Wall clock time and date at job start Tue Mar 31 2020 06:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50700 * 119.99897 * 2 1 4 4 C 1.50703 * 119.99883 * 179.97438 * 2 1 3 5 5 O 1.45195 * 109.47074 * 0.02562 * 4 2 1 6 6 C 1.34717 * 116.99524 * 179.97438 * 5 4 2 7 7 O 1.21462 * 120.00170 * 359.97438 * 6 5 4 8 8 C 1.47729 * 119.99714 * 180.02562 * 6 5 4 9 9 C 1.39622 * 120.15060 * 180.02562 * 8 6 5 10 10 C 1.37945 * 119.84969 * 180.02562 * 9 8 6 11 11 C 1.38365 * 120.15161 * 0.02562 * 10 9 8 12 12 S 1.76197 * 119.85065 * 179.97438 * 11 10 9 13 13 O 1.42100 * 106.39925 * 336.45651 * 12 11 10 14 14 O 1.42103 * 106.39966 * 203.53767 * 12 11 10 15 15 N 1.65597 * 107.21750 * 89.99747 * 12 11 10 16 16 C 1.46506 * 120.00079 * 65.00357 * 15 12 11 17 17 C 1.50699 * 109.47214 * 164.72113 * 16 15 12 18 18 H 1.07997 * 119.99775 * 359.97438 * 17 16 15 19 19 C 1.37872 * 119.99959 * 179.97438 * 17 16 15 20 20 N 1.31519 * 120.00023 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00046 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46915 * 60.00523 * 21 19 17 23 23 H 1.48506 * 109.46921 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47393 * 300.00333 * 21 19 17 25 25 C 1.38370 * 120.29814 * 0.23362 * 11 10 9 26 26 C 1.37943 * 120.15314 * 359.48790 * 25 11 10 27 27 H 1.07991 * 119.99852 * 0.02562 * 1 2 3 28 28 H 1.08004 * 119.99696 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47126 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.46858 * 299.99513 * 3 2 1 31 31 H 1.08997 * 109.47088 * 59.99704 * 3 2 1 32 32 H 1.09002 * 109.46933 * 240.00185 * 4 2 1 33 33 H 1.08998 * 109.46646 * 120.00746 * 4 2 1 34 34 H 1.08004 * 120.07280 * 359.97438 * 9 8 6 35 35 H 1.08001 * 119.92448 * 179.97438 * 10 9 8 36 36 H 0.97005 * 120.00050 * 244.72378 * 15 12 11 37 37 H 1.08999 * 109.46682 * 284.72550 * 16 15 12 38 38 H 1.09000 * 109.47243 * 44.71866 * 16 15 12 39 39 H 0.97001 * 120.00013 * 179.97438 * 20 19 17 40 40 H 1.07998 * 119.92018 * 179.72619 * 25 11 10 41 41 H 1.07998 * 120.07644 * 180.25923 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 8 1.1200 -2.4087 0.0005 6 6 1.6350 -3.6536 0.0004 7 8 2.8391 -3.8127 0.0000 8 6 0.7351 -4.8251 -0.0003 9 6 1.2653 -6.1167 0.0002 10 6 0.4193 -7.2063 -0.0010 11 6 -0.9519 -7.0214 -0.0032 12 16 -2.0253 -8.4188 -0.0054 13 8 -1.2777 -9.4980 -0.5490 14 8 -3.2599 -7.9755 -0.5517 15 7 -2.3264 -8.8080 1.5758 16 6 -3.0599 -7.8736 2.4333 17 6 -3.5257 -8.5906 3.6743 18 1 -3.2986 -9.6376 3.8103 19 6 -4.2419 -7.9099 4.6358 20 7 -4.5189 -6.6350 4.4698 21 14 -4.8200 -8.7987 6.1737 22 1 -3.6446 -9.3290 6.9103 23 1 -5.5634 -7.8515 7.0430 24 1 -5.7121 -9.9223 5.7903 25 6 -1.4841 -5.7442 -0.0091 26 6 -0.6497 -4.6458 -0.0021 27 1 -0.5399 0.9352 -0.0004 28 1 -0.5400 -0.9354 -0.0004 29 1 3.1352 1.1060 0.0005 30 1 1.8002 1.8766 -0.8900 31 1 1.8001 1.8767 0.8899 32 1 2.6902 -1.3625 0.8906 33 1 2.6902 -1.3632 -0.8893 34 1 2.3355 -6.2624 0.0006 35 1 0.8282 -8.2059 -0.0010 36 1 -2.0207 -9.6565 1.9331 37 1 -2.4056 -7.0484 2.7144 38 1 -3.9228 -7.4851 1.8926 39 1 -5.0231 -6.1561 5.1462 40 1 -2.5554 -5.6070 -0.0152 41 1 -1.0664 -3.6495 -0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032842610.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:45 Heat of formation + Delta-G solvation = -118.904840 kcal Electronic energy + Delta-G solvation = -26233.291542 eV Core-core repulsion = 22205.852681 eV Total energy + Delta-G solvation = -4027.438861 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 3.97 seconds Orbital eigenvalues (eV) -40.89054 -38.98443 -37.24329 -36.83420 -35.44965 -35.28324 -34.70457 -32.21609 -31.87115 -31.21995 -27.90718 -27.34342 -26.80337 -24.73295 -22.98174 -22.51964 -21.35209 -19.21299 -19.06535 -18.40657 -17.72401 -17.38110 -16.86324 -16.78629 -15.98939 -15.68497 -15.32543 -15.02559 -14.71563 -14.48099 -14.38537 -14.09035 -13.72284 -13.57512 -13.36957 -13.27759 -12.91318 -12.75248 -12.59164 -12.17709 -11.97077 -11.88584 -11.71688 -11.63239 -11.54141 -11.34317 -11.22534 -11.02242 -10.95667 -10.82240 -10.61406 -10.17390 -9.58204 -9.51173 -9.36844 -9.18089 -8.96823 -8.30502 -6.22490 -4.27356 0.12568 0.86128 1.18514 1.84678 2.14846 2.22450 3.24328 3.29106 3.30373 3.35911 3.65194 4.13645 4.20086 4.30874 4.40645 4.47368 4.73732 4.74976 4.85160 4.89541 4.95084 5.11086 5.14663 5.16904 5.27053 5.35675 5.43744 5.54302 5.61047 5.78762 5.83699 5.96780 6.03736 6.08641 6.24089 6.34552 6.47502 6.59949 7.20559 7.26276 7.41715 7.71134 7.74994 8.10971 8.76234 9.37933 10.87773 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010572 B = 0.002952 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2647.776219 B = 9482.453645 C =11208.297233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.151 4.151 3 C -0.112 4.112 4 C 0.105 3.895 5 O -0.347 6.347 6 C 0.513 3.487 7 O -0.501 6.501 8 C -0.083 4.083 9 C -0.080 4.080 10 C -0.032 4.032 11 C -0.637 4.637 12 S 2.689 3.311 13 O -0.975 6.975 14 O -0.956 6.956 15 N -1.100 6.100 16 C 0.245 3.755 17 C -0.531 4.531 18 H 0.066 0.934 19 C 0.062 3.938 20 N -0.890 5.890 21 Si 0.904 3.096 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.025 4.025 26 C -0.082 4.082 27 H 0.102 0.898 28 H 0.112 0.888 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.145 0.855 35 H 0.150 0.850 36 H 0.412 0.588 37 H 0.022 0.978 38 H 0.040 0.960 39 H 0.267 0.733 40 H 0.154 0.846 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.875 11.197 -9.136 18.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 C -0.169 4.169 4 C 0.032 3.968 5 O -0.264 6.264 6 C 0.357 3.643 7 O -0.390 6.390 8 C -0.084 4.084 9 C -0.099 4.099 10 C -0.051 4.051 11 C -0.721 4.721 12 S 2.775 3.225 13 O -0.965 6.965 14 O -0.946 6.946 15 N -0.863 5.863 16 C 0.122 3.878 17 C -0.571 4.571 18 H 0.084 0.916 19 C -0.141 4.141 20 N -0.528 5.528 21 Si 0.731 3.269 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.044 4.044 26 C -0.101 4.101 27 H 0.120 0.880 28 H 0.130 0.870 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.162 0.838 35 H 0.168 0.832 36 H 0.247 0.753 37 H 0.040 0.960 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.171 0.829 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 11.781 11.162 -9.860 18.990 hybrid contribution 0.396 0.010 1.457 1.510 sum 12.178 11.172 -8.403 18.540 Atomic orbital electron populations 1.23805 0.95306 1.02818 0.98324 1.21538 0.96000 0.93696 1.03843 1.20727 0.99949 0.93556 1.02636 1.21829 0.90014 0.81887 1.03060 1.86503 1.40949 1.14824 1.84080 1.21175 0.87208 0.83179 0.72697 1.90836 1.15992 1.86705 1.45434 1.19339 0.93222 0.91059 1.04771 1.21321 1.01068 0.90387 0.97089 1.20891 0.91160 0.99919 0.93083 1.31649 1.10185 1.18212 1.12051 1.02042 0.73765 0.73150 0.73533 1.93542 1.73304 1.51873 1.77772 1.93583 1.41235 1.82558 1.77228 1.55442 1.70833 1.29721 1.30312 1.19126 0.91050 0.87828 0.89819 1.21138 1.35926 0.96987 1.03049 0.91594 1.24962 0.95586 0.94959 0.98612 1.69918 1.39129 1.08341 1.35379 0.86467 0.78918 0.79373 0.82131 1.20089 1.21101 1.19983 1.21069 1.01390 0.90391 0.91578 1.21575 0.91750 1.00306 0.96486 0.88003 0.87028 0.91825 0.91061 0.91003 0.89916 0.90004 0.83762 0.83231 0.75290 0.95970 0.94193 0.92351 0.82878 0.83603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 13.71 29.01 0.40 -1.01 16 2 C -0.15 -1.24 6.05 -101.07 -0.61 -1.86 16 3 C -0.11 -0.66 10.05 36.01 0.36 -0.29 16 4 C 0.11 1.00 5.80 36.01 0.21 1.21 16 5 O -0.35 -4.01 7.86 -40.54 -0.32 -4.33 16 6 C 0.51 6.73 7.90 34.61 0.27 7.00 16 7 O -0.50 -7.36 16.14 -19.24 -0.31 -7.67 16 8 C -0.08 -1.10 5.87 -104.98 -0.62 -1.72 16 9 C -0.08 -1.04 9.60 -39.17 -0.38 -1.41 16 10 C -0.03 -0.43 9.50 -39.64 -0.38 -0.81 16 11 C -0.64 -9.80 5.95 -39.49 -0.24 -10.04 16 12 S 2.69 46.68 5.74 -107.50 -0.62 46.06 16 13 O -0.97 -17.62 17.27 -57.17 -0.99 -18.60 16 14 O -0.96 -19.21 16.73 -57.17 -0.96 -20.17 16 15 N -1.10 -20.92 5.99 -11.65 -0.07 -20.99 16 16 C 0.24 5.75 5.98 -5.19 -0.03 5.72 16 17 C -0.53 -13.76 9.27 -34.44 -0.32 -14.08 16 18 H 0.07 1.63 7.65 -52.49 -0.40 1.23 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -24.65 13.29 55.43 0.74 -23.91 16 21 Si 0.90 20.36 29.54 -169.99 -5.02 15.33 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 C -0.03 -0.37 9.50 -39.64 -0.38 -0.75 16 26 C -0.08 -1.08 9.62 -39.17 -0.38 -1.45 16 27 H 0.10 0.71 8.05 -52.49 -0.42 0.29 16 28 H 0.11 1.05 6.82 -52.48 -0.36 0.69 16 29 H 0.06 0.32 8.00 -51.93 -0.42 -0.09 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.14 1.63 7.65 -52.48 -0.40 1.23 16 35 H 0.15 1.76 7.60 -52.49 -0.40 1.36 16 36 H 0.41 7.12 8.54 -34.47 -0.29 6.83 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.04 1.01 7.75 -51.93 -0.40 0.61 16 39 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.15 2.19 7.60 -52.49 -0.40 1.79 16 41 H 0.15 1.57 7.61 -52.49 -0.40 1.17 16 LS Contribution 374.41 15.07 5.64 5.64 Total: -1.00 -32.35 374.41 -9.22 -41.56 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -5.14 Total: 5.01 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -2.17 Total: -17.93 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.67 Total: -44.90 kcal Atomic # 8 Polarization: -48.20 SS G_CDS: -2.57 Total: -50.77 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 46.68 SS G_CDS: -0.62 Total: 46.06 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.35 -9.22 -41.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032842610.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.341 kcal (2) G-P(sol) polarization free energy of solvation -32.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.97 seconds