Wall clock time and date at job start Tue Mar 31 2020 06:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31570 * 1 3 3 Si 1.86799 * 120.00437 * 2 1 4 4 H 1.48497 * 109.47344 * 270.00697 * 3 2 1 5 5 H 1.48505 * 109.46990 * 30.00196 * 3 2 1 6 6 H 1.48501 * 109.47304 * 150.00116 * 3 2 1 7 7 C 1.38620 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99874 * 0.02562 * 7 2 1 9 9 O 1.34818 * 119.99755 * 179.97438 * 7 2 1 10 10 C 1.35655 * 116.99547 * 185.07472 * 9 7 2 11 11 C 1.39082 * 119.91190 * 354.66932 * 10 9 7 12 12 C 1.37718 * 120.08631 * 180.02562 * 11 10 9 13 13 C 1.39828 * 119.91424 * 359.97438 * 12 11 10 14 14 C 1.47335 * 120.08814 * 179.97438 * 13 12 11 15 15 N 1.29875 * 120.00441 * 13.46269 * 14 13 12 16 16 N 1.40102 * 119.99727 * 21.57139 * 15 14 13 17 17 C 1.37991 * 120.00031 * 186.21136 * 16 15 14 18 18 N 1.28948 * 124.82043 * 359.97438 * 17 16 15 19 19 C 1.34725 * 117.88969 * 180.02562 * 18 17 16 20 20 C 1.41135 * 128.73814 * 179.97438 * 19 18 17 21 21 C 1.37178 * 120.43501 * 179.97438 * 20 19 18 22 22 C 1.38732 * 120.60235 * 0.02562 * 21 20 19 23 23 C 1.37715 * 119.98553 * 359.97438 * 22 21 20 24 24 C 1.39266 * 120.20751 * 0.03959 * 23 22 21 25 25 S 1.75806 * 124.82186 * 179.97438 * 17 16 15 26 26 C 1.39827 * 119.81682 * 0.24591 * 13 12 11 27 27 C 1.37713 * 119.91355 * 359.54299 * 26 13 12 28 28 H 0.96999 * 120.00217 * 359.97438 * 1 2 3 29 29 H 1.07992 * 119.95723 * 0.02562 * 11 10 9 30 30 H 1.08002 * 120.04342 * 179.97438 * 12 11 10 31 31 H 1.08004 * 119.99549 * 193.45958 * 14 13 12 32 32 H 0.97005 * 120.00113 * 6.20551 * 16 15 14 33 33 H 1.07999 * 119.78377 * 359.97438 * 20 19 18 34 34 H 1.08001 * 119.69994 * 179.72490 * 21 20 19 35 35 H 1.07996 * 120.00880 * 179.97438 * 22 21 20 36 36 H 1.07998 * 119.89533 * 179.97438 * 23 22 21 37 37 H 1.08006 * 120.04035 * 179.72399 * 26 13 12 38 38 H 1.08002 * 119.95326 * 180.23095 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4972 2.0464 -1.4000 5 1 1.4473 2.6526 0.7001 6 1 3.5474 1.4400 0.7000 7 6 2.0088 -1.2005 -0.0005 8 1 1.4687 -2.1358 -0.0014 9 8 3.3570 -1.2005 -0.0011 10 6 3.9727 -2.4045 -0.1085 11 6 3.2180 -3.5727 -0.0998 12 6 3.8394 -4.7969 -0.2081 13 6 5.2310 -4.8644 -0.3275 14 6 5.8998 -6.1721 -0.4430 15 7 5.2025 -7.2381 -0.6964 16 7 3.9411 -7.1240 -1.2953 17 6 3.1462 -8.2416 -1.4478 18 7 3.4706 -9.4325 -1.0746 19 6 2.5853 -10.4244 -1.2927 20 6 2.7014 -11.7960 -0.9813 21 6 1.6840 -12.6655 -1.2823 22 6 0.5261 -12.2119 -1.8974 23 6 0.3905 -10.8777 -2.2106 24 6 1.4132 -9.9806 -1.9128 25 16 1.5472 -8.2440 -2.1786 26 6 5.9864 -3.6878 -0.3312 27 6 5.3571 -2.4673 -0.2268 28 1 -0.4850 0.8400 0.0004 29 1 2.1433 -3.5197 -0.0079 30 1 3.2527 -5.7036 -0.2008 31 1 6.9701 -6.2442 -0.3170 32 1 3.6266 -6.2594 -1.6028 33 1 3.5972 -12.1636 -0.5028 34 1 1.7872 -13.7135 -1.0427 35 1 -0.2687 -12.9049 -2.1304 36 1 -0.5113 -10.5262 -2.6898 37 1 7.0618 -3.7359 -0.4187 38 1 5.9396 -1.5579 -0.2334 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033730848.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:55 Heat of formation + Delta-G solvation = 126.708207 kcal Electronic energy + Delta-G solvation = -24350.017945 eV Core-core repulsion = 20672.831335 eV Total energy + Delta-G solvation = -3677.186609 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 339.078 amu Computer time = 3.01 seconds Orbital eigenvalues (eV) -40.22836 -39.67181 -38.32078 -36.96583 -35.67736 -32.77691 -32.43430 -31.12758 -30.64819 -29.31742 -28.66280 -25.65467 -24.51833 -23.22761 -22.63624 -22.27537 -21.35461 -20.12992 -18.83660 -18.20492 -17.77660 -17.18201 -16.82824 -15.93000 -15.40553 -15.33720 -15.04259 -14.59708 -14.44034 -14.20152 -14.10809 -13.92449 -13.74797 -13.30744 -12.74342 -12.65380 -12.57633 -12.49359 -12.19516 -12.03404 -11.96650 -11.37568 -11.05887 -10.96999 -10.90971 -10.42521 -10.27901 -10.18212 -9.70480 -9.58666 -9.39167 -9.05813 -8.65010 -8.24538 -7.99175 -7.25434 -6.67662 -4.33085 0.43948 0.75373 1.03350 1.23675 1.54793 1.79869 2.32943 2.60125 2.92912 3.07475 3.10980 3.23480 3.66355 4.02232 4.08741 4.23716 4.52662 4.58366 4.81514 4.84093 4.88406 5.05338 5.15026 5.20892 5.23610 5.31347 5.55400 5.72745 5.79051 5.80749 6.02972 6.06647 6.11857 6.23500 6.26986 6.43767 6.59809 6.67986 6.71271 6.88068 6.93125 7.26113 7.51307 7.64109 7.74662 8.20218 8.65013 9.22806 10.38350 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.016245 B = 0.002462 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.140570 B =11371.028128 C =12909.178692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.393 4.393 8 H 0.110 0.890 9 O -0.200 6.200 10 C 0.172 3.828 11 C -0.219 4.219 12 C -0.081 4.081 13 C -0.212 4.212 14 C 0.142 3.858 15 N -0.254 5.254 16 N -0.536 5.536 17 C 0.395 3.605 18 N -0.520 5.520 19 C 0.132 3.868 20 C -0.086 4.086 21 C -0.099 4.099 22 C -0.128 4.128 23 C -0.058 4.058 24 C -0.195 4.195 25 S 0.048 5.952 26 C -0.037 4.037 27 C -0.192 4.192 28 H 0.284 0.716 29 H 0.138 0.862 30 H 0.120 0.880 31 H 0.180 0.820 32 H 0.414 0.586 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.084 -17.411 -4.029 18.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.468 4.468 8 H 0.128 0.872 9 O -0.102 6.102 10 C 0.117 3.883 11 C -0.238 4.238 12 C -0.101 4.101 13 C -0.217 4.217 14 C -0.067 4.067 15 N -0.059 5.059 16 N -0.269 5.269 17 C 0.019 3.981 18 N -0.243 5.243 19 C 0.011 3.989 20 C -0.108 4.108 21 C -0.120 4.120 22 C -0.149 4.149 23 C -0.081 4.081 24 C -0.314 4.314 25 S 0.296 5.704 26 C -0.058 4.058 27 C -0.211 4.211 28 H 0.094 0.906 29 H 0.156 0.844 30 H 0.138 0.862 31 H 0.197 0.803 32 H 0.263 0.737 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.858 -17.299 -4.138 18.438 hybrid contribution -0.116 1.224 0.222 1.250 sum 4.741 -16.074 -3.916 17.211 Atomic orbital electron populations 1.69641 1.05694 1.29109 1.45548 1.24539 0.95102 0.99168 0.95071 0.86147 0.80372 0.81019 0.79246 1.19569 1.20432 1.18173 1.20847 0.76557 0.96955 1.52469 0.87246 1.83545 1.23020 1.26029 1.77631 1.19322 0.91814 0.85335 0.91870 1.21208 1.01435 0.91493 1.09673 1.21411 0.93552 0.97559 0.97614 1.19057 0.93399 0.93288 1.15939 1.25275 0.99018 0.87884 0.94530 1.75256 0.91972 1.26111 1.12594 1.45580 1.16094 1.06683 1.58550 1.23439 0.90799 0.89140 0.94749 1.66307 1.32251 0.97455 1.28306 1.18957 0.88081 0.94081 0.97808 1.20607 0.99940 0.89201 1.01032 1.20900 0.93170 0.99580 0.98322 1.20978 0.98447 0.94710 1.00768 1.20267 0.96618 0.92218 0.99030 1.23452 1.01219 0.96028 1.10734 1.85180 1.15115 1.03990 1.66098 1.20803 0.98692 0.90721 0.95537 1.20224 0.91787 0.98221 1.10871 0.90553 0.84396 0.86226 0.80296 0.73725 0.85029 0.85118 0.85125 0.85526 0.85715 0.85812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.49 13.96 55.48 0.77 -22.72 16 2 C 0.07 1.76 5.49 -17.52 -0.10 1.66 16 3 Si 0.91 20.16 28.61 -169.99 -4.86 15.30 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.39 -10.28 9.94 30.87 0.31 -9.97 16 8 H 0.11 2.92 5.42 -52.49 -0.28 2.64 16 9 O -0.20 -4.83 8.58 0.38 0.00 -4.82 16 10 C 0.17 3.58 6.66 -38.96 -0.26 3.32 16 11 C -0.22 -4.30 9.15 -39.46 -0.36 -4.66 16 12 C -0.08 -1.36 7.89 -39.18 -0.31 -1.67 16 13 C -0.21 -3.16 5.68 -105.01 -0.60 -3.76 16 14 C 0.14 1.84 11.21 -14.68 -0.16 1.67 16 15 N -0.25 -3.89 11.30 32.14 0.36 -3.52 16 16 N -0.54 -8.20 4.56 30.47 0.14 -8.07 16 17 C 0.40 6.20 8.42 -88.88 -0.75 5.45 16 18 N -0.52 -8.64 10.40 -11.15 -0.12 -8.75 16 19 C 0.13 1.92 6.94 -84.90 -0.59 1.33 16 20 C -0.09 -1.01 10.10 -38.87 -0.39 -1.40 16 21 C -0.10 -0.89 9.99 -39.78 -0.40 -1.29 16 22 C -0.13 -1.12 10.05 -39.59 -0.40 -1.51 16 23 C -0.06 -0.62 10.06 -39.39 -0.40 -1.01 16 24 C -0.19 -2.60 6.52 -38.60 -0.25 -2.85 16 25 S 0.05 0.65 23.39 -107.50 -2.51 -1.86 16 26 C -0.04 -0.52 9.78 -39.18 -0.38 -0.91 16 27 C -0.19 -3.28 9.97 -39.46 -0.39 -3.68 16 28 H 0.28 7.10 8.31 -40.82 -0.34 6.77 16 29 H 0.14 2.88 5.61 -52.49 -0.29 2.58 16 30 H 0.12 1.95 5.24 -52.49 -0.28 1.68 16 31 H 0.18 1.61 8.06 -52.48 -0.42 1.19 16 32 H 0.41 6.03 5.62 -182.59 -1.03 5.00 16 33 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 38 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 346.57 15.07 5.22 5.22 Total: -1.00 -30.01 346.57 -10.40 -40.41 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -3.97 Total: 8.11 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -5.43 Total: -19.28 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 1.16 Total: -43.06 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: 0.00 Total: -4.82 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.86 Total: 15.30 kcal Atomic # 16 Polarization: 0.65 SS G_CDS: -2.51 Total: -1.86 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.01 -10.40 -40.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033730848.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.117 kcal (2) G-P(sol) polarization free energy of solvation -30.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.01 seconds