Wall clock time and date at job start Tue Mar 31 2020 05:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35952 * 116.99545 * 2 1 4 4 C 1.38030 * 120.00099 * 0.23497 * 3 2 1 5 5 C 1.40065 * 119.83148 * 180.20340 * 4 3 2 6 6 C 1.46826 * 120.07969 * 179.81353 * 5 4 3 7 7 C 1.35335 * 120.00113 * 316.31317 * 6 5 4 8 8 C 1.41718 * 119.99955 * 348.27165 * 7 6 5 9 9 O 1.21770 * 120.00291 * 353.42184 * 8 7 6 10 10 C 1.47928 * 120.00047 * 173.41720 * 8 7 6 11 11 C 1.39607 * 120.14581 * 179.97438 * 10 8 7 12 12 C 1.37939 * 119.84821 * 179.97438 * 11 10 8 13 13 C 1.38380 * 120.14742 * 0.25333 * 12 11 10 14 14 C 1.50701 * 119.85285 * 179.71881 * 13 12 11 15 15 C 1.38379 * 120.29663 * 359.49640 * 13 12 11 16 16 C 1.37946 * 120.14453 * 0.49853 * 15 13 12 17 17 C 1.40120 * 119.83447 * 359.54253 * 5 4 3 18 18 C 1.37598 * 119.99424 * 0.25161 * 17 5 4 19 19 C 1.39106 * 120.16753 * 359.97438 * 18 17 5 20 20 O 1.35576 * 119.91520 * 180.02562 * 19 18 17 21 21 C 1.34733 * 117.00088 * 354.36026 * 20 19 18 22 22 H 1.07994 * 119.99971 * 5.06075 * 21 20 19 23 23 C 1.38750 * 119.99872 * 185.06106 * 21 20 19 24 24 N 1.31495 * 120.00234 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99946 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47200 * 89.99767 * 25 23 21 27 27 H 1.48498 * 109.47169 * 210.00128 * 25 23 21 28 28 H 1.48501 * 109.47092 * 329.99580 * 25 23 21 29 29 H 1.08998 * 109.47099 * 299.99791 * 1 2 3 30 30 H 1.08996 * 109.47410 * 59.99924 * 1 2 3 31 31 H 1.09001 * 109.47224 * 180.02562 * 1 2 3 32 32 H 1.07996 * 120.08039 * 0.02562 * 4 3 2 33 33 H 1.08000 * 119.99725 * 136.31721 * 6 5 4 34 34 H 1.07997 * 119.99751 * 168.26992 * 7 6 5 35 35 H 1.07995 * 120.07667 * 359.96170 * 11 10 8 36 36 H 1.07998 * 119.92872 * 179.97438 * 12 11 10 37 37 H 1.08993 * 109.46801 * 90.00447 * 14 13 12 38 38 H 1.09000 * 109.47376 * 210.00656 * 14 13 12 39 39 H 1.09001 * 109.46919 * 330.00623 * 14 13 12 40 40 H 1.08000 * 119.92821 * 180.23282 * 15 13 12 41 41 H 1.08001 * 120.07549 * 179.72728 * 16 15 13 42 42 H 1.08001 * 120.00219 * 180.22756 * 17 5 4 43 43 H 1.07998 * 119.91558 * 180.02562 * 18 17 5 44 44 H 0.96998 * 120.00236 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2943 2.3690 0.0049 5 6 1.9337 3.6151 0.0006 6 6 1.1393 4.8499 0.0016 7 6 0.0574 4.9592 -0.8041 8 6 -0.1687 3.9984 -1.8210 9 8 0.6691 3.1447 -2.0492 10 6 -1.4225 4.0325 -2.6053 11 6 -1.6481 3.0879 -3.6081 12 6 -2.8197 3.1251 -4.3353 13 6 -3.7679 4.0991 -4.0761 14 6 -5.0427 4.1375 -4.8789 15 6 -3.5527 5.0353 -3.0800 16 6 -2.3855 5.0093 -2.3453 17 6 3.3334 3.6804 0.0010 18 6 4.0761 2.5220 0.0004 19 6 3.4409 1.2844 0.0000 20 8 4.1777 0.1463 -0.0001 21 6 5.5130 0.2821 -0.1176 22 1 5.9572 1.2664 -0.1240 23 6 6.3174 -0.8428 -0.2305 24 7 5.7765 -2.0413 -0.2232 25 14 8.1687 -0.6546 -0.3928 26 1 8.7864 -0.6536 0.9577 27 1 8.7137 -1.7859 -1.1856 28 1 8.4779 0.6252 -1.0795 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 0.2157 2.3139 0.0092 33 1 1.4184 5.6710 0.6453 34 1 -0.6336 5.7785 -0.6719 35 1 -0.9070 2.3299 -3.8143 36 1 -2.9954 2.3952 -5.1117 37 1 -5.7999 3.5266 -4.3876 38 1 -5.3961 5.1661 -4.9507 39 1 -4.8540 3.7474 -5.8791 40 1 -4.2984 5.7906 -2.8803 41 1 -2.2169 5.7432 -1.5711 42 1 3.8293 4.6398 0.0014 43 1 5.1548 2.5738 0.0012 44 1 6.3389 -2.8277 -0.3017 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033472622.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:40 Heat of formation + Delta-G solvation = -14.593737 kcal Electronic energy + Delta-G solvation = -28114.685898 eV Core-core repulsion = 24157.585360 eV Total energy + Delta-G solvation = -3957.100538 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.135 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.28219 -39.45116 -38.41486 -37.48436 -36.05479 -33.26709 -32.90627 -32.18648 -31.10266 -29.43577 -28.90645 -27.57401 -26.52338 -25.46811 -23.92623 -22.75654 -21.91692 -21.42573 -20.72528 -18.78784 -18.07147 -17.56310 -16.99001 -16.17334 -15.57513 -15.31861 -15.16073 -15.07393 -14.68117 -14.65407 -14.32910 -14.06859 -13.96384 -13.69807 -13.63892 -13.41727 -13.24562 -13.13824 -12.68549 -12.48487 -12.19195 -12.02153 -11.81916 -11.71494 -11.54172 -11.32377 -11.12227 -11.02594 -10.94029 -10.60431 -10.47914 -10.33083 -9.51076 -9.36956 -9.20811 -9.12664 -8.81086 -8.71495 -7.54679 -6.77870 -6.48183 -3.99643 0.47639 1.23899 1.28781 2.34838 2.52677 3.12006 3.13152 3.18196 3.20937 3.91620 3.94116 4.11210 4.32990 4.57635 4.58695 4.63196 4.81485 5.00835 5.03584 5.14481 5.19899 5.25590 5.27420 5.37847 5.46607 5.52303 5.56496 5.65030 5.69978 5.72868 5.77136 5.83399 5.86748 5.92560 6.15082 6.22708 6.28254 6.34678 6.36360 6.51068 6.61124 6.67983 6.78596 6.99413 7.15594 7.23977 7.36757 7.66032 7.93517 7.98820 8.25715 8.95564 9.67915 10.68457 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.018247 B = 0.002610 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.142628 B =10725.961775 C =11275.043242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.304 6.304 3 C 0.050 3.950 4 C -0.090 4.090 5 C -0.166 4.166 6 C 0.041 3.959 7 C -0.292 4.292 8 C 0.405 3.595 9 O -0.430 6.430 10 C -0.155 4.155 11 C -0.064 4.064 12 C -0.133 4.133 13 C -0.069 4.069 14 C -0.117 4.117 15 C -0.136 4.136 16 C -0.076 4.076 17 C -0.059 4.059 18 C -0.232 4.232 19 C 0.153 3.847 20 O -0.153 6.153 21 C -0.389 4.389 22 H 0.095 0.905 23 C 0.040 3.960 24 N -0.850 5.850 25 Si 0.943 3.057 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.266 1.266 29 H 0.042 0.958 30 H 0.046 0.954 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.133 0.867 36 H 0.125 0.875 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.124 0.876 41 H 0.130 0.870 42 H 0.110 0.890 43 H 0.134 0.866 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.684 14.221 -3.926 23.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.218 6.218 3 C 0.005 3.995 4 C -0.110 4.110 5 C -0.167 4.167 6 C 0.023 3.977 7 C -0.311 4.311 8 C 0.287 3.713 9 O -0.308 6.308 10 C -0.156 4.156 11 C -0.083 4.083 12 C -0.151 4.151 13 C -0.069 4.069 14 C -0.174 4.174 15 C -0.154 4.154 16 C -0.094 4.094 17 C -0.078 4.078 18 C -0.252 4.252 19 C 0.097 3.903 20 O -0.055 6.055 21 C -0.465 4.465 22 H 0.113 0.887 23 C -0.166 4.166 24 N -0.483 5.483 25 Si 0.767 3.233 26 H -0.198 1.198 27 H -0.202 1.202 28 H -0.190 1.190 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.129 0.871 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.151 0.849 36 H 0.143 0.857 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.142 0.858 41 H 0.148 0.852 42 H 0.128 0.872 43 H 0.152 0.848 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.127 13.050 -4.056 21.911 hybrid contribution 0.461 0.476 -0.161 0.682 sum -16.666 13.526 -4.217 21.875 Atomic orbital electron populations 1.22848 0.80562 1.02690 1.00161 1.86210 1.19250 1.26430 1.89891 1.17979 0.89289 0.84457 1.07769 1.20540 0.97645 0.90689 1.02113 1.18085 0.92822 0.91454 1.14373 1.22568 0.90034 0.94274 0.90861 1.22208 1.02699 1.04471 1.01696 1.19188 0.84997 0.83710 0.83451 1.90861 1.43196 1.33258 1.63496 1.20793 0.97404 0.97946 0.99476 1.21430 0.96649 0.97164 0.93013 1.21038 0.94052 0.99123 1.00899 1.20130 0.96094 0.94754 0.95908 1.20845 0.94525 1.02681 0.99329 1.20993 0.97866 0.99716 0.96844 1.21422 0.92767 0.97016 0.98197 1.20711 0.92083 0.97163 0.97816 1.20715 1.00406 0.90810 1.13261 1.18854 0.88209 0.87588 0.95653 1.83971 1.19563 1.25848 1.76096 1.21476 0.78569 0.94914 1.51507 0.88725 1.25375 1.00671 0.94194 0.96377 1.70042 1.36386 0.97729 1.44115 0.85679 0.80274 0.78573 0.78735 1.19756 1.20165 1.19031 0.93928 0.93570 0.89184 0.87113 0.85944 0.85746 0.84880 0.85719 0.90934 0.91424 0.91382 0.85806 0.85177 0.87204 0.84838 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.81 101.05 0.99 1.56 16 2 O -0.30 -7.14 10.28 -34.20 -0.35 -7.49 16 3 C 0.05 1.18 6.70 -39.12 -0.26 0.92 16 4 C -0.09 -1.82 5.63 -38.97 -0.22 -2.04 16 5 C -0.17 -3.06 4.49 -105.03 -0.47 -3.53 16 6 C 0.04 0.58 9.80 -37.15 -0.36 0.21 16 7 C -0.29 -3.78 9.22 -39.29 -0.36 -4.14 16 8 C 0.40 6.19 5.98 -34.29 -0.20 5.98 16 9 O -0.43 -8.30 12.06 5.13 0.06 -8.24 16 10 C -0.16 -2.02 5.88 -104.91 -0.62 -2.64 16 11 C -0.06 -0.83 9.60 -39.18 -0.38 -1.20 16 12 C -0.13 -1.40 9.68 -39.64 -0.38 -1.78 16 13 C -0.07 -0.63 5.89 -104.52 -0.62 -1.25 16 14 C -0.12 -0.74 10.00 36.01 0.36 -0.38 16 15 C -0.14 -1.23 9.68 -39.64 -0.38 -1.61 16 16 C -0.08 -0.78 9.43 -39.18 -0.37 -1.15 16 17 C -0.06 -1.13 9.78 -39.11 -0.38 -1.51 16 18 C -0.23 -5.23 9.14 -39.49 -0.36 -5.59 16 19 C 0.15 3.95 6.67 -38.72 -0.26 3.69 16 20 O -0.15 -4.57 9.52 -13.75 -0.13 -4.70 16 21 C -0.39 -11.05 9.48 30.92 0.29 -10.76 16 22 H 0.10 2.46 5.18 -52.49 -0.27 2.18 16 23 C 0.04 1.10 5.50 -17.51 -0.10 1.01 16 24 N -0.85 -25.27 13.67 55.48 0.76 -24.51 16 25 Si 0.94 20.57 29.55 -169.99 -5.02 15.55 16 26 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 27 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 28 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 29 H 0.04 0.64 7.65 -51.93 -0.40 0.25 16 30 H 0.05 0.76 7.67 -51.93 -0.40 0.36 16 31 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.11 2.03 5.27 -52.49 -0.28 1.75 16 33 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 34 H 0.12 1.18 6.27 -52.49 -0.33 0.85 16 35 H 0.13 1.83 7.65 -52.49 -0.40 1.43 16 36 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 39 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 40 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 41 H 0.13 1.04 6.22 -52.49 -0.33 0.71 16 42 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 43 H 0.13 2.93 5.62 -52.49 -0.29 2.63 16 44 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 373.28 15.07 5.63 5.63 Total: -1.00 -34.50 373.28 -8.35 -42.85 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -5.21 Total: 5.13 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: -4.08 Total: -24.22 kcal Atomic # 7 Polarization: -25.27 SS G_CDS: 0.76 Total: -24.51 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.42 Total: -20.43 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.50 -8.35 -42.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033472622.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.257 kcal (2) G-P(sol) polarization free energy of solvation -34.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds