Wall clock time and date at job start Tue Mar 31 2020 06:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31547 * 1 3 3 Si 1.86795 * 120.00133 * 2 1 4 4 H 1.48500 * 109.47267 * 269.99996 * 3 2 1 5 5 H 1.48503 * 109.47186 * 29.99995 * 3 2 1 6 6 H 1.48499 * 109.47265 * 149.99688 * 3 2 1 7 7 C 1.38808 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99869 * 0.02562 * 7 2 1 9 9 S 1.76200 * 119.99950 * 180.02562 * 7 2 1 10 10 C 1.76208 * 99.99983 * 185.01555 * 9 7 2 11 11 C 1.39110 * 120.18685 * 352.58319 * 10 9 7 12 12 C 1.37913 * 120.04658 * 180.02562 * 11 10 9 13 13 C 1.38667 * 120.44430 * 359.97438 * 12 11 10 14 14 C 1.37801 * 120.37990 * 359.97438 * 13 12 11 15 15 C 1.39693 * 119.93811 * 0.02562 * 14 13 12 16 16 C 1.47393 * 120.21641 * 179.72870 * 15 14 13 17 17 O 1.21618 * 120.00369 * 179.97438 * 16 15 14 18 18 N 1.34786 * 119.99670 * 0.02562 * 16 15 14 19 19 C 1.39840 * 119.99510 * 184.45047 * 18 16 15 20 20 C 1.38914 * 120.10944 * 144.76407 * 19 18 16 21 21 C 1.37959 * 119.86356 * 179.97438 * 20 19 18 22 22 C 1.38571 * 120.31096 * 0.02562 * 21 20 19 23 23 C 1.38277 * 119.96783 * 359.97438 * 22 21 20 24 24 C 1.38381 * 119.92329 * 359.72701 * 23 22 21 25 25 C 1.51386 * 109.75713 * 180.02562 * 23 22 21 26 26 C 1.54346 * 105.16920 * 342.79733 * 25 23 22 27 27 C 1.51406 * 130.29986 * 179.97438 * 22 21 20 28 28 H 0.97000 * 120.00360 * 359.97438 * 1 2 3 29 29 H 1.07999 * 119.97564 * 0.02562 * 11 10 9 30 30 H 1.08004 * 119.77515 * 180.02562 * 12 11 10 31 31 H 1.08000 * 119.80595 * 179.97438 * 13 12 11 32 32 H 1.07996 * 120.02807 * 179.97438 * 14 13 12 33 33 H 0.96994 * 119.99809 * 4.45119 * 18 16 15 34 34 H 1.08002 * 120.06533 * 0.02567 * 20 19 18 35 35 H 1.08001 * 119.84594 * 179.97438 * 21 20 19 36 36 H 1.07995 * 119.92526 * 180.29751 * 24 23 22 37 37 H 1.08996 * 110.30279 * 223.87674 * 25 23 22 38 38 H 1.08997 * 110.38711 * 101.76161 * 25 23 22 39 39 H 1.08990 * 110.82133 * 268.14806 * 26 25 23 40 40 H 1.08999 * 110.98662 * 144.67887 * 26 25 23 41 41 H 1.08995 * 110.30048 * 316.12650 * 27 22 21 42 42 H 1.08997 * 110.29792 * 78.27856 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5470 1.4401 0.7001 7 6 2.0095 -1.2021 0.0005 8 1 1.4695 -2.1374 0.0005 9 16 3.7715 -1.2021 0.0012 10 6 4.0776 -2.9308 -0.1500 11 6 3.0247 -3.8368 -0.0739 12 6 3.2676 -5.1892 -0.1921 13 6 4.5583 -5.6568 -0.3876 14 6 5.6144 -4.7752 -0.4668 15 6 5.3866 -3.4020 -0.3492 16 6 6.5124 -2.4539 -0.4270 17 8 6.3096 -1.2592 -0.3246 18 7 7.7667 -2.9110 -0.6127 19 6 8.8452 -2.0210 -0.5934 20 6 10.0668 -2.4177 -0.0643 21 6 11.1275 -1.5357 -0.0483 22 6 10.9800 -0.2554 -0.5574 23 6 9.7654 0.1426 -1.0848 24 6 8.7004 -0.7407 -1.1085 25 6 9.8627 1.5729 -1.5714 26 6 11.1244 2.1458 -0.8915 27 6 11.9759 0.8810 -0.6532 28 1 -0.4851 0.8400 0.0004 29 1 2.0164 -3.4809 0.0779 30 1 2.4469 -5.8888 -0.1328 31 1 4.7368 -6.7181 -0.4784 32 1 6.6174 -5.1456 -0.6188 33 1 7.9213 -3.8573 -0.7596 34 1 10.1861 -3.4149 0.3331 35 1 12.0770 -1.8443 0.3635 36 1 7.7531 -0.4315 -1.5249 37 1 8.9806 2.1365 -1.2678 38 1 9.9726 1.5985 -2.6555 39 1 10.8711 2.6255 0.0538 40 1 11.6412 2.8425 -1.5514 41 1 12.5367 0.9719 0.2770 42 1 12.6545 0.7195 -1.4907 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000030065538.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:29 Heat of formation + Delta-G solvation = 18.880748 kcal Electronic energy + Delta-G solvation = -25564.578059 eV Core-core repulsion = 21986.256044 eV Total energy + Delta-G solvation = -3578.322015 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.103 amu Computer time = 5.88 seconds Orbital eigenvalues (eV) -40.62200 -39.40882 -37.78773 -36.05200 -33.72198 -32.76233 -31.40099 -30.59416 -30.45292 -28.39777 -27.02755 -25.96218 -23.93061 -22.72461 -22.15482 -20.97602 -20.85202 -20.10107 -18.47109 -17.39014 -16.72379 -16.12024 -15.76439 -15.72008 -15.25820 -15.00449 -14.87182 -14.43449 -14.17982 -13.90467 -13.53191 -13.29280 -13.24761 -12.96717 -12.78806 -12.68835 -12.17579 -11.97286 -11.91985 -11.61088 -11.37283 -11.26967 -11.22081 -11.14183 -10.99251 -10.90681 -10.56696 -9.98941 -9.76323 -9.71754 -9.52655 -8.90622 -8.68543 -8.53616 -8.28089 -7.88463 -6.86710 -6.52469 -4.24599 1.15242 1.42850 1.51083 1.84769 2.81028 3.17709 3.20549 3.24099 3.32783 3.42331 3.80982 4.10875 4.30156 4.37192 4.50248 4.57780 4.88018 4.90743 4.97797 5.04534 5.07779 5.15761 5.24619 5.34357 5.45967 5.52523 5.60734 5.65713 5.70817 5.76297 5.84920 5.93990 5.97517 6.04337 6.14125 6.18213 6.32230 6.40743 6.45464 6.58039 6.66688 6.73477 6.87822 6.99004 7.14645 7.37676 7.60291 7.70800 8.30370 8.46694 8.91274 10.54624 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010712 B = 0.003816 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.212084 B = 7336.141051 C = 9808.614718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.104 3.896 3 Si 0.850 3.150 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.235 1.235 7 C -0.581 4.581 8 H 0.107 0.893 9 S 0.090 5.910 10 C -0.029 4.029 11 C -0.144 4.144 12 C -0.074 4.074 13 C -0.176 4.176 14 C -0.064 4.064 15 C -0.175 4.175 16 C 0.553 3.447 17 O -0.493 6.493 18 N -0.678 5.678 19 C 0.159 3.841 20 C -0.151 4.151 21 C -0.090 4.090 22 C -0.123 4.123 23 C -0.078 4.078 24 C -0.109 4.109 25 C -0.084 4.084 26 C -0.121 4.121 27 C -0.077 4.077 28 H 0.275 0.725 29 H 0.147 0.853 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.407 0.593 34 H 0.125 0.875 35 H 0.120 0.880 36 H 0.141 0.859 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.020 -4.776 -2.059 21.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.107 4.107 3 Si 0.674 3.326 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.159 1.159 7 C -0.727 4.727 8 H 0.125 0.875 9 S 0.352 5.648 10 C -0.148 4.148 11 C -0.168 4.168 12 C -0.096 4.096 13 C -0.200 4.200 14 C -0.084 4.084 15 C -0.190 4.190 16 C 0.344 3.656 17 O -0.369 6.369 18 N -0.324 5.324 19 C 0.065 3.935 20 C -0.172 4.172 21 C -0.109 4.109 22 C -0.124 4.124 23 C -0.078 4.078 24 C -0.129 4.129 25 C -0.121 4.121 26 C -0.158 4.158 27 C -0.114 4.114 28 H 0.086 0.914 29 H 0.165 0.835 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.243 0.757 34 H 0.142 0.858 35 H 0.138 0.862 36 H 0.158 0.842 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 21.203 -2.515 -1.846 21.432 hybrid contribution -0.802 -1.091 -0.112 1.359 sum 20.401 -3.606 -1.957 20.810 Atomic orbital electron populations 1.69900 1.06150 1.28357 1.45013 1.24792 0.94525 0.99036 0.92335 0.86875 0.81935 0.83365 0.80448 1.18648 1.19336 1.15902 1.23534 0.91738 0.98404 1.59012 0.87540 1.84080 1.05328 0.97149 1.78254 1.22509 0.93923 1.01395 0.96945 1.21583 1.00124 0.92458 1.02646 1.21169 0.96512 0.95294 0.96612 1.20730 0.92893 0.98764 1.07580 1.20899 0.98195 0.91766 0.97545 1.19024 0.91863 0.92892 1.15192 1.18420 0.82100 0.88610 0.76461 1.90765 1.82729 1.15847 1.47561 1.43421 1.05235 1.10731 1.73042 1.17551 0.87344 0.91059 0.97576 1.20750 0.92767 1.00664 1.02991 1.20292 0.98287 0.92334 0.99978 1.20536 0.95772 0.94910 1.01211 1.20431 0.93258 0.95884 0.98270 1.20813 0.99502 0.92568 1.00041 1.21050 0.98868 0.91824 1.00337 1.22284 0.95644 0.96849 1.01020 1.20976 0.96558 0.91995 1.01861 0.91446 0.83529 0.86470 0.86621 0.86895 0.75676 0.85751 0.86221 0.84159 0.90414 0.90259 0.90999 0.90718 0.91075 0.90626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.89 13.96 55.49 0.77 -24.12 16 2 C 0.10 2.93 5.50 -17.46 -0.10 2.83 16 3 Si 0.85 20.79 27.74 -169.99 -4.71 16.07 16 4 H -0.26 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.24 -5.75 6.74 56.52 0.38 -5.37 16 7 C -0.58 -16.12 9.62 30.94 0.30 -15.83 16 8 H 0.11 3.03 5.07 -52.49 -0.27 2.77 16 9 S 0.09 2.26 16.53 -107.50 -1.78 0.48 16 10 C -0.03 -0.62 6.14 -38.39 -0.24 -0.86 16 11 C -0.14 -2.92 9.25 -39.38 -0.36 -3.29 16 12 C -0.07 -1.20 10.03 -39.54 -0.40 -1.60 16 13 C -0.18 -2.51 10.02 -39.58 -0.40 -2.91 16 14 C -0.06 -0.93 9.53 -39.20 -0.37 -1.31 16 15 C -0.18 -3.25 5.89 -104.76 -0.62 -3.87 16 16 C 0.55 10.15 7.59 -12.53 -0.10 10.05 16 17 O -0.49 -10.70 11.24 5.26 0.06 -10.64 16 18 N -0.68 -9.60 5.28 -10.87 -0.06 -9.66 16 19 C 0.16 2.29 6.29 -83.76 -0.53 1.77 16 20 C -0.15 -1.78 9.97 -39.43 -0.39 -2.18 16 21 C -0.09 -1.00 10.03 -39.56 -0.40 -1.40 16 22 C -0.12 -1.46 6.14 -104.14 -0.64 -2.10 16 23 C -0.08 -1.06 6.13 -104.22 -0.64 -1.70 16 24 C -0.11 -1.71 8.69 -39.33 -0.34 -2.06 16 25 C -0.08 -0.93 6.77 -26.84 -0.18 -1.12 16 26 C -0.12 -1.07 7.08 -25.34 -0.18 -1.25 16 27 C -0.08 -0.69 6.77 -26.84 -0.18 -0.88 16 28 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.15 3.25 4.97 -52.49 -0.26 2.99 16 30 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 31 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 32 H 0.11 1.19 6.41 -52.49 -0.34 0.85 16 33 H 0.41 4.33 6.86 -40.82 -0.28 4.05 16 34 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 36 H 0.14 2.51 6.25 -52.49 -0.33 2.18 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 356.10 15.07 5.37 5.37 Total: -1.00 -31.71 356.10 -10.96 -42.67 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -4.86 Total: 7.51 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: -5.76 Total: -27.68 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.72 Total: -33.78 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.06 Total: -10.64 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.71 Total: 16.07 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -1.78 Total: 0.48 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.71 -10.96 -42.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000030065538.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.554 kcal (2) G-P(sol) polarization free energy of solvation -31.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.88 seconds