Wall clock time and date at job start Tue Mar 31 2020 07:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.47032 * 2 1 4 4 H 1.09000 * 109.47425 * 55.00134 * 3 2 1 5 5 O 1.42896 * 109.47143 * 294.99629 * 3 2 1 6 6 C 1.35901 * 116.99967 * 94.45117 * 5 3 2 7 7 C 1.38757 * 120.05279 * 4.66128 * 6 5 3 8 8 C 1.38124 * 119.94314 * 179.70316 * 7 6 5 9 9 C 1.38294 * 120.05245 * 0.58487 * 8 7 6 10 10 C 1.38241 * 120.11257 * 359.69074 * 9 8 7 11 11 C 1.38164 * 120.05604 * 0.02562 * 10 9 8 12 12 C 1.50699 * 120.02997 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.46811 * 174.99833 * 3 2 1 14 14 O 1.21281 * 119.99876 * 114.99987 * 13 3 2 15 15 N 1.34776 * 120.00294 * 295.00047 * 13 3 2 16 16 C 1.39237 * 119.99770 * 174.33621 * 15 13 3 17 17 C 1.39473 * 119.83860 * 325.31977 * 16 15 13 18 18 C 1.36372 * 120.17243 * 180.23632 * 17 16 15 19 19 C 1.40871 * 119.82906 * 359.50290 * 18 17 16 20 20 C 1.41145 * 120.16773 * 180.25407 * 19 18 17 21 21 H 1.08005 * 120.00246 * 34.56442 * 20 19 18 22 22 C 1.39903 * 120.00135 * 214.57078 * 20 19 18 23 23 N 1.30878 * 119.99785 * 5.49562 * 22 20 19 24 24 Si 1.86802 * 120.00162 * 185.49300 * 22 20 19 25 25 H 1.48501 * 109.46895 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.46834 * 120.00013 * 24 22 20 27 27 H 1.48501 * 109.47291 * 239.99822 * 24 22 20 28 28 C 1.40870 * 119.66703 * 0.49254 * 19 18 17 29 29 C 1.36381 * 119.83096 * 359.76363 * 28 19 18 30 30 H 1.08996 * 109.47284 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46801 * 300.00211 * 1 2 3 32 32 H 1.08999 * 109.46822 * 59.99904 * 1 2 3 33 33 H 1.08997 * 109.46801 * 239.99789 * 2 1 3 34 34 H 1.08999 * 109.46822 * 120.00096 * 2 1 3 35 35 H 1.07999 * 120.02688 * 359.96785 * 7 6 5 36 36 H 1.07993 * 119.97144 * 180.29454 * 8 7 6 37 37 H 1.07999 * 119.94190 * 179.70056 * 9 8 7 38 38 H 1.08001 * 119.97253 * 180.02562 * 10 9 8 39 39 H 1.08997 * 109.47189 * 269.98116 * 12 11 10 40 40 H 1.09006 * 109.47289 * 29.97591 * 12 11 10 41 41 H 1.09002 * 109.47561 * 149.98053 * 12 11 10 42 42 H 0.96996 * 119.99544 * 354.33403 * 15 13 3 43 43 H 1.08007 * 119.91296 * 359.96195 * 17 16 15 44 44 H 1.08001 * 120.08708 * 179.74748 * 18 17 16 45 45 H 0.96996 * 119.99519 * 180.02562 * 23 22 20 46 46 H 1.07997 * 120.08429 * 179.72765 * 28 19 18 47 47 H 1.07995 * 119.91380 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6621 2.0813 -1.2210 6 6 0.5093 2.8009 -1.2097 7 6 -0.1922 2.9709 -0.0246 8 6 -1.3603 3.7079 -0.0146 9 6 -1.8372 4.2660 -1.1866 10 6 -1.1432 4.0933 -2.3696 11 6 0.0289 3.3619 -2.3838 12 6 0.7852 3.1745 -3.6737 13 6 3.5420 1.4442 0.1239 14 8 4.2251 1.8609 -0.7875 15 7 4.1261 0.9826 1.2474 16 6 5.5124 0.8739 1.3170 17 6 6.2392 0.5257 0.1787 18 6 7.5969 0.4125 0.2404 19 6 8.2660 0.6585 1.4553 20 6 9.6715 0.5487 1.5259 21 1 10.2783 0.8287 0.6775 22 6 10.2784 0.0770 2.6948 23 7 9.5417 -0.3635 3.6828 24 14 12.1404 0.0757 2.8454 25 1 12.7381 0.6194 1.5994 26 1 12.5443 0.9201 3.9982 27 1 12.6189 -1.3139 3.0579 28 6 7.5251 1.0098 2.6007 29 6 6.1674 1.1140 2.5249 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 0.1772 2.5309 0.8899 36 1 -1.9041 3.8445 0.9084 37 1 -2.7533 4.8379 -1.1775 38 1 -1.5175 4.5305 -3.2835 39 1 0.4315 2.2734 -4.1747 40 1 0.6216 4.0372 -4.3196 41 1 1.8497 3.0772 -3.4600 42 1 3.5806 0.7263 2.0074 43 1 5.7251 0.3408 -0.7530 44 1 8.1579 0.1388 -0.6409 45 1 9.9626 -0.6902 4.4933 46 1 8.0308 1.1956 3.5367 47 1 5.5980 1.3828 3.4022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000030868338.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:01 Heat of formation + Delta-G solvation = -29.451365 kcal Electronic energy + Delta-G solvation = -28468.541258 eV Core-core repulsion = 24581.203628 eV Total energy + Delta-G solvation = -3887.337630 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 2.62 seconds Orbital eigenvalues (eV) -40.92610 -39.55666 -37.86217 -36.97423 -34.57070 -34.01801 -32.93277 -32.57235 -30.38571 -29.65951 -29.18216 -27.66940 -26.78434 -24.83719 -23.28950 -22.22425 -21.73513 -21.37173 -20.68538 -19.56205 -18.43041 -17.52223 -17.25768 -16.25720 -16.04668 -15.84397 -15.66890 -15.17854 -14.67691 -14.66940 -14.05609 -13.97229 -13.94747 -13.66652 -13.29628 -13.02614 -12.81139 -12.71164 -12.43685 -12.36296 -12.17733 -12.14265 -12.00078 -11.77143 -11.58110 -11.54120 -11.36080 -11.19365 -11.13061 -10.92773 -10.65658 -10.55998 -10.05848 -9.79497 -9.37425 -9.22203 -8.99706 -8.82081 -8.21408 -7.60538 -6.94144 -6.70382 -4.35470 1.12619 1.26661 2.42143 2.73846 2.93991 3.03617 3.08591 3.14161 3.28339 3.55028 3.79505 3.95700 4.40936 4.57349 4.60557 4.66267 4.67084 4.79987 4.90490 4.96048 5.10777 5.18967 5.24212 5.38379 5.46595 5.52201 5.62481 5.62712 5.68714 5.70454 5.82508 5.98995 6.11956 6.13311 6.15625 6.29311 6.33859 6.35907 6.59743 6.67449 6.84758 7.01541 7.14446 7.21813 7.27407 7.56067 7.64758 7.80578 8.01785 8.17063 8.24831 8.55694 8.65571 8.88028 8.94722 10.25346 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.026119 B = 0.002129 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.758168 B =13146.991610 C =13484.629121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.139 4.139 3 C 0.066 3.934 4 H 0.099 0.901 5 O -0.276 6.276 6 C 0.136 3.864 7 C -0.210 4.210 8 C -0.086 4.086 9 C -0.159 4.159 10 C -0.084 4.084 11 C -0.116 4.116 12 C -0.108 4.108 13 C 0.500 3.500 14 O -0.507 6.507 15 N -0.646 5.646 16 C 0.004 3.996 17 C -0.080 4.080 18 C -0.205 4.205 19 C 0.107 3.893 20 C -0.462 4.462 21 H 0.078 0.922 22 C 0.071 3.929 23 N -0.809 5.809 24 Si 0.913 3.087 25 H -0.262 1.262 26 H -0.274 1.274 27 H -0.275 1.275 28 C -0.139 4.139 29 C -0.116 4.116 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.131 0.869 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.127 0.873 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.395 0.605 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.278 0.722 46 H 0.122 0.878 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.339 3.490 -4.036 21.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.176 4.176 3 C 0.006 3.994 4 H 0.116 0.884 5 O -0.188 6.188 6 C 0.090 3.910 7 C -0.228 4.228 8 C -0.104 4.104 9 C -0.177 4.177 10 C -0.102 4.102 11 C -0.117 4.117 12 C -0.165 4.165 13 C 0.284 3.716 14 O -0.382 6.382 15 N -0.291 5.291 16 C -0.088 4.088 17 C -0.100 4.100 18 C -0.225 4.225 19 C 0.104 3.896 20 C -0.493 4.493 21 H 0.096 0.904 22 C -0.144 4.144 23 N -0.436 5.436 24 Si 0.737 3.263 25 H -0.185 1.185 26 H -0.199 1.199 27 H -0.200 1.200 28 C -0.159 4.159 29 C -0.136 4.136 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.148 0.852 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.145 0.855 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.229 0.771 43 H 0.119 0.881 44 H 0.115 0.885 45 H 0.089 0.911 46 H 0.140 0.860 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -20.685 3.641 -4.661 21.513 hybrid contribution 0.408 -0.246 0.934 1.049 sum -20.276 3.395 -3.727 20.893 Atomic orbital electron populations 1.21913 0.94566 1.02395 1.02306 1.21992 0.97107 0.94091 1.04454 1.22387 0.93852 0.95047 0.88122 0.88376 1.86226 1.36987 1.62198 1.33433 1.18897 0.86077 0.92262 0.93763 1.21298 0.98536 1.05547 0.97439 1.20886 0.95240 0.96020 0.98235 1.21009 1.01076 1.02851 0.92811 1.20880 0.93586 0.97429 0.98315 1.19296 0.97005 1.01364 0.94035 1.20644 1.00905 1.01660 0.93299 1.20079 0.88591 0.79067 0.83856 1.90738 1.64267 1.44330 1.38823 1.42869 1.06782 1.63802 1.15646 1.17154 0.80274 1.15357 0.96040 1.20249 0.94306 0.99377 0.96106 1.20793 0.93012 1.09898 0.98795 1.17701 0.93623 0.87557 0.90694 1.19544 0.91927 1.38607 0.99218 0.90425 1.25873 1.00674 0.93027 0.94824 1.69792 1.37326 1.31418 1.05109 0.86189 0.82267 0.78544 0.79254 1.18525 1.19890 1.20036 1.20943 0.91718 1.03188 1.00078 1.20258 0.95266 1.03319 0.94800 0.91957 0.92362 0.92107 0.89971 0.89595 0.85158 0.85951 0.86093 0.85543 0.91463 0.91813 0.90513 0.77091 0.88096 0.88467 0.91118 0.86043 0.89019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.50 37.16 0.32 -1.02 16 2 C -0.14 -1.45 5.61 -26.73 -0.15 -1.60 16 3 C 0.07 0.85 2.57 -27.88 -0.07 0.78 16 4 H 0.10 1.03 5.28 -51.93 -0.27 0.75 16 5 O -0.28 -4.02 8.24 -39.29 -0.32 -4.34 16 6 C 0.14 1.70 5.23 -39.22 -0.20 1.49 16 7 C -0.21 -2.18 7.30 -39.43 -0.29 -2.46 16 8 C -0.09 -0.77 10.04 -39.60 -0.40 -1.17 16 9 C -0.16 -1.39 10.04 -39.56 -0.40 -1.79 16 10 C -0.08 -0.80 9.70 -39.61 -0.38 -1.18 16 11 C -0.12 -1.34 5.89 -104.48 -0.62 -1.96 16 12 C -0.11 -1.17 9.79 36.01 0.35 -0.82 16 13 C 0.50 8.69 6.89 -10.98 -0.08 8.61 16 14 O -0.51 -11.24 14.27 -14.30 -0.20 -11.45 16 15 N -0.65 -10.96 5.19 -9.74 -0.05 -11.01 16 16 C 0.00 0.08 6.26 -83.57 -0.52 -0.45 16 17 C -0.08 -1.91 8.57 -39.79 -0.34 -2.26 16 18 C -0.20 -5.18 9.74 -39.26 -0.38 -5.56 16 19 C 0.11 2.84 5.50 -106.80 -0.59 2.26 16 20 C -0.46 -12.27 9.03 -37.86 -0.34 -12.62 16 21 H 0.08 2.00 7.85 -52.48 -0.41 1.59 16 22 C 0.07 1.79 5.31 -17.33 -0.09 1.70 16 23 N -0.81 -20.73 10.96 55.55 0.61 -20.13 16 24 Si 0.91 18.80 29.56 -169.99 -5.03 13.78 16 25 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 26 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 27 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 28 C -0.14 -3.53 8.57 -39.26 -0.34 -3.87 16 29 C -0.12 -2.60 9.90 -39.79 -0.39 -2.99 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.43 7.00 -51.93 -0.36 0.07 16 32 H 0.06 0.60 6.34 -51.93 -0.33 0.27 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.09 0.78 7.95 -51.93 -0.41 0.37 16 35 H 0.13 1.16 4.76 -52.49 -0.25 0.91 16 36 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 38 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 41 H 0.08 1.00 7.53 -51.93 -0.39 0.61 16 42 H 0.40 5.10 8.72 -40.82 -0.36 4.75 16 43 H 0.10 2.37 6.51 -52.48 -0.34 2.03 16 44 H 0.10 2.34 8.06 -52.49 -0.42 1.91 16 45 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 46 H 0.12 3.16 6.46 -52.49 -0.34 2.83 16 47 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 LS Contribution 383.47 15.07 5.78 5.78 Total: -1.00 -31.22 383.47 -10.54 -41.76 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -6.41 Total: 10.51 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: -4.91 Total: -24.90 kcal Atomic # 7 Polarization: -31.70 SS G_CDS: 0.56 Total: -31.14 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.53 Total: -15.79 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.22 -10.54 -41.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000030868338.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.309 kcal (2) G-P(sol) polarization free energy of solvation -31.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.63 seconds