12 C 1.39572 * 120.15922 * 359.52820 * 11 10 9 13 13 N 1.38853 * 119.84026 * 180.22981 * 12 11 10 14 14 S 1.65605 * 120.00216 * 313.78817 * 13 12 11 15 15 O 1.42104 * 106.39875 * 51.72395 * 14 13 12 16 16 O 1.42101 * 106.40356 * 184.64358 * 14 13 12 17 17 C 1.76197 * 107.21791 * 298.18519 * 14 13 12 18 18 C 1.38422 * 120.02414 * 276.04906 * 17 14 13 19 19 F 1.35098 * 120.01157 * 359.97438 * 18 17 14 20 20 C 1.38472 * 119.97204 * 179.70091 * 18 17 14 21 21 C 1.38215 * 120.02414 * 0.59437 * 20 18 17 22 22 C 1.38204 * 120.05210 * 359.68130 * 21 20 18 23 23 C 1.38422 * 120.02380 * 96.32147 * 17 14 13 24 24 F 1.35097 * 120.01365 * 359.97438 * 23 17 14 25 25 C 1.39564 * 120.31637 * 0.45746 * 12 11 10 26 26 C 1.36343 * 120.15808 * 359.79485 * 25 12 11 27 27 H 0.97005 * 119.99942 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.08545 * 0.02562 * 10 9 7 29 29 H 1.08003 * 119.92228 * 179.72473 * 11 10 9 30 30 H 0.97000 * 120.00143 * 133.79151 * 13 12 11 31 31 H 1.07996 * 119.99127 * 180.31804 * 20 18 17 32 32 H 1.08003 * 119.96974 * 179.69880 * 21 20 18 33 33 H 1.08005 * 119.98950 * 179.97438 * 22 21 20 34 34 H 1.07999 * 119.91650 * 179.77289 * 25 12 11 35 35 H 1.08003 * 120.07522 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.3852 2.1073 -1.3947 5 1 1.4970 2.6200 0.8027 6 1 3.5892 1.4121 0.5921 7 6 2.0084 -1.2113 -0.0005 8 1 3.0463 -1.2354 -0.2980 9 6 1.3577 -2.4020 0.3878 10 6 1.8120 -3.6459 -0.0928 11 6 1.1752 -4.7916 0.2820 12 6 0.0817 -4.7350 1.1476 13 7 -0.5590 -5.9064 1.5288 14 16 -0.9452 -7.0469 0.3918 15 8 0.2470 -7.3069 -0.3366 16 8 -1.6777 -8.0580 1.0703 17 6 -2.0663 -6.2954 -0.7408 18 6 -3.4188 -6.2503 -0.4496 19 9 -3.8799 -6.7830 0.7031 20 6 -4.2981 -5.6539 -1.3376 21 6 -3.8275 -5.1148 -2.5200 22 6 -2.4781 -5.1643 -2.8145 23 6 -1.5960 -5.7546 -1.9251 24 9 -0.2769 -5.8024 -2.2129 25 6 -0.3737 -3.5064 1.6279 26 6 0.2503 -2.3521 1.2574 27 1 -0.4850 0.8401 0.0004 28 1 2.6603 -3.6915 -0.7598 29 1 1.5196 -5.7456 -0.0891 30 1 -0.7805 -6.0568 2.4611 31 1 -5.3527 -5.6140 -1.1083 32 1 -4.5147 -4.6542 -3.2142 33 1 -2.1114 -4.7430 -3.7389 34 1 -1.2227 -3.4698 2.2945 35 1 -0.1035 -1.4020 1.6296 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000029967111.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:57 Heat of formation + Delta-G solvation = -107.035166 kcal Electronic energy + Delta-G solvation = -27434.645457 eV Core-core repulsion = 23160.800693 eV Total energy + Delta-G solvation = -4273.844763 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 339.053 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -49.22805 -48.95359 -38.76329 -38.10657 -36.81898 -35.57035 -34.86085 -32.88839 -31.37880 -30.44380 -29.64637 -28.77865 -24.80223 -23.80336 -23.03095 -21.39171 -20.86795 -19.38614 -18.36601 -17.65213 -17.46711 -17.31932 -17.08791 -16.40650 -15.94083 -15.64353 -15.36921 -15.26152 -15.11515 -14.61904 -14.45801 -14.09740 -13.57351 -12.91577 -12.83950 -12.67109 -12.52565 -12.23956 -12.18602 -12.13422 -11.80798 -11.74782 -11.53739 -11.44717 -11.23567 -11.12416 -10.82336 -10.72478 -9.86999 -9.85269 -9.63595 -9.27450 -9.21073 -8.85053 -7.68733 -7.25300 -6.92259 -4.44662 0.37170 0.70375 0.87104 2.60215 2.98366 3.00074 3.00783 3.02667 3.09441 3.33472 3.71409 3.82035 3.93313 4.13963 4.29159 4.45017 4.54707 4.93353 5.05508 5.36798 5.49196 5.51942 5.65993 5.83456 5.93233 6.06758 6.17935 6.42572 6.55842 6.85495 6.93325 6.98934 7.14690 7.33087 7.50482 7.89064 7.91172 7.94613 8.15337 8.47337 8.73272 8.82636 10.00876 Molecular weight = 339.05amu Principal moments of inertia in cm(-1) A = 0.015427 B = 0.004268 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.582757 B = 6558.242423 C = 7123.037364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.449 4.449 8 H 0.082 0.918 9 C 0.112 3.888 10 C -0.210 4.210 11 C -0.099 4.099 12 C -0.024 4.024 13 N -1.022 6.022 14 S 2.675 3.325 15 O -0.939 6.939 16 O -0.965 6.965 17 C -0.754 4.754 18 C 0.224 3.776 19 F -0.111 7.111 20 C -0.193 4.193 21 C -0.011 4.011 22 C -0.187 4.187 23 C 0.241 3.759 24 F -0.094 7.094 25 C -0.094 4.094 26 C -0.159 4.159 27 H 0.283 0.717 28 H 0.099 0.901 29 H 0.126 0.874 30 H 0.413 0.587 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.092 0.908 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.252 -5.529 -3.247 10.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.479 4.479 8 H 0.100 0.900 9 C 0.109 3.891 10 C -0.230 4.230 11 C -0.120 4.120 12 C -0.120 4.120 13 N -0.775 5.775 14 S 2.764 3.236 15 O -0.929 6.929 16 O -0.955 6.955 17 C -0.838 4.838 18 C 0.203 3.797 19 F -0.089 7.089 20 C -0.212 4.212 21 C -0.029 4.029 22 C -0.207 4.207 23 C 0.220 3.780 24 F -0.071 7.071 25 C -0.116 4.116 26 C -0.179 4.179 27 H 0.093 0.907 28 H 0.118 0.882 29 H 0.143 0.857 30 H 0.250 0.750 31 H 0.166 0.834 32 H 0.167 0.833 33 H 0.169 0.831 34 H 0.110 0.890 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.158 -6.317 -3.472 10.886 hybrid contribution -0.240 1.358 0.239 1.400 sum -8.398 -4.958 -3.232 10.274 Atomic orbital electron populations 1.69855 1.07678 1.29549 1.33854 1.25965 0.94751 1.01546 0.92120 0.86287 0.80874 0.80415 0.79171 1.19469 1.19953 1.18241 1.19638 0.98568 0.91306 1.38372 0.90003 1.17741 0.90886 0.92241 0.88268 1.20646 1.04016 0.92372 1.05990 1.21003 0.93543 0.99421 0.98058 1.16796 0.99670 0.83904 1.11620 1.52310 1.71039 1.34346 1.19784 1.03252 0.73827 0.73304 0.73260 1.93585 1.43351 1.83127 1.72855 1.93566 1.73507 1.55266 1.73131 1.31056 1.10731 1.25684 1.16333 1.16724 0.89930 0.90897 0.82159 1.91642 1.88775 1.82810 1.45687 1.21229 1.00686 1.03665 0.95631 1.21096 0.94763 0.92256 0.94806 1.21351 0.93628 1.04026 1.01688 1.16784 0.78916 0.91256 0.91033 1.91739 1.29931 1.92819 1.92639 1.20439 0.98649 0.91924 1.00596 1.20891 0.99805 0.96487 1.00748 0.90656 0.88235 0.85667 0.75045 0.83418 0.83326 0.83138 0.88981 0.86328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.93 11.07 55.54 0.61 -18.32 16 2 C 0.08 1.77 5.11 -17.34 -0.09 1.68 16 3 Si 0.91 17.52 29.60 -169.99 -5.03 12.49 16 4 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 6 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 7 C -0.45 -11.21 9.02 -37.87 -0.34 -11.55 16 8 H 0.08 1.96 7.91 -52.49 -0.42 1.55 16 9 C 0.11 2.82 5.56 -106.80 -0.59 2.23 16 10 C -0.21 -5.00 9.74 -39.27 -0.38 -5.38 16 11 C -0.10 -2.23 8.59 -39.77 -0.34 -2.58 16 12 C -0.02 -0.50 6.14 -83.69 -0.51 -1.01 16 13 N -1.02 -18.48 5.72 32.51 0.19 -18.29 16 14 S 2.67 49.05 5.51 -107.50 -0.59 48.46 16 15 O -0.94 -19.08 13.06 -57.17 -0.75 -19.83 16 16 O -0.96 -18.48 16.45 -57.17 -0.94 -19.43 16 17 C -0.75 -12.87 5.84 -39.45 -0.23 -13.10 16 18 C 0.22 3.39 7.20 -39.43 -0.28 3.11 16 19 F -0.11 -1.74 15.54 2.25 0.04 -1.70 16 20 C -0.19 -2.26 10.03 -39.50 -0.40 -2.65 16 21 C -0.01 -0.12 10.04 -39.60 -0.40 -0.51 16 22 C -0.19 -2.44 10.02 -39.51 -0.40 -2.84 16 23 C 0.24 4.03 7.22 -39.43 -0.28 3.75 16 24 F -0.09 -1.76 14.62 2.25 0.03 -1.72 16 25 C -0.09 -2.06 9.90 -39.77 -0.39 -2.46 16 26 C -0.16 -3.86 8.63 -39.26 -0.34 -4.20 16 27 H 0.28 6.17 8.30 -40.82 -0.34 5.84 16 28 H 0.10 2.25 8.06 -52.48 -0.42 1.82 16 29 H 0.13 2.78 5.66 -52.48 -0.30 2.48 16 30 H 0.41 6.31 8.95 -34.47 -0.31 6.01 16 31 H 0.15 1.26 8.06 -52.49 -0.42 0.83 16 32 H 0.15 0.97 8.06 -52.48 -0.42 0.54 16 33 H 0.15 1.59 8.06 -52.48 -0.42 1.17 16 34 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 35 H 0.12 2.95 6.27 -52.48 -0.33 2.62 16 LS Contribution 323.32 15.07 4.87 4.87 Total: -1.00 -29.70 323.32 -9.15 -38.85 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -2.60 Total: 10.13 kcal Atomic # 6 Polarization: -30.53 SS G_CDS: -4.98 Total: -35.51 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.80 Total: -36.61 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -1.69 Total: -39.25 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.07 Total: -3.43 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.49 kcal Atomic # 16 Polarization: 49.05 SS G_CDS: -0.59 Total: 48.46 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.70 -9.15 -38.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029967111.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.182 kcal (2) G-P(sol) polarization free energy of solvation -29.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds