Wall clock time and date at job start Tue Mar 31 2020 06:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50700 * 119.99897 * 2 1 4 4 C 1.50703 * 119.99883 * 179.97438 * 2 1 3 5 5 O 1.45195 * 109.47074 * 0.02562 * 4 2 1 6 6 C 1.34717 * 116.99524 * 179.97438 * 5 4 2 7 7 O 1.21462 * 120.00170 * 359.97438 * 6 5 4 8 8 C 1.47729 * 119.99714 * 180.02562 * 6 5 4 9 9 C 1.39622 * 120.15060 * 180.02562 * 8 6 5 10 10 C 1.37945 * 119.84969 * 180.02562 * 9 8 6 11 11 C 1.38365 * 120.15161 * 0.02562 * 10 9 8 12 12 S 1.76197 * 119.85065 * 179.97438 * 11 10 9 13 13 O 1.42100 * 106.39925 * 336.45651 * 12 11 10 14 14 O 1.42103 * 106.39966 * 203.53767 * 12 11 10 15 15 N 1.65597 * 107.21750 * 89.99747 * 12 11 10 16 16 C 1.46506 * 120.00079 * 65.00357 * 15 12 11 17 17 C 1.50699 * 109.47214 * 164.72113 * 16 15 12 18 18 H 1.07997 * 119.99775 * 359.97438 * 17 16 15 19 19 C 1.37872 * 119.99959 * 179.97438 * 17 16 15 20 20 N 1.31519 * 120.00023 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00046 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46915 * 60.00523 * 21 19 17 23 23 H 1.48506 * 109.46921 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47393 * 300.00333 * 21 19 17 25 25 C 1.38370 * 120.29814 * 0.23362 * 11 10 9 26 26 C 1.37943 * 120.15314 * 359.48790 * 25 11 10 27 27 H 1.07991 * 119.99852 * 0.02562 * 1 2 3 28 28 H 1.08004 * 119.99696 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47126 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.46858 * 299.99513 * 3 2 1 31 31 H 1.08997 * 109.47088 * 59.99704 * 3 2 1 32 32 H 1.09002 * 109.46933 * 240.00185 * 4 2 1 33 33 H 1.08998 * 109.46646 * 120.00746 * 4 2 1 34 34 H 1.08004 * 120.07280 * 359.97438 * 9 8 6 35 35 H 1.08001 * 119.92448 * 179.97438 * 10 9 8 36 36 H 0.97005 * 120.00050 * 244.72378 * 15 12 11 37 37 H 1.08999 * 109.46682 * 284.72550 * 16 15 12 38 38 H 1.09000 * 109.47243 * 44.71866 * 16 15 12 39 39 H 0.97001 * 120.00013 * 179.97438 * 20 19 17 40 40 H 1.07998 * 119.92018 * 179.72619 * 25 11 10 41 41 H 1.07998 * 120.07644 * 180.25923 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 8 1.1200 -2.4087 0.0005 6 6 1.6350 -3.6536 0.0004 7 8 2.8391 -3.8127 0.0000 8 6 0.7351 -4.8251 -0.0003 9 6 1.2653 -6.1167 0.0002 10 6 0.4193 -7.2063 -0.0010 11 6 -0.9519 -7.0214 -0.0032 12 16 -2.0253 -8.4188 -0.0054 13 8 -1.2777 -9.4980 -0.5490 14 8 -3.2599 -7.9755 -0.5517 15 7 -2.3264 -8.8080 1.5758 16 6 -3.0599 -7.8736 2.4333 17 6 -3.5257 -8.5906 3.6743 18 1 -3.2986 -9.6376 3.8103 19 6 -4.2419 -7.9099 4.6358 20 7 -4.5189 -6.6350 4.4698 21 14 -4.8200 -8.7987 6.1737 22 1 -3.6446 -9.3290 6.9103 23 1 -5.5634 -7.8515 7.0430 24 1 -5.7121 -9.9223 5.7903 25 6 -1.4841 -5.7442 -0.0091 26 6 -0.6497 -4.6458 -0.0021 27 1 -0.5399 0.9352 -0.0004 28 1 -0.5400 -0.9354 -0.0004 29 1 3.1352 1.1060 0.0005 30 1 1.8002 1.8766 -0.8900 31 1 1.8001 1.8767 0.8899 32 1 2.6902 -1.3625 0.8906 33 1 2.6902 -1.3632 -0.8893 34 1 2.3355 -6.2624 0.0006 35 1 0.8282 -8.2059 -0.0010 36 1 -2.0207 -9.6565 1.9331 37 1 -2.4056 -7.0484 2.7144 38 1 -3.9228 -7.4851 1.8926 39 1 -5.0231 -6.1561 5.1462 40 1 -2.5554 -5.6070 -0.0152 41 1 -1.0664 -3.6495 -0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032842610.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:44 Heat of formation + Delta-G solvation = -139.422393 kcal Electronic energy + Delta-G solvation = -26234.181250 eV Core-core repulsion = 22205.852681 eV Total energy + Delta-G solvation = -4028.328569 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.89595 -40.04404 -38.33248 -38.16659 -36.95849 -36.47279 -36.00835 -34.12178 -32.98082 -32.30863 -28.72016 -28.57388 -27.99818 -25.79312 -24.51537 -23.97533 -22.39949 -20.62603 -19.79665 -19.48152 -19.21693 -18.73229 -17.92692 -17.72330 -17.66811 -17.21850 -16.57965 -16.17691 -15.95801 -15.69117 -15.23579 -15.19104 -14.91641 -14.71874 -14.59654 -14.26499 -14.15266 -14.02040 -13.73305 -13.58312 -13.49610 -13.23297 -13.13831 -12.72870 -12.57567 -12.56081 -12.45904 -12.21883 -12.15705 -12.09618 -12.06735 -11.78346 -11.42836 -10.85098 -10.70006 -10.26440 -10.11772 -10.00181 -8.23369 -6.34754 -1.01462 -0.54753 0.10466 1.06969 1.20851 1.30163 1.46689 1.48411 1.56035 2.06232 2.36663 2.44193 2.75091 3.11913 3.25999 3.29010 3.63571 3.70591 3.71860 4.08251 4.12994 4.17032 4.18876 4.23620 4.39104 4.60609 4.63699 4.75292 4.76413 4.83864 4.85364 4.91696 4.98001 5.11716 5.19604 5.29174 5.32790 5.51164 5.60451 5.75974 5.83071 5.98904 6.31903 6.42523 6.78918 7.34700 8.87274 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010572 B = 0.002952 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2647.776219 B = 9482.453645 C =11208.297233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.151 4.151 3 C -0.110 4.110 4 C 0.097 3.903 5 O -0.347 6.347 6 C 0.518 3.482 7 O -0.518 6.518 8 C -0.086 4.086 9 C -0.077 4.077 10 C -0.032 4.032 11 C -0.646 4.646 12 S 2.709 3.291 13 O -0.979 6.979 14 O -0.987 6.987 15 N -1.100 6.100 16 C 0.257 3.743 17 C -0.550 4.550 18 H 0.074 0.926 19 C 0.010 3.990 20 N -0.924 5.924 21 Si 0.969 3.031 22 H -0.266 1.266 23 H -0.284 1.284 24 H -0.269 1.269 25 C -0.041 4.041 26 C -0.078 4.078 27 H 0.117 0.883 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.164 0.836 35 H 0.170 0.830 36 H 0.420 0.580 37 H 0.014 0.986 38 H 0.016 0.984 39 H 0.268 0.732 40 H 0.150 0.850 41 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.125 11.595 -8.797 19.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.151 4.151 3 C -0.167 4.167 4 C 0.025 3.975 5 O -0.264 6.264 6 C 0.363 3.637 7 O -0.408 6.408 8 C -0.087 4.087 9 C -0.095 4.095 10 C -0.051 4.051 11 C -0.734 4.734 12 S 2.799 3.201 13 O -0.969 6.969 14 O -0.977 6.977 15 N -0.862 5.862 16 C 0.132 3.868 17 C -0.590 4.590 18 H 0.093 0.907 19 C -0.190 4.190 20 N -0.562 5.562 21 Si 0.793 3.207 22 H -0.191 1.191 23 H -0.210 1.210 24 H -0.194 1.194 25 C -0.060 4.060 26 C -0.097 4.097 27 H 0.135 0.865 28 H 0.117 0.883 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.182 0.818 35 H 0.187 0.813 36 H 0.256 0.744 37 H 0.032 0.968 38 H 0.034 0.966 39 H 0.077 0.923 40 H 0.168 0.832 41 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 13.013 11.517 -9.526 19.818 hybrid contribution 0.095 -0.032 1.275 1.279 sum 13.109 11.484 -8.252 19.283 Atomic orbital electron populations 1.23889 0.95600 1.03009 0.99025 1.21745 0.96073 0.94023 1.03298 1.20775 1.00144 0.92299 1.03472 1.22094 0.90100 0.81708 1.03632 1.86505 1.41538 1.14740 1.83570 1.21078 0.86792 0.83568 0.72281 1.90827 1.16556 1.87011 1.46379 1.19529 0.93379 0.91594 1.04241 1.21563 1.01991 0.89956 0.96020 1.21154 0.90355 1.01240 0.92380 1.31248 1.10576 1.17230 1.14311 1.01187 0.73252 0.73204 0.72430 1.93529 1.73203 1.52720 1.77469 1.93540 1.43480 1.83114 1.77610 1.55255 1.70924 1.29733 1.30333 1.18715 0.90385 0.88153 0.89508 1.21595 1.35831 0.97645 1.03896 0.90741 1.25835 0.95750 0.95666 1.01757 1.70032 1.39973 1.09764 1.36480 0.85443 0.78632 0.78200 0.78398 1.19092 1.20958 1.19450 1.21170 1.01652 0.90811 0.92374 1.21747 0.91632 1.00733 0.95547 0.86532 0.88299 0.91016 0.90031 0.90281 0.89602 0.89233 0.81821 0.81292 0.74396 0.96774 0.96562 0.92278 0.83228 0.81611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.85 13.71 67.78 0.93 -1.92 16 2 C -0.15 -2.28 6.05 -16.49 -0.10 -2.38 16 3 C -0.11 -1.06 10.05 71.24 0.72 -0.35 16 4 C 0.10 1.72 5.80 71.24 0.41 2.14 16 5 O -0.35 -7.65 7.86 -56.27 -0.44 -8.09 16 6 C 0.52 12.91 7.90 70.33 0.56 13.47 16 7 O -0.52 -14.45 16.14 19.96 0.32 -14.13 16 8 C -0.09 -2.19 5.87 -20.10 -0.12 -2.30 16 9 C -0.08 -1.86 9.60 22.53 0.22 -1.64 16 10 C -0.03 -0.84 9.50 22.23 0.21 -0.63 16 11 C -0.65 -19.66 5.95 22.33 0.13 -19.53 16 12 S 2.71 94.33 5.74 -56.49 -0.32 94.01 16 13 O -0.98 -34.64 17.27 -128.00 -2.21 -36.85 16 14 O -0.99 -40.55 16.73 -128.00 -2.14 -42.69 16 15 N -1.10 -42.05 5.99 -190.78 -1.14 -43.19 16 16 C 0.26 12.29 5.98 85.63 0.51 12.81 16 17 C -0.55 -28.56 9.27 25.60 0.24 -28.32 16 18 H 0.07 3.63 7.65 -2.91 -0.02 3.61 16 19 C 0.01 0.54 5.46 84.65 0.46 1.00 16 20 N -0.92 -51.70 13.29 21.45 0.28 -51.42 16 21 Si 0.97 41.38 29.54 68.60 2.03 43.41 16 22 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 23 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 24 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 25 C -0.04 -1.21 9.50 22.23 0.21 -1.00 16 26 C -0.08 -1.98 9.62 22.54 0.22 -1.76 16 27 H 0.12 1.47 8.05 -2.92 -0.02 1.44 16 28 H 0.10 1.81 6.82 -2.91 -0.02 1.79 16 29 H 0.07 0.58 8.00 -2.39 -0.02 0.56 16 30 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.16 3.32 7.65 -2.91 -0.02 3.29 16 35 H 0.17 3.64 7.60 -2.91 -0.02 3.62 16 36 H 0.42 14.39 8.54 -96.74 -0.83 13.57 16 37 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.02 0.86 7.75 -2.39 -0.02 0.84 16 39 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 40 H 0.15 4.45 7.60 -2.91 -0.02 4.42 16 41 H 0.17 3.43 7.61 -2.91 -0.02 3.41 16 Total: -1.00 -67.73 374.41 1.21 -66.53 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.24 Total: 22.85 kcal Atomic # 6 Polarization: -35.01 SS G_CDS: 4.60 Total: -30.41 kcal Atomic # 7 Polarization: -93.75 SS G_CDS: -0.86 Total: -94.61 kcal Atomic # 8 Polarization: -97.29 SS G_CDS: -4.47 Total: -101.77 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Atomic # 16 Polarization: 94.33 SS G_CDS: -0.32 Total: 94.01 kcal Total: -67.73 1.21 -66.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032842610.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.895 kcal (2) G-P(sol) polarization free energy of solvation -67.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds