Wall clock time and date at job start Tue Mar 31 2020 05:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42899 * 109.47889 * 2 1 4 4 C 1.35903 * 117.00263 * 179.97438 * 3 2 1 5 5 C 1.38915 * 119.97128 * 0.02959 * 4 3 2 6 6 C 1.38304 * 120.29963 * 179.97438 * 5 4 3 7 7 C 1.37919 * 120.23707 * 359.97438 * 6 5 4 8 8 C 1.39893 * 119.93222 * 359.72520 * 7 6 5 9 9 C 1.47128 * 120.14662 * 180.27582 * 8 7 6 10 10 C 1.35041 * 120.00132 * 0.28243 * 9 8 7 11 11 C 1.46258 * 120.00061 * 179.97438 * 10 9 8 12 12 O 1.21775 * 120.00110 * 359.97438 * 11 10 9 13 13 C 1.47656 * 119.99988 * 179.97438 * 11 10 9 14 14 C 1.39818 * 120.07780 * 359.71796 * 13 11 10 15 15 C 1.37630 * 119.92159 * 179.78674 * 14 13 11 16 16 C 1.39175 * 120.07511 * 0.47182 * 15 14 13 17 17 O 1.35561 * 119.91889 * 179.75996 * 16 15 14 18 18 C 1.34767 * 116.99719 * 174.47206 * 17 16 15 19 19 H 1.08001 * 120.00032 * 5.05402 * 18 17 16 20 20 C 1.38756 * 120.00207 * 185.06034 * 18 17 16 21 21 N 1.31490 * 119.99455 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00160 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47347 * 359.97438 * 22 20 18 24 24 H 1.48507 * 109.47024 * 119.99879 * 22 20 18 25 25 H 1.48500 * 109.47406 * 239.99475 * 22 20 18 26 26 C 1.39164 * 120.15775 * 359.78684 * 16 15 14 27 27 C 1.37631 * 120.07702 * 359.97438 * 26 16 15 28 28 C 1.38366 * 119.96674 * 180.02562 * 4 3 2 29 29 H 1.08995 * 109.47714 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46908 * 299.99950 * 1 2 3 31 31 H 1.09003 * 109.47002 * 59.99632 * 1 2 3 32 32 H 1.09004 * 109.46908 * 240.00050 * 2 1 3 33 33 H 1.09003 * 109.47002 * 120.00368 * 2 1 3 34 34 H 1.07998 * 119.84968 * 359.97438 * 5 4 3 35 35 H 1.08003 * 119.87693 * 180.02562 * 6 5 4 36 36 H 1.08002 * 120.03400 * 180.02562 * 7 6 5 37 37 H 1.07995 * 119.99800 * 180.27881 * 9 8 7 38 38 H 1.08005 * 120.00063 * 359.97438 * 10 9 8 39 39 H 1.08003 * 120.03687 * 0.02638 * 14 13 11 40 40 H 1.07997 * 119.96306 * 180.23255 * 15 14 13 41 41 H 0.96996 * 119.99736 * 180.02562 * 21 20 18 42 42 H 1.07995 * 119.96123 * 179.97438 * 26 16 15 43 43 H 1.08003 * 120.03949 * 179.97438 * 27 26 16 44 44 H 1.08000 * 120.11822 * 0.02802 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3538 1.5251 0.0005 5 6 4.1994 0.4230 0.0004 6 6 5.5715 0.5962 0.0005 7 6 6.1114 1.8654 0.0000 8 6 5.2690 2.9822 -0.0062 9 6 5.8398 4.3382 -0.0128 10 6 7.1796 4.5069 -0.0186 11 6 7.7470 5.8549 -0.0257 12 8 7.0112 6.8252 -0.0269 13 6 9.2120 6.0392 -0.0315 14 6 10.0583 4.9263 -0.0242 15 6 11.4234 5.1018 -0.0340 16 6 11.9615 6.3853 -0.0413 17 8 13.3065 6.5545 -0.0461 18 6 13.7639 7.8162 -0.1687 19 1 13.0701 8.6439 -0.1754 20 6 15.1262 8.0520 -0.2865 21 7 15.9709 7.0443 -0.2780 22 14 15.7602 9.8007 -0.4572 23 1 14.6153 10.7463 -0.4397 24 1 16.6742 10.1083 0.6721 25 1 16.4952 9.9379 -1.7402 26 6 11.1222 7.4953 -0.0432 27 6 9.7562 7.3272 -0.0383 28 6 3.8821 2.8040 0.0011 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.7834 -0.5737 0.0004 35 1 6.2226 -0.2655 0.0000 36 1 7.1833 1.9969 -0.0004 37 1 5.1872 5.1988 -0.0131 38 1 7.8322 3.6463 -0.0180 39 1 9.6413 3.9301 -0.0148 40 1 12.0777 4.2426 -0.0322 41 1 16.9232 7.2090 -0.3600 42 1 11.5432 8.4898 -0.0484 43 1 9.1053 8.1891 -0.0393 44 1 3.2255 3.6615 0.0016 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040139700.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:49 Heat of formation + Delta-G solvation = -39.195645 kcal Electronic energy + Delta-G solvation = -26059.419215 eV Core-core repulsion = 22101.251858 eV Total energy + Delta-G solvation = -3958.167357 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.135 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.47061 -39.55463 -38.63998 -37.94867 -36.22909 -33.93144 -32.54392 -32.43337 -30.84370 -30.25996 -29.75648 -28.88976 -25.74763 -25.10739 -23.71675 -22.92055 -22.18732 -21.85166 -20.45979 -19.08765 -18.28767 -17.92418 -17.35790 -16.51996 -16.51791 -16.19017 -15.94333 -15.16937 -14.71210 -14.51655 -14.19631 -14.14082 -13.99673 -13.83640 -13.70868 -13.65865 -13.49095 -13.03056 -12.93333 -12.72435 -12.55457 -12.39855 -12.09946 -11.85090 -11.68413 -11.55583 -11.40261 -11.27102 -11.11495 -10.94580 -10.72051 -10.54035 -10.34488 -9.54398 -9.33380 -9.03562 -8.74381 -8.38129 -8.35510 -7.42629 -6.67922 -4.22987 0.26210 1.15256 1.40465 2.12189 2.17715 2.77778 3.01305 3.04520 3.10492 3.37626 3.67224 3.81031 4.24667 4.40382 4.44412 4.52282 4.56807 4.65063 4.73022 4.77382 4.90606 4.93517 5.01319 5.02638 5.12866 5.20187 5.30667 5.38100 5.49798 5.56219 5.60280 5.63563 5.74998 5.90646 5.96314 6.03510 6.12007 6.14475 6.33833 6.45633 6.47835 6.49526 6.74260 6.89816 6.98590 7.06124 7.21525 7.24280 7.61942 7.78155 8.04403 8.77090 9.43049 10.48549 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.036340 B = 0.001582 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.316161 B =17699.094622 C =18439.364207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.317 6.317 4 C 0.127 3.873 5 C -0.205 4.205 6 C -0.080 4.080 7 C -0.140 4.140 8 C -0.027 4.027 9 C -0.048 4.048 10 C -0.200 4.200 11 C 0.427 3.573 12 O -0.488 6.488 13 C -0.269 4.269 14 C -0.028 4.028 15 C -0.205 4.205 16 C 0.175 3.825 17 O -0.159 6.159 18 C -0.393 4.393 19 H 0.099 0.901 20 C 0.043 3.957 21 N -0.850 5.850 22 Si 0.945 3.055 23 H -0.264 1.264 24 H -0.273 1.273 25 H -0.273 1.273 26 C -0.249 4.249 27 C -0.008 4.008 28 C -0.134 4.134 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.274 0.726 42 H 0.132 0.868 43 H 0.119 0.881 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.059 -14.138 0.373 27.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.231 6.231 4 C 0.082 3.918 5 C -0.223 4.223 6 C -0.098 4.098 7 C -0.159 4.159 8 C -0.027 4.027 9 C -0.066 4.066 10 C -0.218 4.218 11 C 0.313 3.687 12 O -0.370 6.370 13 C -0.271 4.271 14 C -0.046 4.046 15 C -0.224 4.224 16 C 0.118 3.882 17 O -0.060 6.060 18 C -0.469 4.469 19 H 0.116 0.884 20 C -0.164 4.164 21 N -0.482 5.482 22 Si 0.769 3.231 23 H -0.188 1.188 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.268 4.268 27 C -0.026 4.026 28 C -0.152 4.152 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.084 0.916 42 H 0.150 0.850 43 H 0.137 0.863 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -23.096 -13.710 0.374 26.861 hybrid contribution 0.555 0.433 -0.075 0.708 sum -22.542 -13.277 0.299 26.163 Atomic orbital electron populations 1.21781 0.92662 1.02896 1.03640 1.22789 0.95947 0.81942 1.01408 1.86079 1.18947 1.29343 1.88743 1.18826 0.82329 0.93934 0.96754 1.21352 0.94483 0.97957 1.08546 1.20889 0.94221 0.97346 0.97347 1.21408 1.00215 0.91762 1.02467 1.18852 0.92132 0.93137 0.98558 1.22425 0.95711 0.94891 0.93601 1.23744 0.95864 0.99134 1.03081 1.20223 0.88729 0.87829 0.71918 1.90584 1.62950 1.43140 1.40323 1.19675 0.93050 0.94353 1.20066 1.20836 0.92291 0.97138 0.94363 1.20154 0.94573 0.95036 1.12634 1.19653 0.84552 0.93488 0.90507 1.83892 1.15678 1.31333 1.75058 1.21570 0.92126 0.81333 1.51855 0.88353 1.25415 0.94742 1.00354 0.95878 1.70013 1.03389 1.31181 1.43638 0.85573 0.79310 0.79695 0.78505 1.18777 1.19875 1.19867 1.21121 0.93155 0.99449 1.13122 1.20916 0.94242 0.95917 0.91558 1.20603 0.94188 0.95187 1.05269 0.90333 0.91455 0.91446 0.92002 0.92004 0.85517 0.85354 0.85008 0.84767 0.84942 0.86288 0.85922 0.91580 0.84992 0.86318 0.84728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 10.28 37.16 0.38 -0.30 16 2 C 0.05 0.32 5.46 37.16 0.20 0.53 16 3 O -0.32 -2.99 10.13 -19.44 -0.20 -3.19 16 4 C 0.13 1.26 6.68 -39.28 -0.26 1.00 16 5 C -0.20 -1.75 9.04 -39.31 -0.36 -2.10 16 6 C -0.08 -0.68 10.02 -39.67 -0.40 -1.07 16 7 C -0.14 -1.36 9.41 -39.08 -0.37 -1.73 16 8 C -0.03 -0.29 5.87 -105.07 -0.62 -0.91 16 9 C -0.05 -0.58 9.46 -37.11 -0.35 -0.93 16 10 C -0.20 -2.61 8.90 -37.50 -0.33 -2.94 16 11 C 0.43 7.15 7.06 -32.52 -0.23 6.92 16 12 O -0.49 -9.28 16.23 5.12 0.08 -9.19 16 13 C -0.27 -4.88 5.88 -104.87 -0.62 -5.50 16 14 C -0.03 -0.47 9.44 -39.21 -0.37 -0.84 16 15 C -0.20 -4.04 9.97 -39.46 -0.39 -4.44 16 16 C 0.18 4.04 6.66 -38.89 -0.26 3.78 16 17 O -0.16 -4.30 9.74 0.81 0.01 -4.30 16 18 C -0.39 -10.45 9.48 30.92 0.29 -10.16 16 19 H 0.10 2.42 5.18 -52.49 -0.27 2.15 16 20 C 0.04 1.11 5.49 -17.51 -0.10 1.02 16 21 N -0.85 -23.61 13.67 55.48 0.76 -22.85 16 22 Si 0.95 19.52 29.55 -169.99 -5.02 14.50 16 23 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 24 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 25 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 26 C -0.25 -5.32 9.15 -39.46 -0.36 -5.69 16 27 C -0.01 -0.15 9.59 -39.21 -0.38 -0.53 16 28 C -0.13 -1.41 9.73 -38.94 -0.38 -1.79 16 29 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 33 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 34 H 0.13 0.79 6.28 -52.49 -0.33 0.46 16 35 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 36 H 0.13 1.11 6.16 -52.49 -0.32 0.78 16 37 H 0.13 1.64 7.52 -52.49 -0.39 1.24 16 38 H 0.13 1.43 4.33 -52.48 -0.23 1.20 16 39 H 0.12 1.54 6.21 -52.48 -0.33 1.21 16 40 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 41 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.13 2.79 5.62 -52.49 -0.29 2.49 16 43 H 0.12 2.17 7.64 -52.48 -0.40 1.77 16 44 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 379.39 15.07 5.72 5.72 Total: -1.00 -31.13 379.39 -8.58 -39.71 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -5.04 Total: 5.28 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: -4.89 Total: -25.67 kcal Atomic # 7 Polarization: -23.61 SS G_CDS: 0.76 Total: -22.85 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.11 Total: -16.68 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.13 -8.58 -39.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040139700.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.512 kcal (2) G-P(sol) polarization free energy of solvation -31.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds