Wall clock time and date at job start Tue Mar 31 2020 05:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35950 * 117.00214 * 2 1 4 4 C 1.38189 * 119.99745 * 359.97438 * 3 2 1 5 5 C 1.39781 * 119.87498 * 179.97438 * 4 3 2 6 6 C 1.47322 * 120.06349 * 179.97438 * 5 4 3 7 7 N 1.29864 * 120.00194 * 189.03063 * 6 5 4 8 8 N 1.40103 * 120.00294 * 15.27632 * 7 6 5 9 9 N 1.40597 * 127.45083 * 50.65102 * 8 7 6 10 10 N 1.28882 * 106.87508 * 179.86646 * 9 8 7 11 11 N 1.28390 * 110.55131 * 0.41114 * 10 9 8 12 12 C 1.31563 * 110.55512 * 359.73062 * 11 10 9 13 13 N 1.38384 * 126.53994 * 179.97438 * 12 11 10 14 14 C 1.39844 * 119.88065 * 359.97438 * 5 4 3 15 15 C 1.37857 * 119.99744 * 0.02562 * 14 5 4 16 16 Cl 1.73590 * 119.93682 * 179.97438 * 15 14 5 17 17 C 1.39086 * 120.12026 * 359.74219 * 15 14 5 18 18 O 1.35696 * 119.93695 * 180.25531 * 17 15 14 19 19 C 1.34782 * 116.99863 * 270.25495 * 18 17 15 20 20 H 1.07998 * 120.00130 * 0.02562 * 19 18 17 21 21 C 1.38644 * 119.99853 * 180.02562 * 19 18 17 22 22 N 1.31563 * 119.99787 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00068 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47283 * 89.99592 * 23 21 19 25 25 H 1.48495 * 109.47132 * 209.99955 * 23 21 19 26 26 H 1.48501 * 109.46847 * 329.99892 * 23 21 19 27 27 H 1.09003 * 109.47617 * 300.00283 * 1 2 3 28 28 H 1.09005 * 109.47031 * 60.00373 * 1 2 3 29 29 H 1.09005 * 109.47285 * 180.02562 * 1 2 3 30 30 H 1.07996 * 120.06283 * 359.97438 * 4 3 2 31 31 H 1.08001 * 119.99548 * 9.02348 * 6 5 4 32 32 H 0.96999 * 119.99918 * 179.97438 * 13 12 11 33 33 H 0.97006 * 119.99612 * 0.02562 * 13 12 11 34 34 H 1.07997 * 120.00164 * 179.97438 * 14 5 4 35 35 H 0.97003 * 120.00017 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2935 2.3702 -0.0005 5 6 1.9308 3.6143 0.0000 6 6 1.1325 4.8525 -0.0011 7 7 1.7143 6.0001 -0.1772 8 7 3.0215 6.0532 -0.6784 9 7 3.5244 5.4128 -1.8246 10 7 4.7691 5.7339 -1.9169 11 7 5.1095 6.5025 -0.9464 12 6 4.0823 6.7323 -0.1571 13 7 4.0794 7.5139 0.9849 14 6 3.3277 3.6816 0.0016 15 6 4.0735 2.5222 0.0022 16 17 5.8073 2.6075 0.0035 17 6 3.4393 1.2843 0.0065 18 8 4.1771 0.1455 0.0122 19 6 4.5159 -0.3702 -1.1861 20 1 4.2010 0.1221 -2.0943 21 6 5.2686 -1.5326 -1.2528 22 7 5.6526 -2.1320 -0.1464 23 14 5.7388 -2.2469 -2.9135 24 1 7.0387 -1.6753 -3.3482 25 1 5.8596 -3.7226 -2.8014 26 1 4.6917 -1.9104 -3.9114 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 0.2150 2.3149 -0.0014 31 1 0.0634 4.8057 0.1443 32 1 3.2633 7.6191 1.4985 33 1 4.8934 7.9570 1.2713 34 1 3.8221 4.6417 0.0016 35 1 6.1789 -2.9454 -0.1930 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035189298.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:07 Heat of formation + Delta-G solvation = 175.083689 kcal Electronic energy + Delta-G solvation = -27070.437790 eV Core-core repulsion = 22944.341497 eV Total energy + Delta-G solvation = -4126.096293 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.068 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.00805 -40.12765 -38.05450 -37.39423 -36.06647 -35.69639 -35.16062 -32.44028 -31.86304 -30.56007 -29.95215 -29.34434 -27.11080 -25.39015 -24.57730 -22.97732 -22.39634 -22.07837 -21.03837 -18.67416 -18.19594 -17.47779 -17.36628 -16.94559 -16.60661 -16.41212 -15.81760 -15.43148 -14.93117 -14.50191 -14.12551 -13.81662 -13.70058 -13.55680 -13.20012 -12.68127 -12.64071 -12.26598 -12.06626 -11.95706 -11.62261 -11.48534 -11.44479 -11.31316 -11.04157 -10.85399 -10.49780 -10.42223 -10.33681 -10.17434 -9.85712 -9.49289 -8.85946 -8.27328 -8.23354 -7.72800 -6.06762 -3.77220 0.20268 1.21799 1.30860 1.49569 2.07037 2.49850 2.61744 2.94679 3.29495 3.32556 3.35687 3.60669 3.73612 4.11871 4.27993 4.45974 4.61842 4.79481 4.90435 5.05565 5.14130 5.18691 5.27344 5.30541 5.34795 5.46763 5.59725 5.68991 5.93995 6.15053 6.26108 6.38372 6.48217 6.67720 7.00586 7.29173 7.38524 7.65692 8.27930 8.64581 9.35007 9.92449 11.11856 Molecular weight = 338.07amu Principal moments of inertia in cm(-1) A = 0.013176 B = 0.004703 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.513643 B = 5951.630984 C = 7265.230017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.281 6.281 3 C 0.099 3.901 4 C -0.152 4.152 5 C -0.132 4.132 6 C 0.227 3.773 7 N -0.263 5.263 8 N -0.289 5.289 9 N -0.084 5.084 10 N -0.005 5.005 11 N -0.368 5.368 12 C 0.508 3.492 13 N -0.806 5.806 14 C -0.104 4.104 15 C -0.042 4.042 16 Cl -0.033 7.033 17 C 0.167 3.833 18 O -0.213 6.213 19 C -0.361 4.361 20 H 0.070 0.930 21 C 0.037 3.963 22 N -0.879 5.879 23 Si 0.930 3.070 24 H -0.276 1.276 25 H -0.281 1.281 26 H -0.272 1.272 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.099 0.901 30 H 0.139 0.861 31 H 0.203 0.797 32 H 0.419 0.581 33 H 0.428 0.572 34 H 0.129 0.871 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.195 15.266 4.341 20.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.193 6.193 3 C 0.052 3.948 4 C -0.173 4.173 5 C -0.136 4.136 6 C 0.021 3.979 7 N -0.068 5.068 8 N -0.176 5.176 9 N -0.073 5.073 10 N -0.001 5.001 11 N -0.233 5.233 12 C 0.141 3.859 13 N -0.363 5.363 14 C -0.126 4.126 15 C -0.070 4.070 16 Cl -0.004 7.004 17 C 0.117 3.883 18 O -0.125 6.125 19 C -0.437 4.437 20 H 0.088 0.912 21 C -0.163 4.163 22 N -0.519 5.519 23 Si 0.756 3.244 24 H -0.202 1.202 25 H -0.207 1.207 26 H -0.197 1.197 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.118 0.882 30 H 0.157 0.843 31 H 0.219 0.781 32 H 0.250 0.750 33 H 0.262 0.738 34 H 0.147 0.853 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.184 15.266 3.429 19.232 hybrid contribution -0.528 -0.423 0.158 0.695 sum -11.712 14.843 3.586 19.244 Atomic orbital electron populations 1.23085 0.79608 1.04007 1.00535 1.86403 1.19934 1.24963 1.88046 1.19460 0.91826 0.84810 0.98720 1.21195 0.99790 0.90725 1.05573 1.18754 0.92256 0.92656 1.09907 1.26086 1.00180 0.88318 0.83303 1.76223 0.88717 1.22677 1.19222 1.52871 1.07354 1.37151 1.20194 1.82871 1.05716 1.17411 1.01258 1.77918 1.04139 1.04772 1.13292 1.74984 1.20979 1.22141 1.05164 1.21819 0.83421 0.90530 0.90143 1.41021 1.17443 1.53661 1.24208 1.21658 0.92788 0.98027 1.00160 1.21152 0.86952 0.93253 1.05629 1.98379 1.07072 1.98397 1.96536 1.18553 0.87587 0.88674 0.93453 1.83877 1.66546 1.32531 1.29538 1.20795 1.34020 1.08008 0.80857 0.91206 1.24949 0.97089 0.95922 0.98310 1.70029 1.36991 1.18858 1.26038 0.85892 0.79094 0.78247 0.81194 1.20237 1.20656 1.19705 0.93082 0.92990 0.88239 0.84324 0.78101 0.74991 0.73802 0.85345 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 101.05 0.99 1.27 16 2 O -0.28 -5.44 10.27 -34.22 -0.35 -5.80 16 3 C 0.10 1.92 6.70 -39.13 -0.26 1.65 16 4 C -0.15 -2.15 8.77 -39.02 -0.34 -2.50 16 5 C -0.13 -1.89 5.70 -105.03 -0.60 -2.49 16 6 C 0.23 2.26 11.24 -14.69 -0.17 2.09 16 7 N -0.26 -3.04 11.78 32.14 0.38 -2.67 16 8 N -0.29 -4.20 2.80 30.30 0.08 -4.11 16 9 N -0.08 -1.48 11.30 60.35 0.68 -0.80 16 10 N 0.00 -0.09 13.13 60.35 0.79 0.71 16 11 N -0.37 -6.00 12.11 30.31 0.37 -5.63 16 12 C 0.51 6.84 8.20 -318.92 -2.62 4.23 16 13 N -0.81 -6.58 9.07 30.30 0.27 -6.31 16 14 C -0.10 -1.87 7.23 -39.12 -0.28 -2.15 16 15 C -0.04 -0.90 6.33 -39.41 -0.25 -1.15 16 16 Cl -0.03 -0.74 28.49 -51.86 -1.48 -2.21 16 17 C 0.17 3.90 5.60 -38.79 -0.22 3.69 16 18 O -0.21 -6.06 8.90 -14.28 -0.13 -6.19 16 19 C -0.36 -10.44 9.82 30.88 0.30 -10.14 16 20 H 0.07 1.98 7.75 -52.49 -0.41 1.57 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 22 N -0.88 -26.94 13.67 55.48 0.76 -26.19 16 23 Si 0.93 22.18 29.55 -169.99 -5.02 17.16 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 27 H 0.05 0.48 7.66 -51.93 -0.40 0.09 16 28 H 0.05 0.52 7.66 -51.93 -0.40 0.13 16 29 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.14 1.32 6.28 -52.49 -0.33 0.99 16 31 H 0.20 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.42 2.49 8.95 -40.82 -0.37 2.13 16 33 H 0.43 2.50 8.95 -40.82 -0.37 2.14 16 34 H 0.13 2.25 2.89 -71.94 -0.21 2.04 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 331.95 15.07 5.00 5.00 Total: -1.00 -37.74 331.95 -4.62 -42.37 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: -2.45 Total: -0.82 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -3.54 Total: -4.51 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: 3.34 Total: -45.00 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: -0.48 Total: -11.98 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.48 Total: -2.21 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -37.74 -4.62 -42.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035189298.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.449 kcal (2) G-P(sol) polarization free energy of solvation -37.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 175.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds