Wall clock time and date at job start Tue Mar 31 2020 05:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86794 * 120.00461 * 2 1 4 4 H 1.48497 * 109.47574 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47019 * 300.00270 * 3 2 1 6 6 H 1.48502 * 109.46950 * 59.99769 * 3 2 1 7 7 C 1.39893 * 119.99657 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99994 * 197.94813 * 7 2 1 9 9 C 1.41213 * 119.99972 * 17.93885 * 7 2 1 10 10 C 1.40838 * 120.17878 * 24.55261 * 9 7 2 11 11 C 1.36442 * 119.81206 * 180.02562 * 10 9 7 12 12 C 1.39312 * 120.18063 * 359.97438 * 11 10 9 13 13 O 1.35680 * 119.81481 * 179.97438 * 12 11 10 14 14 C 1.42896 * 117.00252 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47341 * 180.02562 * 14 13 12 16 16 H 1.09000 * 109.47273 * 305.00573 * 15 14 13 17 17 O 1.42901 * 109.46998 * 65.00575 * 15 14 13 18 18 C 1.52994 * 109.47416 * 185.00695 * 15 14 13 19 19 N 1.46496 * 109.47374 * 175.00202 * 18 15 14 20 20 C 1.36042 * 126.34632 * 264.99577 * 19 18 15 21 21 N 1.30112 * 110.09650 * 180.02562 * 20 19 18 22 22 C 1.35781 * 109.64662 * 0.02562 * 21 20 19 23 23 C 1.39744 * 133.60023 * 180.02562 * 22 21 20 24 24 C 1.36604 * 119.88394 * 180.02562 * 23 22 21 25 25 C 1.38783 * 120.66948 * 359.97438 * 24 23 22 26 26 C 1.37851 * 120.44835 * 0.24251 * 25 24 23 27 27 C 1.38048 * 126.35054 * 85.00056 * 19 18 15 28 28 C 1.39310 * 120.37081 * 0.25410 * 12 11 10 29 29 C 1.36438 * 120.18256 * 359.48935 * 28 12 11 30 30 H 0.97001 * 119.99528 * 0.02562 * 1 2 3 31 31 H 1.07995 * 120.09225 * 359.97438 * 10 9 7 32 32 H 1.07990 * 119.90591 * 179.97438 * 11 10 9 33 33 H 1.09003 * 109.46521 * 60.00457 * 14 13 12 34 34 H 1.09000 * 109.47558 * 300.00985 * 14 13 12 35 35 H 0.96693 * 114.00389 * 59.99885 * 17 15 14 36 36 H 1.09002 * 109.47647 * 54.99901 * 18 15 14 37 37 H 1.08999 * 109.47129 * 294.99919 * 18 15 14 38 38 H 1.07995 * 124.95581 * 359.96791 * 20 19 18 39 39 H 1.08000 * 120.05816 * 359.97438 * 23 22 21 40 40 H 1.07994 * 119.66639 * 179.97438 * 24 23 22 41 41 H 1.07995 * 119.77299 * 179.97438 * 25 24 23 42 42 H 1.08001 * 120.15256 * 179.67548 * 26 25 24 43 43 H 1.07997 * 119.91006 * 179.72045 * 28 12 11 44 44 H 1.07995 * 120.09621 * 180.25127 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6176 0.0000 4 1 3.7029 1.3463 0.0006 5 1 1.8842 2.3964 -1.2125 6 1 1.8842 2.3963 1.2125 7 6 2.0082 -1.2116 -0.0005 8 1 3.0488 -1.2345 0.2877 9 6 1.3536 -2.4046 -0.3777 10 6 0.2246 -2.3573 -1.2184 11 6 -0.4025 -3.5145 -1.5778 12 6 0.0714 -4.7405 -1.1159 13 8 -0.5582 -5.8867 -1.4775 14 6 -0.0212 -7.1097 -0.9699 15 6 -0.8567 -8.2848 -1.4818 16 1 -1.9031 -8.1279 -1.2202 17 8 -0.7293 -8.3768 -2.9021 18 6 -0.3597 -9.5818 -0.8401 19 7 -1.2333 -10.6889 -1.2367 20 6 -2.2936 -11.1708 -0.5337 21 7 -2.8456 -12.1575 -1.1777 22 6 -2.1761 -12.3765 -2.3385 23 6 -2.3352 -13.2882 -3.3856 24 6 -1.4776 -13.2604 -4.4484 25 6 -0.4460 -12.3336 -4.5016 26 6 -0.2673 -11.4277 -3.4781 27 6 -1.1331 -11.4365 -2.3928 28 6 1.1846 -4.7957 -0.2802 29 6 1.8263 -3.6481 0.0843 30 1 -0.4849 0.8401 -0.0004 31 1 -0.1442 -1.4077 -1.5769 32 1 -1.2685 -3.4800 -2.2220 33 1 -0.0464 -7.0930 0.1197 34 1 1.0089 -7.2223 -1.3078 35 1 0.1773 -8.5169 -3.2075 36 1 -0.3733 -9.4789 0.2449 37 1 0.6582 -9.7850 -1.1730 38 1 -2.6279 -10.7906 0.4202 39 1 -3.1344 -14.0140 -3.3541 40 1 -1.6035 -13.9669 -5.2555 41 1 0.2240 -12.3248 -5.3487 42 1 0.5403 -10.7119 -3.5220 43 1 1.5429 -5.7498 0.0771 44 1 2.6916 -3.6929 0.7289 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040463189.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:29 Heat of formation + Delta-G solvation = -9.958538 kcal Electronic energy + Delta-G solvation = -27311.381216 eV Core-core repulsion = 23386.774426 eV Total energy + Delta-G solvation = -3924.606790 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 7.08 seconds Orbital eigenvalues (eV) -43.07589 -40.66013 -39.04118 -38.16510 -37.64507 -35.19531 -34.95029 -32.34006 -31.62853 -30.99248 -30.47146 -30.20213 -27.46932 -26.37292 -24.17094 -23.83013 -22.99681 -22.57058 -22.29841 -21.42536 -19.27352 -18.98695 -18.23998 -18.14359 -17.46431 -17.09885 -17.07139 -16.65439 -16.58026 -15.80531 -15.70571 -15.56626 -15.03228 -14.97440 -14.76580 -14.55834 -14.45018 -14.08959 -13.94126 -13.59215 -13.25100 -13.08045 -12.82684 -12.80295 -12.73463 -12.64022 -12.44581 -12.35159 -12.16290 -11.72478 -11.66346 -11.56629 -11.19314 -11.02126 -10.89769 -10.87877 -9.56352 -9.27249 -9.02216 -8.93231 -8.60548 -6.23288 0.06371 0.61896 0.94048 1.02611 1.39614 1.50346 1.54526 1.56938 1.87833 2.22030 2.52452 2.72032 2.97494 3.29268 3.39371 3.63226 3.69749 3.73260 3.78046 3.85656 4.05099 4.15986 4.24465 4.27990 4.35393 4.39720 4.44819 4.54579 4.55324 4.64064 4.80395 4.87795 4.90974 5.06619 5.21766 5.26335 5.27900 5.50923 5.58801 5.61762 5.63249 5.63629 5.87433 6.00970 6.05818 6.20398 6.26121 6.55957 6.68482 6.81214 6.91346 6.94800 7.09931 8.35949 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.034036 B = 0.001816 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.472394 B =15416.493498 C =15635.810037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.032 3.968 3 Si 0.981 3.019 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.498 4.498 8 H 0.077 0.923 9 C 0.053 3.947 10 C -0.154 4.154 11 C -0.137 4.137 12 C 0.003 3.997 13 O -0.333 6.333 14 C 0.031 3.969 15 C 0.105 3.895 16 H 0.094 0.906 17 O -0.563 6.563 18 C 0.088 3.912 19 N -0.484 5.484 20 C 0.259 3.741 21 N -0.540 5.540 22 C 0.004 3.996 23 C -0.091 4.091 24 C -0.128 4.128 25 C -0.108 4.108 26 C -0.108 4.108 27 C 0.043 3.957 28 C -0.162 4.162 29 C -0.207 4.207 30 H 0.287 0.713 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.385 0.615 36 H 0.142 0.858 37 H 0.118 0.882 38 H 0.248 0.752 39 H 0.128 0.872 40 H 0.152 0.848 41 H 0.156 0.844 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.588 -21.476 -3.315 21.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.182 4.182 3 Si 0.802 3.198 4 H -0.180 1.180 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.527 4.527 8 H 0.095 0.905 9 C 0.051 3.949 10 C -0.174 4.174 11 C -0.155 4.155 12 C -0.041 4.041 13 O -0.249 6.249 14 C -0.045 4.045 15 C 0.044 3.956 16 H 0.112 0.888 17 O -0.370 6.370 18 C -0.034 4.034 19 N -0.173 5.173 20 C -0.026 4.026 21 N -0.259 5.259 22 C -0.113 4.113 23 C -0.111 4.111 24 C -0.148 4.148 25 C -0.128 4.128 26 C -0.129 4.129 27 C -0.066 4.066 28 C -0.180 4.180 29 C -0.226 4.226 30 H 0.097 0.903 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.234 0.766 36 H 0.159 0.841 37 H 0.136 0.864 38 H 0.264 0.736 39 H 0.146 0.854 40 H 0.170 0.830 41 H 0.174 0.826 42 H 0.158 0.842 43 H 0.154 0.846 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.033 -21.639 -3.092 21.859 hybrid contribution 1.226 1.438 0.101 1.892 sum 1.193 -20.201 -2.991 20.456 Atomic orbital electron populations 1.69899 1.08987 1.30367 1.36638 1.26743 0.95469 1.04541 0.91426 0.85176 0.79491 0.76362 0.78779 1.18038 1.19160 1.19227 1.19740 0.98375 0.92402 1.42228 0.90492 1.17972 0.92595 0.93538 0.90785 1.20888 0.99455 0.96348 1.00705 1.20000 1.01182 0.90943 1.03414 1.18620 0.96675 0.85241 1.03576 1.85880 1.54879 1.12807 1.71337 1.23417 0.98179 0.83026 0.99918 1.22240 1.00745 0.91037 0.81557 0.88772 1.86707 1.34292 1.95288 1.20708 1.22579 0.94346 0.82712 1.03764 1.45359 1.27098 1.28152 1.16665 1.26107 0.85328 0.91721 0.99433 1.70398 1.29715 1.18778 1.07057 1.19518 0.96136 0.99884 0.95799 1.20258 1.00618 0.97918 0.92291 1.20978 0.95258 1.00242 0.98275 1.21303 0.98527 0.94493 0.98462 1.20266 0.99358 1.01242 0.91987 1.19120 1.00559 0.95836 0.91104 1.20717 0.97012 0.98866 1.01407 1.20827 1.03645 0.92531 1.05611 0.90280 0.87539 0.87962 0.90117 0.90635 0.76613 0.84054 0.86407 0.73605 0.85395 0.82995 0.82634 0.84243 0.84565 0.87429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.63 10.96 21.82 0.24 -43.39 16 2 C 0.03 1.60 5.13 85.24 0.44 2.04 16 3 Si 0.98 37.92 29.60 68.60 2.03 39.95 16 4 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 5 H -0.27 -9.99 7.11 99.48 0.71 -9.29 16 6 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 7 C -0.50 -26.42 9.04 23.40 0.21 -26.20 16 8 H 0.08 3.91 7.91 -2.91 -0.02 3.89 16 9 C 0.05 2.83 5.57 -21.28 -0.12 2.71 16 10 C -0.15 -8.17 8.64 22.49 0.19 -7.98 16 11 C -0.14 -6.56 9.92 22.11 0.22 -6.34 16 12 C 0.00 0.11 6.71 22.79 0.15 0.27 16 13 O -0.33 -12.01 10.09 -85.34 -0.86 -12.87 16 14 C 0.03 0.69 4.36 71.98 0.31 1.00 16 15 C 0.10 1.92 3.49 30.59 0.11 2.02 16 16 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 17 O -0.56 -12.43 12.49 -144.34 -1.80 -14.24 16 18 C 0.09 0.96 5.81 86.38 0.50 1.46 16 19 N -0.48 -8.42 2.78 -520.28 -1.45 -9.86 16 20 C 0.26 4.79 12.49 180.05 2.25 7.04 16 21 N -0.54 -13.95 11.27 -192.03 -2.16 -16.11 16 22 C 0.00 0.10 7.23 39.45 0.29 0.38 16 23 C -0.09 -1.96 10.05 22.25 0.22 -1.74 16 24 C -0.13 -2.07 9.96 22.02 0.22 -1.85 16 25 C -0.11 -1.63 10.03 22.31 0.22 -1.41 16 26 C -0.11 -1.86 9.65 22.32 0.22 -1.64 16 27 C 0.04 0.92 6.50 38.86 0.25 1.17 16 28 C -0.16 -6.46 8.96 22.11 0.20 -6.26 16 29 C -0.21 -9.57 9.74 22.49 0.22 -9.35 16 30 H 0.29 13.59 8.30 -92.71 -0.77 12.82 16 31 H 0.11 5.92 6.16 -2.91 -0.02 5.90 16 32 H 0.10 4.65 8.06 -2.92 -0.02 4.63 16 33 H 0.08 1.54 7.63 -2.39 -0.02 1.52 16 34 H 0.08 1.43 7.66 -2.39 -0.02 1.41 16 35 H 0.38 5.56 8.47 -74.06 -0.63 4.93 16 36 H 0.14 0.70 8.13 -2.39 -0.02 0.68 16 37 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.25 2.23 8.06 -2.91 -0.02 2.20 16 39 H 0.13 2.47 8.06 -2.91 -0.02 2.45 16 40 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 41 H 0.16 1.40 8.06 -2.91 -0.02 1.37 16 42 H 0.14 1.68 7.48 -2.91 -0.02 1.66 16 43 H 0.14 4.16 6.27 -2.91 -0.02 4.14 16 44 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -74.56 374.45 2.51 -72.05 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: 0.41 Total: 29.15 kcal Atomic # 6 Polarization: -50.79 SS G_CDS: 6.11 Total: -44.68 kcal Atomic # 7 Polarization: -66.00 SS G_CDS: -3.37 Total: -69.37 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -2.66 Total: -27.11 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 2.03 Total: 39.95 kcal Total: -74.56 2.51 -72.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040463189.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.096 kcal (2) G-P(sol) polarization free energy of solvation -74.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.08 seconds