Wall clock time and date at job start Tue Mar 31 2020 05:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86794 * 120.00461 * 2 1 4 4 H 1.48497 * 109.47574 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47019 * 300.00270 * 3 2 1 6 6 H 1.48502 * 109.46950 * 59.99769 * 3 2 1 7 7 C 1.39893 * 119.99657 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99994 * 197.94813 * 7 2 1 9 9 C 1.41213 * 119.99972 * 17.93885 * 7 2 1 10 10 C 1.40838 * 120.17878 * 24.55261 * 9 7 2 11 11 C 1.36442 * 119.81206 * 180.02562 * 10 9 7 12 12 C 1.39312 * 120.18063 * 359.97438 * 11 10 9 13 13 O 1.35680 * 119.81481 * 179.97438 * 12 11 10 14 14 C 1.42896 * 117.00252 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47341 * 180.02562 * 14 13 12 16 16 H 1.09000 * 109.47273 * 305.00573 * 15 14 13 17 17 O 1.42901 * 109.46998 * 65.00575 * 15 14 13 18 18 C 1.52994 * 109.47416 * 185.00695 * 15 14 13 19 19 N 1.46496 * 109.47374 * 175.00202 * 18 15 14 20 20 C 1.36042 * 126.34632 * 264.99577 * 19 18 15 21 21 N 1.30112 * 110.09650 * 180.02562 * 20 19 18 22 22 C 1.35781 * 109.64662 * 0.02562 * 21 20 19 23 23 C 1.39744 * 133.60023 * 180.02562 * 22 21 20 24 24 C 1.36604 * 119.88394 * 180.02562 * 23 22 21 25 25 C 1.38783 * 120.66948 * 359.97438 * 24 23 22 26 26 C 1.37851 * 120.44835 * 0.24251 * 25 24 23 27 27 C 1.38048 * 126.35054 * 85.00056 * 19 18 15 28 28 C 1.39310 * 120.37081 * 0.25410 * 12 11 10 29 29 C 1.36438 * 120.18256 * 359.48935 * 28 12 11 30 30 H 0.97001 * 119.99528 * 0.02562 * 1 2 3 31 31 H 1.07995 * 120.09225 * 359.97438 * 10 9 7 32 32 H 1.07990 * 119.90591 * 179.97438 * 11 10 9 33 33 H 1.09003 * 109.46521 * 60.00457 * 14 13 12 34 34 H 1.09000 * 109.47558 * 300.00985 * 14 13 12 35 35 H 0.96693 * 114.00389 * 59.99885 * 17 15 14 36 36 H 1.09002 * 109.47647 * 54.99901 * 18 15 14 37 37 H 1.08999 * 109.47129 * 294.99919 * 18 15 14 38 38 H 1.07995 * 124.95581 * 359.96791 * 20 19 18 39 39 H 1.08000 * 120.05816 * 359.97438 * 23 22 21 40 40 H 1.07994 * 119.66639 * 179.97438 * 24 23 22 41 41 H 1.07995 * 119.77299 * 179.97438 * 25 24 23 42 42 H 1.08001 * 120.15256 * 179.67548 * 26 25 24 43 43 H 1.07997 * 119.91006 * 179.72045 * 28 12 11 44 44 H 1.07995 * 120.09621 * 180.25127 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6176 0.0000 4 1 3.7029 1.3463 0.0006 5 1 1.8842 2.3964 -1.2125 6 1 1.8842 2.3963 1.2125 7 6 2.0082 -1.2116 -0.0005 8 1 3.0488 -1.2345 0.2877 9 6 1.3536 -2.4046 -0.3777 10 6 0.2246 -2.3573 -1.2184 11 6 -0.4025 -3.5145 -1.5778 12 6 0.0714 -4.7405 -1.1159 13 8 -0.5582 -5.8867 -1.4775 14 6 -0.0212 -7.1097 -0.9699 15 6 -0.8567 -8.2848 -1.4818 16 1 -1.9031 -8.1279 -1.2202 17 8 -0.7293 -8.3768 -2.9021 18 6 -0.3597 -9.5818 -0.8401 19 7 -1.2333 -10.6889 -1.2367 20 6 -2.2936 -11.1708 -0.5337 21 7 -2.8456 -12.1575 -1.1777 22 6 -2.1761 -12.3765 -2.3385 23 6 -2.3352 -13.2882 -3.3856 24 6 -1.4776 -13.2604 -4.4484 25 6 -0.4460 -12.3336 -4.5016 26 6 -0.2673 -11.4277 -3.4781 27 6 -1.1331 -11.4365 -2.3928 28 6 1.1846 -4.7957 -0.2802 29 6 1.8263 -3.6481 0.0843 30 1 -0.4849 0.8401 -0.0004 31 1 -0.1442 -1.4077 -1.5769 32 1 -1.2685 -3.4800 -2.2220 33 1 -0.0464 -7.0930 0.1197 34 1 1.0089 -7.2223 -1.3078 35 1 0.1773 -8.5169 -3.2075 36 1 -0.3733 -9.4789 0.2449 37 1 0.6582 -9.7850 -1.1730 38 1 -2.6279 -10.7906 0.4202 39 1 -3.1344 -14.0140 -3.3541 40 1 -1.6035 -13.9669 -5.2555 41 1 0.2240 -12.3248 -5.3487 42 1 0.5403 -10.7119 -3.5220 43 1 1.5429 -5.7498 0.0771 44 1 2.6916 -3.6929 0.7289 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040463189.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:36 Heat of formation + Delta-G solvation = 8.698313 kcal Electronic energy + Delta-G solvation = -27310.572194 eV Core-core repulsion = 23386.774426 eV Total energy + Delta-G solvation = -3923.797768 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.35625 -39.22520 -37.92054 -37.33789 -36.20115 -34.19301 -33.40134 -31.42643 -30.19924 -29.56310 -29.47335 -29.02825 -26.41427 -24.72497 -23.47111 -22.75008 -22.25227 -20.89517 -20.80660 -20.56818 -17.92522 -17.52826 -17.43033 -16.89627 -16.62751 -16.17674 -15.98971 -15.71471 -15.21533 -14.58516 -14.46737 -14.23025 -14.01831 -14.00308 -13.82405 -13.74813 -12.96962 -12.63987 -12.41320 -12.24815 -12.17258 -12.05109 -11.91605 -11.69348 -11.57507 -11.27121 -11.19976 -10.99205 -10.76734 -10.65712 -10.24026 -10.13211 -10.06552 -9.89656 -9.42961 -9.09585 -8.54072 -8.28750 -7.73207 -7.12582 -6.79608 -4.33068 0.77476 1.34575 2.26143 2.60481 2.69822 2.86549 3.04713 3.09488 3.14145 3.62435 3.72576 3.89870 3.97856 4.07468 4.28403 4.38522 4.53940 4.62845 4.73564 4.80038 4.84090 4.91544 5.02282 5.22084 5.24888 5.31774 5.38875 5.50986 5.58334 5.69871 5.93223 5.94291 6.13425 6.22531 6.32336 6.33272 6.62930 6.67061 6.87071 6.89626 7.02744 7.10586 7.34537 7.39832 7.47404 7.66163 7.69407 7.93177 8.12338 8.34949 8.56882 8.82607 8.90244 10.14892 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.034036 B = 0.001816 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.472394 B =15416.493498 C =15635.810037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.074 3.926 3 Si 0.907 3.093 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.462 4.462 8 H 0.077 0.923 9 C 0.089 3.911 10 C -0.134 4.134 11 C -0.117 4.117 12 C -0.013 4.013 13 O -0.316 6.316 14 C 0.041 3.959 15 C 0.095 3.905 16 H 0.113 0.887 17 O -0.539 6.539 18 C 0.081 3.919 19 N -0.484 5.484 20 C 0.260 3.740 21 N -0.498 5.498 22 C 0.040 3.960 23 C -0.067 4.067 24 C -0.131 4.131 25 C -0.105 4.105 26 C -0.099 4.099 27 C 0.060 3.940 28 C -0.167 4.167 29 C -0.200 4.200 30 H 0.280 0.720 31 H 0.126 0.874 32 H 0.098 0.902 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.370 0.630 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.213 0.787 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.119 0.881 43 H 0.092 0.908 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.099 -20.288 -3.543 20.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.492 4.492 8 H 0.095 0.905 9 C 0.087 3.913 10 C -0.153 4.153 11 C -0.136 4.136 12 C -0.056 4.056 13 O -0.231 6.231 14 C -0.037 4.037 15 C 0.034 3.966 16 H 0.130 0.870 17 O -0.343 6.343 18 C -0.042 4.042 19 N -0.174 5.174 20 C -0.026 4.026 21 N -0.216 5.216 22 C -0.078 4.078 23 C -0.086 4.086 24 C -0.151 4.151 25 C -0.125 4.125 26 C -0.120 4.120 27 C -0.048 4.048 28 C -0.185 4.185 29 C -0.219 4.219 30 H 0.091 0.909 31 H 0.144 0.856 32 H 0.116 0.884 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.217 0.783 36 H 0.128 0.872 37 H 0.114 0.886 38 H 0.229 0.771 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.137 0.863 43 H 0.110 0.890 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.733 -20.421 -3.315 20.761 hybrid contribution 1.819 1.305 0.233 2.251 sum 0.087 -19.116 -3.082 19.363 Atomic orbital electron populations 1.69839 1.07540 1.29166 1.35718 1.25900 0.94736 1.01327 0.92325 0.86276 0.80953 0.81005 0.78575 1.18453 1.19684 1.20035 1.19503 0.98135 0.91227 1.40326 0.90456 1.17616 0.91794 0.92152 0.89786 1.20994 0.98496 0.96340 0.99494 1.19842 1.00775 0.90198 1.02752 1.18585 0.97242 0.84626 1.05188 1.85892 1.54412 1.11875 1.70942 1.22986 0.96843 0.85166 0.98664 1.22345 1.01945 0.90335 0.81971 0.86959 1.86739 1.32724 1.95177 1.19670 1.22481 0.94123 0.85359 1.02223 1.45248 1.26915 1.28024 1.17180 1.25381 0.85869 0.92633 0.98708 1.70450 1.28194 1.16865 1.06134 1.19072 0.95028 0.98526 0.95146 1.20000 0.99545 0.97441 0.91626 1.20625 0.96003 1.00043 0.98427 1.20884 0.98455 0.95223 0.97929 1.19912 0.99112 1.00635 0.92343 1.18824 1.00357 0.95582 0.90070 1.20366 0.97974 0.97701 1.02506 1.20550 1.03170 0.92522 1.05694 0.90878 0.85618 0.88426 0.92041 0.92621 0.78280 0.87181 0.88567 0.77056 0.85601 0.85533 0.85384 0.86306 0.89002 0.88719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.27 10.96 55.55 0.61 -19.66 16 2 C 0.07 1.83 5.13 -17.34 -0.09 1.74 16 3 Si 0.91 18.30 29.60 -169.99 -5.03 13.27 16 4 H -0.26 -5.21 7.11 56.52 0.40 -4.80 16 5 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 7 C -0.46 -11.98 9.04 -37.83 -0.34 -12.33 16 8 H 0.08 1.93 7.91 -52.49 -0.41 1.51 16 9 C 0.09 2.31 5.57 -106.80 -0.60 1.72 16 10 C -0.13 -3.43 8.64 -39.25 -0.34 -3.77 16 11 C -0.12 -2.77 9.92 -39.83 -0.40 -3.17 16 12 C -0.01 -0.30 6.71 -38.78 -0.26 -0.56 16 13 O -0.32 -6.04 10.09 -23.59 -0.24 -6.28 16 14 C 0.04 0.53 4.36 37.16 0.16 0.70 16 15 C 0.09 1.00 3.49 -26.74 -0.09 0.91 16 16 H 0.11 1.35 8.14 -51.93 -0.42 0.92 16 17 O -0.54 -6.57 12.49 -40.08 -0.50 -7.07 16 18 C 0.08 0.60 5.81 -4.05 -0.02 0.58 16 19 N -0.48 -4.75 2.78 -115.80 -0.32 -5.07 16 20 C 0.26 2.58 12.49 -89.78 -1.12 1.46 16 21 N -0.50 -6.43 11.27 -12.05 -0.14 -6.56 16 22 C 0.04 0.51 7.23 -84.70 -0.61 -0.10 16 23 C -0.07 -0.71 10.05 -39.61 -0.40 -1.11 16 24 C -0.13 -1.15 9.96 -39.97 -0.40 -1.55 16 25 C -0.11 -0.91 10.03 -39.52 -0.40 -1.30 16 26 C -0.10 -0.96 9.65 -39.50 -0.38 -1.34 16 27 C 0.06 0.69 6.50 -83.99 -0.55 0.15 16 28 C -0.17 -3.55 8.96 -39.83 -0.36 -3.91 16 29 C -0.20 -4.72 9.74 -39.25 -0.38 -5.10 16 30 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 31 H 0.13 3.30 6.16 -52.49 -0.32 2.98 16 32 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 33 H 0.06 0.74 7.63 -51.93 -0.40 0.34 16 34 H 0.06 0.66 7.66 -51.93 -0.40 0.27 16 35 H 0.37 3.22 8.47 45.56 0.39 3.60 16 36 H 0.11 0.55 8.13 -51.93 -0.42 0.12 16 37 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.21 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 41 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.12 0.90 7.48 -52.49 -0.39 0.51 16 43 H 0.09 1.63 6.27 -52.49 -0.33 1.30 16 44 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 374.45 15.07 5.64 5.64 Total: -1.00 -32.73 374.45 -11.35 -44.09 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -4.81 Total: 8.61 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: -6.57 Total: -26.98 kcal Atomic # 7 Polarization: -31.44 SS G_CDS: 0.15 Total: -31.29 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.74 Total: -13.35 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.73 -11.35 -44.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040463189.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.785 kcal (2) G-P(sol) polarization free energy of solvation -32.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds